Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 205 - 324 | 1.9e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 549 |
| AciI | CCGC | 3 cut(s) | 16, 422, 549 |
| AclI | AACGTT | 1 cut(s) | 742 |
| AcoI | YGGCCR | 2 cut(s) | 34, 587 |
| AcsI | RAATTY | 3 cut(s) | 287, 721, 913 |
| AfaI | GTAC | 2 cut(s) | 331, 903 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 548 |
| AflII | CTTAAG | 1 cut(s) | 868 |
| AgsI | TTSAA | 1 cut(s) | 671 |
| AjnI | CCWGG | 2 cut(s) | 484, 640 |
| AluBI | AGCT | 7 cut(s) | 265, 375, 403, 830, 956, 1024, 1043 |
| AluI | AGCT | 7 cut(s) | 265, 375, 403, 830, 956, 1024, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 1026 |
| Alw26I | GTCTC | 2 cut(s) | 175, 896 |
| AoxI | GGCC | 3 cut(s) | 34, 587, 643 |
| ApeKI | GCWGC | 1 cut(s) | 318 |
| ApoI | RAATTY | 3 cut(s) | 287, 721, 913 |
| AspS9I | GGNCC | 1 cut(s) | 644 |
| AsuC2I | CCSGG | 1 cut(s) | 647 |
| AsuHPI | GGTGA | 4 cut(s) | 272, 382, 457, 560 |
| AsuNHI | GCTAGC | 2 cut(s) | 418, 425 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BalI | TGGCCA | 2 cut(s) | 36, 589 |
| BanII | GRGCYC | 2 cut(s) | 160, 1026 |
| BbsI | GAAGAC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 1026 |
| BbvI | GCAGC | 1 cut(s) | 305 |
| BccI | CCATC | 1 cut(s) | 614 |
| BceAI | ACGGC | 1 cut(s) | 295 |
| BciT130I | CCWGG | 2 cut(s) | 486, 642 |
| BcnI | CCSGG | 1 cut(s) | 647 |
| BcoDI | GTCTC | 2 cut(s) | 175, 896 |
| BfaI | CTAG | 5 cut(s) | 419, 426, 780, 843, 1017 |
| BfmI | CTRYAG | 1 cut(s) | 951 |
| BfrI | CTTAAG | 1 cut(s) | 868 |
| BisI | GCNGC | 3 cut(s) | 17, 319, 423 |
| BlpI | GCTNAGC | 1 cut(s) | 625 |
| BlsI | GCNGC | 3 cut(s) | 18, 320, 424 |
| Bme1390I | CCNGG | 3 cut(s) | 486, 642, 647 |
| BmgT120I | GGNCC | 1 cut(s) | 644 |
| BmiI | GGNNCC | 3 cut(s) | 246, 558, 791 |
| BmrFI | CCNGG | 3 cut(s) | 486, 642, 647 |
| BmsI | GCATC | 4 cut(s) | 307, 499, 664, 998 |
| BmtI | GCTAGC | 2 cut(s) | 422, 429 |
| BpiI | GAAGAC | 1 cut(s) | 516 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 625 |
| BpuEI | CTTGAG | 2 cut(s) | 144, 664 |
| BpuMI | CCSGG | 1 cut(s) | 647 |
| BsaJI | CCNNGG | 4 cut(s) | 152, 599, 860, 973 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 688, 718 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 548 |
| BseBI | CCWGG | 2 cut(s) | 486, 642 |
| BseDI | CCNNGG | 4 cut(s) | 152, 599, 860, 973 |
| BseGI | GGATG | 1 cut(s) | 514 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 548 |
| BseMII | CTCAG | 3 cut(s) | 210, 413, 473 |
| BseRI | GAGGAG | 2 cut(s) | 385, 846 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BseXI | GCAGC | 1 cut(s) | 305 |
| Bsh1236I | CGCG | 1 cut(s) | 549 |
| BshFI | GGCC | 3 cut(s) | 36, 589, 645 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1026 |
| BsiSI | CCGG | 1 cut(s) | 647 |
| BslFI | GGGAC | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 548 |
| BsmAI | GTCTC | 2 cut(s) | 175, 896 |
| BsmFI | GGGAC | 1 cut(s) | 142 |
| BsnI | GGCC | 3 cut(s) | 36, 589, 645 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 160, 1026 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 625 |
| Bsp19I | CCATGG | 1 cut(s) | 860 |
| BspACI | CCGC | 3 cut(s) | 16, 422, 549 |
| BspANI | GGCC | 3 cut(s) | 36, 589, 645 |
| BspCNI | CTCAG | 3 cut(s) | 211, 412, 472 |
| BspFNI | CGCG | 1 cut(s) | 549 |
| BspLI | GGNNCC | 3 cut(s) | 246, 558, 791 |
| BspOI | GCTAGC | 2 cut(s) | 422, 429 |
| BspTI | CTTAAG | 1 cut(s) | 868 |
| BssECI | CCNNGG | 4 cut(s) | 152, 599, 860, 973 |
| BssT1I | CCWWGG | 4 cut(s) | 152, 599, 860, 973 |
| Bst2UI | CCWGG | 2 cut(s) | 486, 642 |
| Bst6I | CTCTTC | 1 cut(s) | 844 |
| BstAFI | CTTAAG | 1 cut(s) | 868 |
| BstC8I | GCNNGC | 4 cut(s) | 34, 420, 427, 832 |
| BstDEI | CTNAG | 6 cut(s) | 219, 305, 399, 459, 470, 625 |
| BstDSI | CCRYGG | 1 cut(s) | 860 |
| BstF5I | GGATG | 1 cut(s) | 514 |
| BstFNI | CGCG | 1 cut(s) | 549 |
| BstMAI | GTCTC | 2 cut(s) | 175, 896 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 16, 642 |
| BstNI | CCWGG | 2 cut(s) | 486, 642 |
| BstNSI | RCATGY | 1 cut(s) | 433 |
| BstSCI | CCNGG | 3 cut(s) | 484, 640, 645 |
| BstSFI | CTRYAG | 1 cut(s) | 951 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstUI | CGCG | 1 cut(s) | 549 |
| BstV1I | GCAGC | 1 cut(s) | 305 |
| BstV2I | GAAGAC | 1 cut(s) | 516 |
| BsuRI | GGCC | 3 cut(s) | 36, 589, 645 |
| BtgI | CCRYGG | 1 cut(s) | 860 |
| BtsCI | GGATG | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 4 cut(s) | 34, 420, 427, 832 |
| Cfr13I | GGNCC | 1 cut(s) | 644 |
| Csp6I | GTAC | 2 cut(s) | 330, 902 |
| CviAII | CATG | 4 cut(s) | 93, 430, 572, 861 |
| CviQI | GTAC | 2 cut(s) | 330, 902 |
| DdeI | CTNAG | 6 cut(s) | 219, 305, 399, 459, 470, 625 |
| EaeI | YGGCCR | 2 cut(s) | 34, 587 |
| Eam1104I | CTCTTC | 1 cut(s) | 844 |
| EarI | CTCTTC | 1 cut(s) | 844 |
| Ecl136II | GAGCTC | 1 cut(s) | 1024 |
| Eco130I | CCWWGG | 4 cut(s) | 152, 599, 860, 973 |
| Eco24I | GRGCYC | 2 cut(s) | 160, 1026 |
| Eco53kI | GAGCTC | 1 cut(s) | 1024 |
| EcoICRI | GAGCTC | 1 cut(s) | 1024 |
| EcoRI | GAATTC | 1 cut(s) | 721 |
| EcoRII | CCWGG | 2 cut(s) | 484, 640 |
| EcoT14I | CCWWGG | 4 cut(s) | 152, 599, 860, 973 |
| EcoT22I | ATGCAT | 1 cut(s) | 991 |
| EcoT38I | GRGCYC | 2 cut(s) | 160, 1026 |
| ErhI | CCWWGG | 4 cut(s) | 152, 599, 860, 973 |
| FaeI | CATG | 4 cut(s) | 96, 433, 575, 864 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FaqI | GGGAC | 1 cut(s) | 142 |
| FatI | CATG | 4 cut(s) | 92, 429, 571, 860 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 319, 423 |
| FokI | GGATG | 1 cut(s) | 521 |
| FriOI | GRGCYC | 2 cut(s) | 160, 1026 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 319, 423 |
| FspBI | CTAG | 5 cut(s) | 419, 426, 780, 843, 1017 |
| GluI | GCNGC | 3 cut(s) | 17, 319, 423 |
| HaeIII | GGCC | 3 cut(s) | 36, 589, 645 |
| HapII | CCGG | 1 cut(s) | 647 |
| Hin1II | CATG | 4 cut(s) | 96, 433, 575, 864 |
| HincII | GTYRAC | 1 cut(s) | 613 |
| HindII | GTYRAC | 1 cut(s) | 613 |
| HinfI | GANTC | 4 cut(s) | 130, 350, 812, 978 |
| HpaII | CCGG | 1 cut(s) | 647 |
| HphI | GGTGA | 4 cut(s) | 272, 382, 457, 560 |
| Hpy166II | GTNNAC | 3 cut(s) | 435, 568, 613 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 192, 229, 277, 349, 462, 739 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 506, 671, 681 |
| Hpy8I | GTNNAC | 3 cut(s) | 435, 568, 613 |
| HpyAV | CCTTC | 6 cut(s) | 176, 258, 280, 448, 739, 935 |
| HpyCH4IV | ACGT | 1 cut(s) | 742 |
| HpyCH4V | TGCA | 2 cut(s) | 52, 989 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 16, 642 |
| HpyF3I | CTNAG | 6 cut(s) | 219, 305, 399, 459, 470, 625 |
| HpySE526I | ACGT | 1 cut(s) | 742 |
| Hsp92II | CATG | 4 cut(s) | 96, 433, 575, 864 |
| LmnI | GCTCC | 5 cut(s) | 244, 487, 544, 562, 1029 |
| Lsp1109I | GCAGC | 1 cut(s) | 305 |
| LweI | GCATC | 4 cut(s) | 307, 499, 664, 998 |
| MaeI | CTAG | 5 cut(s) | 419, 426, 780, 843, 1017 |
| MaeII | ACGT | 1 cut(s) | 742 |
| MaeIII | GTNAC | 3 cut(s) | 119, 142, 708 |
| MboII | GAAGA | 6 cut(s) | 243, 333, 336, 516, 717, 831 |
| MhlI | GDGCHC | 3 cut(s) | 100, 160, 1026 |
| MlsI | TGGCCA | 2 cut(s) | 36, 589 |
| MluNI | TGGCCA | 2 cut(s) | 36, 589 |
| MlyI | GAGTC | 2 cut(s) | 124, 344 |
| MmeI | TCCRAC | 2 cut(s) | 339, 783 |
| MnlI | CCTC | 9 cut(s) | 179, 222, 265, 406, 677, 688, 776, 867, 1023 |
| Mox20I | TGGCCA | 2 cut(s) | 36, 589 |
| Mph1103I | ATGCAT | 1 cut(s) | 991 |
| MscI | TGGCCA | 2 cut(s) | 36, 589 |
| MseI | TTAA | 3 cut(s) | 86, 408, 869 |
| Msp20I | TGGCCA | 2 cut(s) | 36, 589 |
| MspCI | CTTAAG | 1 cut(s) | 868 |
| MspI | CCGG | 1 cut(s) | 647 |
| MspR9I | CCNGG | 3 cut(s) | 486, 642, 647 |
| MvaI | CCWGG | 2 cut(s) | 486, 642 |
| MvnI | CGCG | 1 cut(s) | 549 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 16, 642 |
| NciI | CCSGG | 1 cut(s) | 647 |
| NcoI | CCATGG | 1 cut(s) | 860 |
| NheI | GCTAGC | 2 cut(s) | 418, 425 |
| NlaIII | CATG | 4 cut(s) | 96, 433, 575, 864 |
| NlaIV | GGNNCC | 3 cut(s) | 246, 558, 791 |
| NmuCI | GTSAC | 1 cut(s) | 708 |
| NsiI | ATGCAT | 1 cut(s) | 991 |
| NspI | RCATGY | 1 cut(s) | 433 |
| PfeI | GAWTC | 2 cut(s) | 812, 978 |
| PkrI | GCNGC | 3 cut(s) | 18, 320, 424 |
| PleI | GAGTC | 2 cut(s) | 124, 344 |
| PpsI | GAGTC | 2 cut(s) | 124, 344 |
| Psp124BI | GAGCTC | 1 cut(s) | 1026 |
| Psp1406I | AACGTT | 1 cut(s) | 742 |
| Psp6I | CCWGG | 2 cut(s) | 484, 640 |
| PspGI | CCWGG | 2 cut(s) | 484, 640 |
| PspN4I | GGNNCC | 3 cut(s) | 246, 558, 791 |
| PspPI | GGNCC | 1 cut(s) | 644 |
| RsaI | GTAC | 2 cut(s) | 331, 903 |
| RsaNI | GTAC | 2 cut(s) | 330, 902 |
| SacI | GAGCTC | 1 cut(s) | 1026 |
| SaqAI | TTAA | 3 cut(s) | 86, 408, 869 |
| SatI | GCNGC | 3 cut(s) | 17, 319, 423 |
| Sau96I | GGNCC | 1 cut(s) | 644 |
| SchI | GAGTC | 2 cut(s) | 124, 344 |
| ScrFI | CCNGG | 3 cut(s) | 486, 642, 647 |
| SduI | GDGCHC | 3 cut(s) | 100, 160, 1026 |
| SfaNI | GCATC | 4 cut(s) | 307, 499, 664, 998 |
| SfcI | CTRYAG | 1 cut(s) | 951 |
| SmlI | CTYRAG | 3 cut(s) | 159, 679, 868 |
| SmoI | CTYRAG | 3 cut(s) | 159, 679, 868 |
| SsiI | CCGC | 3 cut(s) | 16, 422, 549 |
| SspMI | CTAG | 5 cut(s) | 419, 426, 780, 843, 1017 |
| SstI | GAGCTC | 1 cut(s) | 1026 |
| StyD4I | CCNGG | 3 cut(s) | 484, 640, 645 |
| StyI | CCWWGG | 4 cut(s) | 152, 599, 860, 973 |
| TaiI | ACGT | 1 cut(s) | 745 |
| TaqI | TCGA | 4 cut(s) | 133, 382, 765, 919 |
| TatI | WGTACW | 2 cut(s) | 329, 901 |
| TauI | GCSGC | 2 cut(s) | 19, 425 |
| TfiI | GAWTC | 2 cut(s) | 812, 978 |
| Tru1I | TTAA | 3 cut(s) | 86, 408, 869 |
| Tru9I | TTAA | 3 cut(s) | 86, 408, 869 |
| TseFI | GTSAC | 1 cut(s) | 708 |
| TseI | GCWGC | 1 cut(s) | 318 |
| Tsp45I | GTSAC | 1 cut(s) | 708 |
| TspDTI | ATGAA | 3 cut(s) | 300, 926, 1065 |
| Vha464I | CTTAAG | 1 cut(s) | 868 |
| XapI | RAATTY | 3 cut(s) | 287, 721, 913 |
| XceI | RCATGY | 1 cut(s) | 433 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 597 |
| XspI | CTAG | 5 cut(s) | 419, 426, 780, 843, 1017 |
| Zsp2I | ATGCAT | 1 cut(s) | 991 |