Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 113 - 233 | 5.1e-19 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 181, 795 |
| AccB1I | GGYRCC | 1 cut(s) | 306 |
| AccII | CGCG | 2 cut(s) | 503, 505 |
| AciI | CCGC | 6 cut(s) | 43, 374, 384, 404, 461, 850 |
| AclWI | GGATC | 3 cut(s) | 240, 577, 742 |
| AcoI | YGGCCR | 1 cut(s) | 211 |
| AcsI | RAATTY | 1 cut(s) | 517 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AfaI | GTAC | 4 cut(s) | 219, 448, 616, 890 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 180, 186, 436, 699 |
| AgsI | TTSAA | 2 cut(s) | 134, 530 |
| AjiI | CACGTC | 1 cut(s) | 158 |
| AjnI | CCWGG | 2 cut(s) | 179, 208 |
| AluBI | AGCT | 5 cut(s) | 77, 200, 281, 435, 466 |
| AluI | AGCT | 5 cut(s) | 77, 200, 281, 435, 466 |
| Alw21I | GWGCWC | 2 cut(s) | 202, 468 |
| Alw26I | GTCTC | 2 cut(s) | 164, 253 |
| AlwI | GGATC | 3 cut(s) | 240, 577, 742 |
| AoxI | GGCC | 5 cut(s) | 177, 211, 346, 439, 495 |
| ApoI | RAATTY | 1 cut(s) | 517 |
| AspLEI | GCGC | 1 cut(s) | 505 |
| AspS9I | GGNCC | 3 cut(s) | 368, 439, 496 |
| AsuC2I | CCSGG | 1 cut(s) | 366 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| AsuNHI | GCTAGC | 1 cut(s) | 73 |
| AvaII | GGWCC | 1 cut(s) | 368 |
| BalI | TGGCCA | 1 cut(s) | 213 |
| BanI | GGYRCC | 1 cut(s) | 306 |
| BanII | GRGCYC | 3 cut(s) | 8, 202, 468 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 268, 300 |
| Bbv12I | GWGCWC | 2 cut(s) | 202, 468 |
| BccI | CCATC | 2 cut(s) | 338, 450 |
| BciT130I | CCWGG | 2 cut(s) | 181, 210 |
| BcnI | CCSGG | 1 cut(s) | 366 |
| BcoDI | GTCTC | 2 cut(s) | 164, 253 |
| BfaI | CTAG | 2 cut(s) | 74, 854 |
| BfmI | CTRYAG | 1 cut(s) | 790 |
| BfuAI | ACCTGC | 2 cut(s) | 181, 795 |
| BisI | GCNGC | 1 cut(s) | 375 |
| BlsI | GCNGC | 1 cut(s) | 376 |
| Bme1390I | CCNGG | 3 cut(s) | 181, 210, 366 |
| Bme18I | GGWCC | 1 cut(s) | 368 |
| BmgBI | CACGTC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 3 cut(s) | 368, 439, 496 |
| BmiI | GGNNCC | 3 cut(s) | 7, 308, 369 |
| BmrFI | CCNGG | 3 cut(s) | 181, 210, 366 |
| BmsI | GCATC | 1 cut(s) | 102 |
| BmtI | GCTAGC | 1 cut(s) | 77 |
| BpmI | CTGGAG | 1 cut(s) | 578 |
| Bpu10I | CCTNAGC | 1 cut(s) | 431 |
| BpuMI | CCSGG | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 3 cut(s) | 174, 208, 584 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 180, 186, 436, 699 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseBI | CCWGG | 2 cut(s) | 181, 210 |
| BseDI | CCNNGG | 3 cut(s) | 174, 208, 584 |
| BseGI | GGATG | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 180, 186, 436, 699 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 1 cut(s) | 780 |
| BseRI | GAGGAG | 1 cut(s) | 747 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| Bsh1236I | CGCG | 2 cut(s) | 503, 505 |
| BshFI | GGCC | 5 cut(s) | 179, 213, 348, 441, 497 |
| BshNI | GGYRCC | 1 cut(s) | 306 |
| BsiHKAI | GWGCWC | 2 cut(s) | 202, 468 |
| BsiSI | CCGG | 2 cut(s) | 365, 916 |
| BslFI | GGGAC | 2 cut(s) | 278, 885 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 180, 186, 436, 699 |
| BsmAI | GTCTC | 2 cut(s) | 164, 253 |
| BsmBI | CGTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 2 cut(s) | 278, 885 |
| BsmI | GAATGC | 2 cut(s) | 676, 727 |
| BsnI | GGCC | 5 cut(s) | 179, 213, 348, 441, 497 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 202, 468 |
| Bsp143I | GATC | 4 cut(s) | 16, 232, 569, 747 |
| BspACI | CCGC | 6 cut(s) | 43, 374, 384, 404, 461, 850 |
| BspANI | GGCC | 5 cut(s) | 179, 213, 348, 441, 497 |
| BspCNI | CTCAG | 1 cut(s) | 779 |
| BspFNI | CGCG | 2 cut(s) | 503, 505 |
| BspLI | GGNNCC | 3 cut(s) | 7, 308, 369 |
| BspMI | ACCTGC | 2 cut(s) | 181, 795 |
| BspOI | GCTAGC | 1 cut(s) | 77 |
| BspPI | GGATC | 3 cut(s) | 240, 577, 742 |
| BspT107I | GGYRCC | 1 cut(s) | 306 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BssECI | CCNNGG | 3 cut(s) | 174, 208, 584 |
| BssMI | GATC | 4 cut(s) | 16, 232, 569, 747 |
| BssT1I | CCWWGG | 1 cut(s) | 584 |
| Bst2UI | CCWGG | 2 cut(s) | 181, 210 |
| Bst4CI | ACNGT | 2 cut(s) | 794, 893 |
| Bst6I | CTCTTC | 1 cut(s) | 544 |
| BstC8I | GCNNGC | 3 cut(s) | 75, 512, 782 |
| BstDEI | CTNAG | 2 cut(s) | 431, 766 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 477 |
| BstFNI | CGCG | 2 cut(s) | 503, 505 |
| BstHHI | GCGC | 1 cut(s) | 505 |
| BstKTI | GATC | 4 cut(s) | 19, 235, 572, 750 |
| BstMAI | GTCTC | 2 cut(s) | 164, 253 |
| BstMBI | GATC | 4 cut(s) | 16, 232, 569, 747 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 511 |
| BstNI | CCWGG | 2 cut(s) | 181, 210 |
| BstNSI | RCATGY | 2 cut(s) | 381, 784 |
| BstSCI | CCNGG | 3 cut(s) | 179, 208, 364 |
| BstSFI | CTRYAG | 1 cut(s) | 790 |
| BstUI | CGCG | 2 cut(s) | 503, 505 |
| BstX2I | RGATCY | 2 cut(s) | 569, 747 |
| BstYI | RGATCY | 2 cut(s) | 569, 747 |
| BsuRI | GGCC | 5 cut(s) | 179, 213, 348, 441, 497 |
| BtrI | CACGTC | 1 cut(s) | 158 |
| BtsCI | GGATG | 1 cut(s) | 477 |
| BveI | ACCTGC | 2 cut(s) | 181, 795 |
| Cac8I | GCNNGC | 3 cut(s) | 75, 512, 782 |
| CfoI | GCGC | 1 cut(s) | 505 |
| Cfr13I | GGNCC | 3 cut(s) | 368, 439, 496 |
| Csp6I | GTAC | 4 cut(s) | 218, 447, 615, 889 |
| CviAII | CATG | 7 cut(s) | 97, 215, 378, 470, 555, 634, 781 |
| CviQI | GTAC | 4 cut(s) | 218, 447, 615, 889 |
| DdeI | CTNAG | 2 cut(s) | 431, 766 |
| DpnI | GATC | 4 cut(s) | 18, 234, 571, 749 |
| DpnII | GATC | 4 cut(s) | 16, 232, 569, 747 |
| EaeI | YGGCCR | 1 cut(s) | 211 |
| Eam1104I | CTCTTC | 1 cut(s) | 544 |
| EarI | CTCTTC | 1 cut(s) | 544 |
| EciI | GGCGGA | 1 cut(s) | 839 |
| Ecl136II | GAGCTC | 2 cut(s) | 200, 466 |
| Eco130I | CCWWGG | 1 cut(s) | 584 |
| Eco24I | GRGCYC | 3 cut(s) | 8, 202, 468 |
| Eco47I | GGWCC | 1 cut(s) | 368 |
| Eco53kI | GAGCTC | 2 cut(s) | 200, 466 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| EcoICRI | GAGCTC | 2 cut(s) | 200, 466 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 184 |
| EcoO109I | RGGNCCY | 1 cut(s) | 368 |
| EcoRII | CCWGG | 2 cut(s) | 179, 208 |
| EcoT14I | CCWWGG | 1 cut(s) | 584 |
| EcoT38I | GRGCYC | 3 cut(s) | 8, 202, 468 |
| ErhI | CCWWGG | 1 cut(s) | 584 |
| Esp3I | CGTCTC | 1 cut(s) | 164 |
| FaeI | CATG | 7 cut(s) | 100, 218, 381, 473, 558, 637, 784 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 523, 555 |
| FaqI | GGGAC | 2 cut(s) | 278, 885 |
| FatI | CATG | 7 cut(s) | 96, 214, 377, 469, 554, 633, 780 |
| FauI | CCCGC | 2 cut(s) | 377, 397 |
| Fnu4HI | GCNGC | 1 cut(s) | 375 |
| FokI | GGATG | 1 cut(s) | 464 |
| FriOI | GRGCYC | 3 cut(s) | 8, 202, 468 |
| Fsp4HI | GCNGC | 1 cut(s) | 375 |
| FspBI | CTAG | 2 cut(s) | 74, 854 |
| GlaI | GCGC | 1 cut(s) | 504 |
| GluI | GCNGC | 1 cut(s) | 375 |
| GsuI | CTGGAG | 1 cut(s) | 578 |
| HaeIII | GGCC | 5 cut(s) | 179, 213, 348, 441, 497 |
| HapII | CCGG | 2 cut(s) | 365, 916 |
| HhaI | GCGC | 1 cut(s) | 505 |
| Hin1II | CATG | 7 cut(s) | 100, 218, 381, 473, 558, 637, 784 |
| Hin6I | GCGC | 1 cut(s) | 503 |
| HinP1I | GCGC | 1 cut(s) | 503 |
| HindIII | AAGCTT | 1 cut(s) | 433 |
| HinfI | GANTC | 2 cut(s) | 398, 536 |
| HpaII | CCGG | 2 cut(s) | 365, 916 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy188I | TCNGA | 2 cut(s) | 16, 769 |
| Hpy188III | TCNNGA | 4 cut(s) | 395, 567, 595, 662 |
| HpyAV | CCTTC | 4 cut(s) | 128, 294, 327, 659 |
| HpyCH4III | ACNGT | 2 cut(s) | 794, 893 |
| HpyCH4IV | ACGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 3 cut(s) | 628, 763, 804 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 511 |
| HpyF3I | CTNAG | 2 cut(s) | 431, 766 |
| HpySE526I | ACGT | 1 cut(s) | 157 |
| Hsp92II | CATG | 7 cut(s) | 100, 218, 381, 473, 558, 637, 784 |
| HspAI | GCGC | 1 cut(s) | 503 |
| Kzo9I | GATC | 4 cut(s) | 16, 232, 569, 747 |
| LmnI | GCTCC | 6 cut(s) | 11, 197, 286, 463, 471, 597 |
| LweI | GCATC | 1 cut(s) | 102 |
| MaeI | CTAG | 2 cut(s) | 74, 854 |
| MaeII | ACGT | 1 cut(s) | 157 |
| MalI | GATC | 4 cut(s) | 18, 234, 571, 749 |
| MboI | GATC | 4 cut(s) | 16, 232, 569, 747 |
| MboII | GAAGA | 5 cut(s) | 50, 121, 312, 531, 705 |
| MfeI | CAATTG | 2 cut(s) | 610, 741 |
| MflI | RGATCY | 2 cut(s) | 569, 747 |
| MhlI | GDGCHC | 3 cut(s) | 8, 202, 468 |
| MlsI | TGGCCA | 1 cut(s) | 213 |
| MluCI | AATT | 6 cut(s) | 491, 517, 610, 686, 694, 741 |
| MluNI | TGGCCA | 1 cut(s) | 213 |
| MlyI | GAGTC | 1 cut(s) | 530 |
| MmeI | TCCRAC | 1 cut(s) | 175 |
| Mox20I | TGGCCA | 1 cut(s) | 213 |
| MscI | TGGCCA | 1 cut(s) | 213 |
| MseI | TTAA | 1 cut(s) | 819 |
| Msp20I | TGGCCA | 1 cut(s) | 213 |
| MspI | CCGG | 2 cut(s) | 365, 916 |
| MspR9I | CCNGG | 3 cut(s) | 181, 210, 366 |
| MunI | CAATTG | 2 cut(s) | 610, 741 |
| Mva1269I | GAATGC | 2 cut(s) | 676, 727 |
| MvaI | CCWGG | 2 cut(s) | 181, 210 |
| MvnI | CGCG | 2 cut(s) | 503, 505 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 511 |
| NciI | CCSGG | 1 cut(s) | 366 |
| NdeII | GATC | 4 cut(s) | 16, 232, 569, 747 |
| NheI | GCTAGC | 1 cut(s) | 73 |
| NlaIII | CATG | 7 cut(s) | 100, 218, 381, 473, 558, 637, 784 |
| NlaIV | GGNNCC | 3 cut(s) | 7, 308, 369 |
| NmeAIII | GCCGAG | 1 cut(s) | 155 |
| NspI | RCATGY | 2 cut(s) | 381, 784 |
| PaeI | GCATGC | 1 cut(s) | 784 |
| PctI | GAATGC | 2 cut(s) | 676, 727 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PkrI | GCNGC | 1 cut(s) | 376 |
| PleI | GAGTC | 1 cut(s) | 530 |
| PpsI | GAGTC | 1 cut(s) | 530 |
| PpuMI | RGGWCCY | 1 cut(s) | 368 |
| Psp124BI | GAGCTC | 2 cut(s) | 202, 468 |
| Psp5II | RGGWCCY | 1 cut(s) | 368 |
| Psp6I | CCWGG | 2 cut(s) | 179, 208 |
| PspGI | CCWGG | 2 cut(s) | 179, 208 |
| PspN4I | GGNNCC | 3 cut(s) | 7, 308, 369 |
| PspPI | GGNCC | 3 cut(s) | 368, 439, 496 |
| PspPPI | RGGWCCY | 1 cut(s) | 368 |
| PsuI | RGATCY | 2 cut(s) | 569, 747 |
| RsaI | GTAC | 4 cut(s) | 219, 448, 616, 890 |
| RsaNI | GTAC | 4 cut(s) | 218, 447, 615, 889 |
| SacI | GAGCTC | 2 cut(s) | 202, 468 |
| SaqAI | TTAA | 1 cut(s) | 819 |
| SatI | GCNGC | 1 cut(s) | 375 |
| Sau3AI | GATC | 4 cut(s) | 16, 232, 569, 747 |
| Sau96I | GGNCC | 3 cut(s) | 368, 439, 496 |
| SchI | GAGTC | 1 cut(s) | 530 |
| ScrFI | CCNGG | 3 cut(s) | 181, 210, 366 |
| SduI | GDGCHC | 3 cut(s) | 8, 202, 468 |
| SfaNI | GCATC | 1 cut(s) | 102 |
| SfcI | CTRYAG | 1 cut(s) | 790 |
| SinI | GGWCC | 1 cut(s) | 368 |
| SphI | GCATGC | 1 cut(s) | 784 |
| Sse9I | AATT | 6 cut(s) | 491, 517, 610, 686, 694, 741 |
| SsiI | CCGC | 6 cut(s) | 43, 374, 384, 404, 461, 850 |
| SspMI | CTAG | 2 cut(s) | 74, 854 |
| SstI | GAGCTC | 2 cut(s) | 202, 468 |
| StyD4I | CCNGG | 3 cut(s) | 179, 208, 364 |
| StyI | CCWWGG | 1 cut(s) | 584 |
| TaaI | ACNGT | 2 cut(s) | 794, 893 |
| TaiI | ACGT | 1 cut(s) | 160 |
| TaqI | TCGA | 4 cut(s) | 394, 489, 542, 661 |
| TasI | AATT | 6 cut(s) | 491, 517, 610, 686, 694, 741 |
| TatI | WGTACW | 1 cut(s) | 614 |
| TauI | GCSGC | 1 cut(s) | 377 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 1 cut(s) | 819 |
| Tru9I | TTAA | 1 cut(s) | 819 |
| VpaK11BI | GGWCC | 1 cut(s) | 368 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 184 |
| XapI | RAATTY | 1 cut(s) | 517 |
| XceI | RCATGY | 2 cut(s) | 381, 784 |
| XspI | CTAG | 2 cut(s) | 74, 854 |