ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 20 |
| AccII | CGCG | 1 cut(s) | 1407 |
| AciI | CCGC | 1 cut(s) | 354 |
| AclWI | GGATC | 5 cut(s) | 82, 95, 647, 660, 1470 |
| AcsI | RAATTY | 2 cut(s) | 779, 1519 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AfaI | GTAC | 3 cut(s) | 457, 898, 1183 |
| AflIII | ACRYGT | 1 cut(s) | 1252 |
| AgsI | TTSAA | 8 cut(s) | 104, 632, 961, 1048, 1088, 1142, 1150, 1166 |
| AhlI | ACTAGT | 1 cut(s) | 253 |
| AjnI | CCWGG | 2 cut(s) | 26, 394 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 328, 360 |
| AluBI | AGCT | 9 cut(s) | 69, 647, 703, 1091, 1174, 1228, 1232, 1324, 1469 |
| AluI | AGCT | 9 cut(s) | 69, 647, 703, 1091, 1174, 1228, 1232, 1324, 1469 |
| Alw21I | GWGCWC | 1 cut(s) | 705 |
| AlwI | GGATC | 5 cut(s) | 82, 95, 647, 660, 1470 |
| AoxI | GGCC | 1 cut(s) | 392 |
| ApeKI | GCWGC | 3 cut(s) | 1091, 1174, 1321 |
| ApoI | RAATTY | 2 cut(s) | 779, 1519 |
| AseI | ATTAAT | 1 cut(s) | 914 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuC2I | CCSGG | 1 cut(s) | 1304 |
| AsuHPI | GGTGA | 2 cut(s) | 160, 412 |
| AsuII | TTCGAA | 1 cut(s) | 334 |
| AsuNHI | GCTAGC | 1 cut(s) | 1228 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 1 cut(s) | 25 |
| BamHI | GGATCC | 2 cut(s) | 87, 652 |
| BanI | GGYRCC | 1 cut(s) | 20 |
| BanII | GRGCYC | 2 cut(s) | 246, 705 |
| BbsI | GAAGAC | 1 cut(s) | 675 |
| Bbv12I | GWGCWC | 1 cut(s) | 705 |
| BbvI | GCAGC | 3 cut(s) | 1078, 1161, 1333 |
| BccI | CCATC | 1 cut(s) | 754 |
| BceAI | ACGGC | 2 cut(s) | 299, 723 |
| BciT130I | CCWGG | 2 cut(s) | 28, 396 |
| BciVI | GTATCC | 1 cut(s) | 825 |
| BclI | TGATCA | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 1304 |
| BcuI | ACTAGT | 1 cut(s) | 253 |
| BfaI | CTAG | 6 cut(s) | 254, 792, 1229, 1280, 1443, 1466 |
| BfmI | CTRYAG | 1 cut(s) | 1295 |
| BfuI | GTATCC | 1 cut(s) | 825 |
| BisI | GCNGC | 3 cut(s) | 1092, 1175, 1322 |
| BlsI | GCNGC | 3 cut(s) | 1093, 1176, 1323 |
| Bme1390I | CCNGG | 3 cut(s) | 28, 396, 1304 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 3 cut(s) | 22, 89, 654 |
| BmrFI | CCNGG | 3 cut(s) | 28, 396, 1304 |
| BmrI | ACTGGG | 2 cut(s) | 93, 900 |
| BmsI | GCATC | 2 cut(s) | 884, 1405 |
| BmtI | GCTAGC | 1 cut(s) | 1232 |
| BmuI | ACTGGG | 2 cut(s) | 93, 900 |
| BpiI | GAAGAC | 1 cut(s) | 675 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 100, 132 |
| Bpu10I | CCTNAGC | 1 cut(s) | 245 |
| Bpu14I | TTCGAA | 1 cut(s) | 334 |
| BpuMI | CCSGG | 1 cut(s) | 1304 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 395, 1302, 1316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 956, 986 |
| Bse1I | ACTGG | 3 cut(s) | 88, 906, 1250 |
| Bse3DI | GCAATG | 1 cut(s) | 1101 |
| BseBI | CCWGG | 2 cut(s) | 28, 396 |
| BseDI | CCNNGG | 4 cut(s) | 26, 395, 1302, 1316 |
| BseGI | GGATG | 1 cut(s) | 383 |
| BseMI | GCAATG | 1 cut(s) | 1101 |
| BseMII | CTCAG | 2 cut(s) | 259, 968 |
| BseNI | ACTGG | 3 cut(s) | 88, 906, 1250 |
| BseRI | GAGGAG | 2 cut(s) | 876, 1461 |
| BseSI | GKGCMC | 1 cut(s) | 25 |
| BseXI | GCAGC | 3 cut(s) | 1078, 1161, 1333 |
| Bsh1236I | CGCG | 1 cut(s) | 1407 |
| BshFI | GGCC | 1 cut(s) | 394 |
| BshNI | GGYRCC | 1 cut(s) | 20 |
| BsiHKAI | GWGCWC | 1 cut(s) | 705 |
| BsiSI | CCGG | 2 cut(s) | 1110, 1304 |
| BslFI | GGGAC | 3 cut(s) | 623, 1256, 1285 |
| BsmFI | GGGAC | 3 cut(s) | 623, 1256, 1285 |
| BsmI | GAATGC | 3 cut(s) | 436, 721, 1518 |
| BsnI | GGCC | 1 cut(s) | 394 |
| Bsp119I | TTCGAA | 1 cut(s) | 334 |
| Bsp1286I | GDGCHC | 3 cut(s) | 25, 246, 705 |
| Bsp143I | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| BspACI | CCGC | 1 cut(s) | 354 |
| BspANI | GGCC | 1 cut(s) | 394 |
| BspCNI | CTCAG | 2 cut(s) | 258, 967 |
| BspFNI | CGCG | 1 cut(s) | 1407 |
| BspLI | GGNNCC | 3 cut(s) | 22, 89, 654 |
| BspMAI | CTGCAG | 1 cut(s) | 1299 |
| BspOI | GCTAGC | 1 cut(s) | 1232 |
| BspPI | GGATC | 5 cut(s) | 82, 95, 647, 660, 1470 |
| BspT104I | TTCGAA | 1 cut(s) | 334 |
| BspT107I | GGYRCC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 1101 |
| BsrI | ACTGG | 3 cut(s) | 88, 906, 1250 |
| BssECI | CCNNGG | 4 cut(s) | 26, 395, 1302, 1316 |
| BssMI | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| BssT1I | CCWWGG | 1 cut(s) | 1316 |
| Bst2UI | CCWGG | 2 cut(s) | 28, 396 |
| Bst4CI | ACNGT | 3 cut(s) | 991, 1433, 1505 |
| Bst6I | CTCTTC | 3 cut(s) | 853, 1134, 1279 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 716 |
| BstBI | TTCGAA | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 3 cut(s) | 1011, 1172, 1230 |
| BstDEI | CTNAG | 2 cut(s) | 245, 954 |
| BstF5I | GGATG | 1 cut(s) | 383 |
| BstFNI | CGCG | 1 cut(s) | 1407 |
| BstKTI | GATC | 7 cut(s) | 64, 90, 592, 655, 1138, 1450, 1465 |
| BstMBI | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 716, 1321 |
| BstNI | CCWGG | 2 cut(s) | 28, 396 |
| BstNSI | RCATGY | 3 cut(s) | 981, 1085, 1256 |
| BstSCI | CCNGG | 3 cut(s) | 26, 394, 1302 |
| BstSFI | CTRYAG | 1 cut(s) | 1295 |
| BstSLI | GKGCMC | 1 cut(s) | 25 |
| BstUI | CGCG | 1 cut(s) | 1407 |
| BstV1I | GCAGC | 3 cut(s) | 1078, 1161, 1333 |
| BstV2I | GAAGAC | 1 cut(s) | 675 |
| BstX2I | RGATCY | 3 cut(s) | 87, 652, 1462 |
| BstYI | RGATCY | 3 cut(s) | 87, 652, 1462 |
| BsuI | GTATCC | 1 cut(s) | 825 |
| BsuRI | GGCC | 1 cut(s) | 394 |
| BtsCI | GGATG | 1 cut(s) | 383 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 987 |
| Cac8I | GCNNGC | 3 cut(s) | 1011, 1172, 1230 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 1 cut(s) | 1166 |
| Csp6I | GTAC | 3 cut(s) | 456, 897, 1182 |
| CviAII | CATG | 5 cut(s) | 201, 978, 1031, 1082, 1253 |
| CviQI | GTAC | 3 cut(s) | 456, 897, 1182 |
| DdeI | CTNAG | 2 cut(s) | 245, 954 |
| DpnI | GATC | 7 cut(s) | 63, 89, 591, 654, 1137, 1449, 1464 |
| DpnII | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| Eam1104I | CTCTTC | 3 cut(s) | 853, 1134, 1279 |
| EarI | CTCTTC | 3 cut(s) | 853, 1134, 1279 |
| Ecl136II | GAGCTC | 1 cut(s) | 703 |
| Eco130I | CCWWGG | 1 cut(s) | 1316 |
| Eco24I | GRGCYC | 2 cut(s) | 246, 705 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 703 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoICRI | GAGCTC | 1 cut(s) | 703 |
| EcoRII | CCWGG | 2 cut(s) | 26, 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 1316 |
| EcoT22I | ATGCAT | 1 cut(s) | 1420 |
| EcoT38I | GRGCYC | 2 cut(s) | 246, 705 |
| ErhI | CCWWGG | 1 cut(s) | 1316 |
| FaeI | CATG | 5 cut(s) | 204, 981, 1034, 1085, 1256 |
| FaqI | GGGAC | 3 cut(s) | 623, 1256, 1285 |
| FatI | CATG | 5 cut(s) | 200, 977, 1030, 1081, 1252 |
| FauNDI | CATATG | 1 cut(s) | 389 |
| FbaI | TGATCA | 1 cut(s) | 61 |
| Fnu4HI | GCNGC | 3 cut(s) | 1092, 1175, 1322 |
| FokI | GGATG | 1 cut(s) | 370 |
| FriOI | GRGCYC | 2 cut(s) | 246, 705 |
| Fsp4HI | GCNGC | 3 cut(s) | 1092, 1175, 1322 |
| FspBI | CTAG | 6 cut(s) | 254, 792, 1229, 1280, 1443, 1466 |
| GluI | GCNGC | 3 cut(s) | 1092, 1175, 1322 |
| HaeIII | GGCC | 1 cut(s) | 394 |
| HapII | CCGG | 2 cut(s) | 1110, 1304 |
| HgaI | GACGC | 1 cut(s) | 1166 |
| Hin1II | CATG | 5 cut(s) | 204, 981, 1034, 1085, 1256 |
| HincII | GTYRAC | 1 cut(s) | 1270 |
| HindII | GTYRAC | 1 cut(s) | 1270 |
| HinfI | GANTC | 3 cut(s) | 113, 1271, 1402 |
| HpaII | CCGG | 2 cut(s) | 1110, 1304 |
| HphI | GGTGA | 2 cut(s) | 160, 412 |
| Hpy166II | GTNNAC | 2 cut(s) | 532, 1270 |
| Hpy188I | TCNGA | 3 cut(s) | 841, 1452, 1497 |
| Hpy188III | TCNNGA | 3 cut(s) | 587, 1133, 1394 |
| Hpy8I | GTNNAC | 2 cut(s) | 532, 1270 |
| Hpy99I | CGWCG | 1 cut(s) | 1182 |
| HpyAV | CCTTC | 7 cut(s) | 224, 390, 605, 666, 955, 1028, 1391 |
| HpyCH4III | ACNGT | 3 cut(s) | 991, 1433, 1505 |
| HpyCH4IV | ACGT | 1 cut(s) | 181 |
| HpyCH4V | TGCA | 8 cut(s) | 434, 541, 1094, 1170, 1297, 1369, 1412, 1418 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 716, 1321 |
| HpyF3I | CTNAG | 2 cut(s) | 245, 954 |
| HpySE526I | ACGT | 1 cut(s) | 181 |
| Hsp92II | CATG | 5 cut(s) | 204, 981, 1034, 1085, 1256 |
| Ksp22I | TGATCA | 1 cut(s) | 61 |
| Kzo9I | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| LmnI | GCTCC | 2 cut(s) | 700, 1474 |
| Lsp1109I | GCAGC | 3 cut(s) | 1078, 1161, 1333 |
| LweI | GCATC | 2 cut(s) | 884, 1405 |
| MaeI | CTAG | 6 cut(s) | 254, 792, 1229, 1280, 1443, 1466 |
| MaeII | ACGT | 1 cut(s) | 181 |
| MaeIII | GTNAC | 2 cut(s) | 1435, 1499 |
| MalI | GATC | 7 cut(s) | 63, 89, 591, 654, 1137, 1449, 1464 |
| MboI | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| MboII | GAAGA | 9 cut(s) | 297, 300, 415, 675, 870, 1121, 1130, 1266, 1371 |
| MflI | RGATCY | 3 cut(s) | 87, 652, 1462 |
| MhlI | GDGCHC | 3 cut(s) | 25, 246, 705 |
| MlyI | GAGTC | 1 cut(s) | 1265 |
| MmeI | TCCRAC | 1 cut(s) | 149 |
| Mph1103I | ATGCAT | 1 cut(s) | 1420 |
| MseI | TTAA | 5 cut(s) | 264, 914, 942, 1070, 1215 |
| MslI | CAYNNNNRTG | 3 cut(s) | 18, 388, 880 |
| MspI | CCGG | 2 cut(s) | 1110, 1304 |
| MspR9I | CCNGG | 3 cut(s) | 28, 396, 1304 |
| Mva1269I | GAATGC | 3 cut(s) | 436, 721, 1518 |
| MvaI | CCWGG | 2 cut(s) | 28, 396 |
| MvnI | CGCG | 1 cut(s) | 1407 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 716, 1321 |
| NciI | CCSGG | 1 cut(s) | 1304 |
| NdeI | CATATG | 1 cut(s) | 389 |
| NdeII | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| NheI | GCTAGC | 1 cut(s) | 1228 |
| NlaIII | CATG | 5 cut(s) | 204, 981, 1034, 1085, 1256 |
| NlaIV | GGNNCC | 3 cut(s) | 22, 89, 654 |
| NmuCI | GTSAC | 2 cut(s) | 1435, 1499 |
| NsiI | ATGCAT | 1 cut(s) | 1420 |
| NspI | RCATGY | 3 cut(s) | 981, 1085, 1256 |
| NspV | TTCGAA | 1 cut(s) | 334 |
| PciI | ACATGT | 1 cut(s) | 1252 |
| PctI | GAATGC | 3 cut(s) | 436, 721, 1518 |
| PfeI | GAWTC | 2 cut(s) | 113, 1402 |
| PflFI | GACNNNGTC | 1 cut(s) | 1491 |
| PkrI | GCNGC | 3 cut(s) | 1093, 1176, 1323 |
| PleI | GAGTC | 1 cut(s) | 1265 |
| PpsI | GAGTC | 1 cut(s) | 1265 |
| PscI | ACATGT | 1 cut(s) | 1252 |
| PshBI | ATTAAT | 1 cut(s) | 914 |
| Psp124BI | GAGCTC | 1 cut(s) | 705 |
| Psp6I | CCWGG | 2 cut(s) | 26, 394 |
| PspGI | CCWGG | 2 cut(s) | 26, 394 |
| PspN4I | GGNNCC | 3 cut(s) | 22, 89, 654 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PstI | CTGCAG | 1 cut(s) | 1299 |
| PsuI | RGATCY | 3 cut(s) | 87, 652, 1462 |
| PsyI | GACNNNGTC | 1 cut(s) | 1491 |
| RsaI | GTAC | 3 cut(s) | 457, 898, 1183 |
| RsaNI | GTAC | 3 cut(s) | 456, 897, 1182 |
| RseI | CAYNNNNRTG | 3 cut(s) | 18, 388, 880 |
| SacI | GAGCTC | 1 cut(s) | 705 |
| SaqAI | TTAA | 5 cut(s) | 264, 914, 942, 1070, 1215 |
| SatI | GCNGC | 3 cut(s) | 1092, 1175, 1322 |
| Sau3AI | GATC | 7 cut(s) | 61, 87, 589, 652, 1135, 1447, 1462 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 1 cut(s) | 1265 |
| ScrFI | CCNGG | 3 cut(s) | 28, 396, 1304 |
| SduI | GDGCHC | 3 cut(s) | 25, 246, 705 |
| SfaNI | GCATC | 2 cut(s) | 884, 1405 |
| SfcI | CTRYAG | 1 cut(s) | 1295 |
| SfuI | TTCGAA | 1 cut(s) | 334 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 18, 388, 880 |
| SpeI | ACTAGT | 1 cut(s) | 253 |
| SsiI | CCGC | 1 cut(s) | 354 |
| SspMI | CTAG | 6 cut(s) | 254, 792, 1229, 1280, 1443, 1466 |
| SstI | GAGCTC | 1 cut(s) | 705 |
| StyD4I | CCNGG | 3 cut(s) | 26, 394, 1302 |
| StyI | CCWWGG | 1 cut(s) | 1316 |
| TaaI | ACNGT | 3 cut(s) | 991, 1433, 1505 |
| TaiI | ACGT | 1 cut(s) | 184 |
| TaqI | TCGA | 3 cut(s) | 34, 334, 878 |
| TfiI | GAWTC | 2 cut(s) | 113, 1402 |
| Tru1I | TTAA | 5 cut(s) | 264, 914, 942, 1070, 1215 |
| Tru9I | TTAA | 5 cut(s) | 264, 914, 942, 1070, 1215 |
| TscAI | CASTG | 2 cut(s) | 88, 994 |
| TseFI | GTSAC | 2 cut(s) | 1435, 1499 |
| TseI | GCWGC | 3 cut(s) | 1091, 1174, 1321 |
| Tsp45I | GTSAC | 2 cut(s) | 1435, 1499 |
| TspGWI | ACGGA | 2 cut(s) | 80, 1176 |
| TspRI | CASTG | 2 cut(s) | 88, 994 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1491 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| VspI | ATTAAT | 1 cut(s) | 914 |
| XapI | RAATTY | 2 cut(s) | 779, 1519 |
| XceI | RCATGY | 3 cut(s) | 981, 1085, 1256 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 753 |
| XspI | CTAG | 6 cut(s) | 254, 792, 1229, 1280, 1443, 1466 |
| Zsp2I | ATGCAT | 1 cut(s) | 1420 |