Rorug06G0445400

Vesicle transport V-snare

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
57644316 .. 57654732
10417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0445400.1

Sequence Viewer

Length: 1683 bp
ATGGCCGGCGATGAGAGATGGTGCGTCGTCACCGGAGGCCGTGGCTTCGCCGCTCGCCATTTGGTTCTCATGCTCATCCGCCAAAACGTCTTCCGCGTCCGAATCGCCGACCTCGGCCCCACCGTCGATCTCGAACCTTCCGAGTCCAACGGAGTCCTCGCCGATGCTTTGAACTCCGGCCGCGCCCAGTACATTTCCATCGACCTCCGCCGTAAGGATCAAGTTCTTCAAGCATGTCAAGGTGCTGAGGTTGTGTTCCACATGGCGGCTCCCAATTCGTCCATCAACAATTACCAGCTCCACCATTCGGTCAATGTGGAAGGAACTAAGAATGTGATTGATGCTTGTGTTGAGCAGAAAGTGAAGAGGCTCATATACACTAGCTCTCCTAGTGTTGTGTTTGATGGGGTTCATGGCATTATTGATGGGGATGAGTCATTGCCATATCCACCTAAGCACAATGATACTTATTCGGCCACTAAAGCGCAAGGAGAAGAGTTGGTAATCAAGGCAAACGGTGTTAAAGGGCTTCTAACCTGCTGCATACGCCCTAGCAGCATTTTCGGACCCGGTGATAGGTTACTTGTTCCATCTTTAATTGTTGCCGCCAGGGCAGGGAAATCCAAGTTCATTATCGGAGATGGCAATAACATTTATGACTTCACGTATGTTGAAAACGTGGCCCATGCCCATATATGTGCAGAACGAGCTCTAGCGTCTGAAGGGACAGTTGCAGAGAAAGCTGCAGGACAGGCATATTTTATAACCAATATGGAACCTATCAAGTTTTGGGAGTTTATGTCACTTATTCTAGAAGGTCTTGGCTATGAAAGACCAAGGATAAAAATCCCTGCAGCTGTTATGATGCCAATTGCACATGTGGTGGAGTGGACATTTAAGCTTTTTGGTCCATATGGGATGAAGGTTCCACAGTTGACGCCTTCAAGAATTAGACTTCTCTCTTGCACCAGATCTTTTAAATCTTCAAAAGCACAGGATCGAATTGGTTACACCCCCATCATTTCGCTTCAGGAGGGTCTTAAGAGGACAATCGAGTCATACCCACACTTGAGGGCTGAACATCGACCCAAAAGAGAAGGGCCATCTAAAGCTTCTGTGTATCTTGGAAGTGGGAGGGTTGCTGATGCATTACTGTGGAAGGACAAAAAACAGACATTCAAGGCACTATTATTTTTTATTGCAATCTACTACAACTTCATTGCATCTCAAGCTACAGTTATTACCGTAATTTCAAAGAGTCTCATGTTCACATCAATTTTCGTGTTCATCTCTGGCAATTTACCAGAAAAGATATTAGGATATAAACTCGAGAAGCTTCAGTCATCACATTTTAACTTATCAGAAGAGATGTCACAACAAATTGCTGGGTCGGTGGCCTCATCATGGAATATATCTGTGAAAACTTTAAAATCTCTTGGGAAAGGAAATGACTGGATATTGTTTCTTAAGGTGGCTCTATCCTTACTGGTTCTTAGCTTCCTTGGAGCCATTTCACTTCAGCACTCATTTATTATAGGAGTTTCCACTGCCTTTCTCGCCTTCTATGTGTACGAAAAGCAGGAAGAAAAAATCGATGCCATGGTCCTAGAAGCTTTCTCTCGTGGATGCAAATTGAAGTCCAATATGCTCCGAAAATTCAGTACATCCAAAAAGATTGAGTGA

Protein Analysis

560

Amino Acids

62.02

Weight (kDa)

9.31

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3Beta_HSD PF01073 9 - 283 2.6e-78 3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase PF01370 9 - 237 3.1e-34 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 9 - 129 1.6e-07 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 10 - 236 1.5e-14 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 57 - 133 2.4e-08 NAD(P)H-binding
RmlD_sub_bind PF04321 66 - 282 6.1e-08 RmlD substrate binding domain
NAD_binding_4 PF07993 76 - 229 1.4e-13 Male sterility protein
Reticulon PF02453 380 - 535 2e-31 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
AasI GACNNNNNNGTC 1 cut(s) 1054
Acc36I ACCTGC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 2 cut(s) 96, 183
AciI CCGC 7 cut(s) 51, 79, 94, 181, 208, 266, 606
AclWI GGATC 2 cut(s) 225, 1005
AcoI YGGCCR 3 cut(s) 3, 178, 474
AcsI RAATTY 1 cut(s) 1655
AcuI CTGAAG 4 cut(s) 741, 1013, 1322, 1502
AcyI GRCGYC 1 cut(s) 938
AfaI GTAC 3 cut(s) 191, 1571, 1663
AfiI CCNNNNNNNGG 6 cut(s) 214, 265, 307, 576, 615, 1404
AflII CTTAAG 2 cut(s) 1040, 1466
AflIII ACRYGT 1 cut(s) 877
AgsI TTSAA 8 cut(s) 172, 230, 674, 945, 987, 1180, 1254, 1636
AjnI CCWGG 1 cut(s) 608
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 1 cut(s) 1265
AlwI GGATC 2 cut(s) 225, 1005
Ama87I CYCGRG 1 cut(s) 1328
AoxI GGCC 8 cut(s) 3, 37, 115, 178, 474, 681, 1100, 1395
ApeKI GCWGC 4 cut(s) 540, 555, 743, 854
ApoI RAATTY 1 cut(s) 1655
AspLEI GCGC 2 cut(s) 185, 487
AspS9I GGNCC 6 cut(s) 116, 566, 682, 908, 1100, 1603
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 22, 584
AvaI CYCGRG 1 cut(s) 1328
AvaII GGWCC 3 cut(s) 566, 908, 1603
BanII GRGCYC 1 cut(s) 712
BauI CACGAG 1 cut(s) 1620
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 712
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 527, 567, 730, 866
BccI CCATC 9 cut(s) 12, 206, 290, 398, 419, 598, 635, 1025, 1111
BceAI ACGGC 2 cut(s) 24, 195
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BciT130I CCWGG 1 cut(s) 610
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 1265
BfaI CTAG 6 cut(s) 381, 390, 552, 713, 812, 1607
BfmI CTRYAG 3 cut(s) 744, 852, 1233
BfrI CTTAAG 2 cut(s) 1040, 1466
BfuAI ACCTGC 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 611
BglII AGATCT 1 cut(s) 971
BisI GCNGC 8 cut(s) 51, 181, 267, 541, 556, 606, 744, 855
BlsI GCNGC 8 cut(s) 52, 182, 268, 542, 557, 607, 745, 856
Bme1390I CCNGG 2 cut(s) 570, 610
Bme18I GGWCC 3 cut(s) 566, 908, 1603
BmeT110I CYCGRG 1 cut(s) 1328
BmgT120I GGNCC 6 cut(s) 116, 566, 682, 908, 1100, 1603
BmiI GGNNCC 6 cut(s) 118, 270, 568, 777, 927, 1507
BmrFI CCNGG 2 cut(s) 570, 610
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 7 cut(s) 154, 331, 855, 1135, 1232, 1585, 1616
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 82
Bpu10I CCTNAGC 2 cut(s) 246, 453
BpuEI CTTGAG 2 cut(s) 1090, 1212
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 1593
BsaAI YACGTR 1 cut(s) 666
BsaBI GATNNNNATC 1 cut(s) 845
BsaHI GRCGYC 1 cut(s) 938
BsaJI CCNNGG 6 cut(s) 40, 112, 609, 836, 1501, 1599
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 785, 815
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 265, 307, 576, 615, 1404
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 187, 1457, 1491
Bse3DI GCAATG 2 cut(s) 437, 1218
Bse8I GATNNNNATC 1 cut(s) 845
BseBI CCWGG 1 cut(s) 610
BseCI ATCGAT 1 cut(s) 1593
BseDI CCNNGG 6 cut(s) 40, 112, 609, 836, 1501, 1599
BseGI GGATG 5 cut(s) 75, 436, 924, 1631, 1664
BseJI GATNNNNATC 1 cut(s) 845
BseLI CCNNNNNNNGG 6 cut(s) 214, 265, 307, 576, 615, 1404
BseMI GCAATG 2 cut(s) 437, 1218
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 3 cut(s) 187, 1457, 1491
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 527, 567, 730, 866
BseYI CCCAGC 1 cut(s) 1385
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 2 cut(s) 96, 183
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 8 cut(s) 5, 39, 117, 180, 476, 683, 1102, 1397
BshVI ATCGAT 1 cut(s) 1593
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 1 cut(s) 1328
BsiSI CCGG 4 cut(s) 6, 33, 177, 570
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 6 cut(s) 214, 265, 307, 576, 615, 1404
BsmAI GTCTC 1 cut(s) 1265
BsmFI GGGAC 1 cut(s) 739
BsnI GGCC 8 cut(s) 5, 39, 117, 180, 476, 683, 1102, 1397
BsoBI CYCGRG 1 cut(s) 1328
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 4 cut(s) 127, 217, 971, 997
Bsp19I CCATGG 1 cut(s) 1599
BspACI CCGC 7 cut(s) 51, 79, 94, 181, 208, 266, 606
BspANI GGCC 8 cut(s) 5, 39, 117, 180, 476, 683, 1102, 1397
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 1593
BspFNI CGCG 2 cut(s) 96, 183
BspLI GGNNCC 6 cut(s) 118, 270, 568, 777, 927, 1507
BspMAI CTGCAG 2 cut(s) 748, 856
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 225, 1005
BspTI CTTAAG 2 cut(s) 1040, 1466
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 437, 1218
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 3 cut(s) 187, 1457, 1491
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 6 cut(s) 40, 112, 609, 836, 1501, 1599
BssMI GATC 4 cut(s) 127, 217, 971, 997
BssNI GRCGYC 1 cut(s) 938
BssSI CACGAG 1 cut(s) 1620
BssT1I CCWWGG 3 cut(s) 836, 1501, 1599
Bst2BI CACGAG 1 cut(s) 1620
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 7 cut(s) 124, 518, 730, 933, 1155, 1237, 1246
Bst6I CTCTTC 3 cut(s) 359, 489, 1359
BstACI GRCGYC 1 cut(s) 938
BstAFI CTTAAG 2 cut(s) 1040, 1466
BstBAI YACGTR 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 7, 55
BstDEI CTNAG 4 cut(s) 246, 327, 453, 1493
BstDSI CCRYGG 2 cut(s) 40, 1599
BstF5I GGATG 5 cut(s) 75, 436, 924, 1631, 1664
BstFNI CGCG 2 cut(s) 96, 183
BstHHI GCGC 2 cut(s) 185, 487
BstKTI GATC 4 cut(s) 130, 220, 974, 1000
BstMAI GTCTC 1 cut(s) 1265
BstMBI GATC 4 cut(s) 127, 217, 971, 997
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 9 cut(s) 482, 546, 555, 611, 707, 740, 752, 1229, 1556
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 2 cut(s) 237, 881
BstSCI CCNGG 2 cut(s) 568, 608
BstSFI CTRYAG 3 cut(s) 744, 852, 1233
BstUI CGCG 2 cut(s) 96, 183
BstV1I GCAGC 4 cut(s) 527, 567, 730, 866
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
BstZI CGGCCG 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 1593
BsuRI GGCC 8 cut(s) 5, 39, 117, 180, 476, 683, 1102, 1397
BsuTUI ATCGAT 1 cut(s) 1593
BtgI CCRYGG 2 cut(s) 40, 1599
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 5 cut(s) 75, 436, 924, 1631, 1664
BtsI GCAGTG 1 cut(s) 1545
BtsIMutI CAGTG 1 cut(s) 1545
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 7, 55
CfoI GCGC 2 cut(s) 185, 487
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 6 cut(s) 116, 566, 682, 908, 1100, 1603
ClaI ATCGAT 1 cut(s) 1593
CseI GACGC 4 cut(s) 13, 85, 705, 946
Csp6I GTAC 3 cut(s) 190, 1570, 1662
CviAII CATG 9 cut(s) 70, 234, 262, 413, 686, 878, 1264, 1404, 1600
CviQI GTAC 3 cut(s) 190, 1570, 1662
DdeI CTNAG 4 cut(s) 246, 327, 453, 1493
DpnI GATC 4 cut(s) 129, 219, 973, 999
DpnII GATC 4 cut(s) 127, 217, 971, 997
DraI TTTAAA 2 cut(s) 979, 1428
DrdI GACNNNNNNGTC 1 cut(s) 1054
DseDI GACNNNNNNGTC 1 cut(s) 1054
EaeI YGGCCR 3 cut(s) 3, 178, 474
EagI CGGCCG 1 cut(s) 178
Eam1104I CTCTTC 3 cut(s) 359, 489, 1359
EarI CTCTTC 3 cut(s) 359, 489, 1359
EciI GGCGGA 2 cut(s) 68, 197
Ecl136II GAGCTC 1 cut(s) 710
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 836, 1501, 1599
Eco24I GRGCYC 1 cut(s) 712
Eco47I GGWCC 3 cut(s) 566, 908, 1603
Eco52I CGGCCG 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 710
Eco57I CTGAAG 4 cut(s) 741, 1013, 1322, 1502
Eco88I CYCGRG 1 cut(s) 1328
EcoICRI GAGCTC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 3 cut(s) 836, 1501, 1599
EcoT22I ATGCAT 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 3 cut(s) 836, 1501, 1599
FaeI CATG 9 cut(s) 73, 237, 265, 416, 689, 881, 1267, 1407, 1603
FaqI GGGAC 1 cut(s) 739
FatI CATG 9 cut(s) 69, 233, 261, 412, 685, 877, 1263, 1403, 1599
FauNDI CATATG 1 cut(s) 913
Fnu4HI GCNGC 8 cut(s) 51, 181, 267, 541, 556, 606, 744, 855
FokI GGATG 5 cut(s) 62, 443, 931, 1638, 1651
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 8 cut(s) 51, 181, 267, 541, 556, 606, 744, 855
FspBI CTAG 6 cut(s) 381, 390, 552, 713, 812, 1607
GlaI GCGC 2 cut(s) 184, 486
GluI GCNGC 8 cut(s) 51, 181, 267, 541, 556, 606, 744, 855
GsaI CCCAGC 1 cut(s) 1389
HaeIII GGCC 8 cut(s) 5, 39, 117, 180, 476, 683, 1102, 1397
HapII CCGG 4 cut(s) 6, 33, 177, 570
HgaI GACGC 4 cut(s) 13, 85, 705, 946
HhaI GCGC 2 cut(s) 185, 487
Hin1I GRCGYC 1 cut(s) 938
Hin1II CATG 9 cut(s) 73, 237, 265, 416, 689, 881, 1267, 1407, 1603
Hin6I GCGC 2 cut(s) 183, 485
HinP1I GCGC 2 cut(s) 183, 485
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HindIII AAGCTT 4 cut(s) 899, 1110, 1334, 1611
HinfI GANTC 6 cut(s) 102, 143, 153, 434, 1055, 1258
HpaII CCGG 4 cut(s) 6, 33, 177, 570
HphI GGTGA 2 cut(s) 22, 584
Hpy166II GTNNAC 4 cut(s) 891, 936, 1269, 1570
Hpy188I TCNGA 7 cut(s) 101, 142, 566, 638, 721, 1363, 1652
Hpy188III TCNNGA 5 cut(s) 131, 812, 945, 1031, 1330
Hpy8I GTNNAC 4 cut(s) 891, 936, 1269, 1570
Hpy99I CGWCG 2 cut(s) 29, 128
HpyAV CCTTC 9 cut(s) 147, 314, 716, 809, 916, 951, 1091, 1153, 1570
HpyCH4III ACNGT 7 cut(s) 124, 518, 730, 933, 1155, 1237, 1246
HpyCH4IV ACGT 3 cut(s) 87, 665, 678
HpyF10VI GCNNNNNNNGC 9 cut(s) 482, 546, 555, 611, 707, 740, 752, 1229, 1556
HpyF3I CTNAG 4 cut(s) 246, 327, 453, 1493
HpySE526I ACGT 3 cut(s) 87, 665, 678
Hsp92I GRCGYC 1 cut(s) 938
Hsp92II CATG 9 cut(s) 73, 237, 265, 416, 689, 881, 1267, 1407, 1603
HspAI GCGC 2 cut(s) 183, 485
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 127, 217, 971, 997
LmnI GCTCC 4 cut(s) 274, 303, 1505, 1653
Lsp1109I GCAGC 4 cut(s) 527, 567, 730, 866
LweI GCATC 7 cut(s) 154, 331, 855, 1135, 1232, 1585, 1616
MaeI CTAG 6 cut(s) 381, 390, 552, 713, 812, 1607
MaeII ACGT 3 cut(s) 87, 665, 678
MaeIII GTNAC 5 cut(s) 28, 579, 801, 1007, 1371
MalI GATC 4 cut(s) 129, 219, 973, 999
MbiI CCGCTC 1 cut(s) 53
MboI GATC 4 cut(s) 127, 217, 971, 997
MboII GAAGA 7 cut(s) 82, 218, 376, 506, 975, 1376, 1595
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 1 cut(s) 712
MlyI GAGTC 5 cut(s) 152, 162, 443, 1064, 1267
MmeI TCCRAC 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 1150
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 8 cut(s) 522, 596, 897, 978, 1041, 1353, 1427, 1467
MslI CAYNNNNRTG 2 cut(s) 696, 1153
MspA1I CMGCKG 1 cut(s) 857
MspCI CTTAAG 2 cut(s) 1040, 1466
MspI CCGG 4 cut(s) 6, 33, 177, 570
MspR9I CCNGG 2 cut(s) 570, 610
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 2 cut(s) 96, 183
MwoI GCNNNNNNNGC 9 cut(s) 482, 546, 555, 611, 707, 740, 752, 1229, 1556
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 1599
NdeI CATATG 1 cut(s) 913
NdeII GATC 4 cut(s) 127, 217, 971, 997
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 9 cut(s) 73, 237, 265, 416, 689, 881, 1267, 1407, 1603
NlaIV GGNNCC 6 cut(s) 118, 270, 568, 777, 927, 1507
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 28, 801, 1371
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 2 cut(s) 237, 881
PaeR7I CTCGAG 1 cut(s) 1328
PciI ACATGT 1 cut(s) 877
PcsI WCGNNNNNNNCGW 3 cut(s) 93, 120, 138
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 8 cut(s) 52, 182, 268, 542, 557, 607, 745, 856
PleI GAGTC 5 cut(s) 151, 161, 442, 1063, 1266
PpsI GAGTC 5 cut(s) 151, 161, 442, 1063, 1266
Ppu21I YACGTR 1 cut(s) 666
PscI ACATGT 1 cut(s) 877
PsiI TTATAA 1 cut(s) 764
Psp124BI GAGCTC 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 608
PspFI CCCAGC 1 cut(s) 1385
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 6 cut(s) 118, 270, 568, 777, 927, 1507
PspPI GGNCC 6 cut(s) 116, 566, 682, 908, 1100, 1603
PstI CTGCAG 2 cut(s) 748, 856
PsuI RGATCY 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 3 cut(s) 191, 1571, 1663
RsaNI GTAC 3 cut(s) 190, 1570, 1662
RseI CAYNNNNRTG 2 cut(s) 696, 1153
SacI GAGCTC 1 cut(s) 712
SaqAI TTAA 8 cut(s) 522, 596, 897, 978, 1041, 1353, 1427, 1467
SatI GCNGC 8 cut(s) 51, 181, 267, 541, 556, 606, 744, 855
Sau3AI GATC 4 cut(s) 127, 217, 971, 997
Sau96I GGNCC 6 cut(s) 116, 566, 682, 908, 1100, 1603
SchI GAGTC 5 cut(s) 152, 162, 443, 1064, 1267
ScrFI CCNGG 2 cut(s) 570, 610
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 7 cut(s) 154, 331, 855, 1135, 1232, 1585, 1616
SfcI CTRYAG 3 cut(s) 744, 852, 1233
Sfr274I CTCGAG 1 cut(s) 1328
SinI GGWCC 3 cut(s) 566, 908, 1603
SlaI CTCGAG 1 cut(s) 1328
SmiMI CAYNNNNRTG 2 cut(s) 696, 1153
SmlI CTYRAG 5 cut(s) 1040, 1069, 1227, 1328, 1466
SmoI CTYRAG 5 cut(s) 1040, 1069, 1227, 1328, 1466
SsiI CCGC 7 cut(s) 51, 79, 94, 181, 208, 266, 606
SspMI CTAG 6 cut(s) 381, 390, 552, 713, 812, 1607
SstI GAGCTC 1 cut(s) 712
StyD4I CCNGG 2 cut(s) 568, 608
StyI CCWWGG 3 cut(s) 836, 1501, 1599
TaaI ACNGT 7 cut(s) 124, 518, 730, 933, 1155, 1237, 1246
TaiI ACGT 3 cut(s) 90, 668, 681
TaqI TCGA 8 cut(s) 126, 132, 201, 1000, 1053, 1084, 1329, 1593
TaqII GACCGA 1 cut(s) 298
TatI WGTACW 2 cut(s) 189, 1661
TauI GCSGC 4 cut(s) 53, 183, 269, 608
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 8 cut(s) 522, 596, 897, 978, 1041, 1353, 1427, 1467
Tru9I TTAA 8 cut(s) 522, 596, 897, 978, 1041, 1353, 1427, 1467
TscAI CASTG 1 cut(s) 1552
TseFI GTSAC 3 cut(s) 28, 801, 1371
TseI GCWGC 4 cut(s) 540, 555, 743, 854
Tsp45I GTSAC 3 cut(s) 28, 801, 1371
TspDTI ATGAA 6 cut(s) 401, 619, 843, 935, 1207, 1276
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 1552
Vha464I CTTAAG 2 cut(s) 1040, 1466
VpaK11BI GGWCC 3 cut(s) 566, 908, 1603
XapI RAATTY 1 cut(s) 1655
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 2 cut(s) 237, 881
XhoI CTCGAG 1 cut(s) 1328
XspI CTAG 6 cut(s) 381, 390, 552, 713, 812, 1607
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.