Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu_bind_like | PF02298 | 33 - 113 | 2e-15 | Plastocyanin-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 299 |
| AccB1I | GGYRCC | 1 cut(s) | 299 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 251 |
| AccII | CGCG | 1 cut(s) | 187 |
| AclWI | GGATC | 1 cut(s) | 263 |
| AdeI | CACNNNGTG | 1 cut(s) | 196 |
| AfaI | GTAC | 2 cut(s) | 224, 301 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 251, 296 |
| AflIII | ACRYGT | 1 cut(s) | 314 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| AlwI | GGATC | 1 cut(s) | 263 |
| ApeKI | GCWGC | 4 cut(s) | 17, 206, 239, 270 |
| Asp718I | GGTACC | 1 cut(s) | 299 |
| AsuC2I | CCSGG | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| BanI | GGYRCC | 1 cut(s) | 299 |
| BbvI | GCAGC | 4 cut(s) | 4, 218, 226, 282 |
| BcnI | CCSGG | 1 cut(s) | 92 |
| BisI | GCNGC | 4 cut(s) | 18, 207, 240, 271 |
| BlsI | GCNGC | 4 cut(s) | 19, 208, 241, 272 |
| Bme1390I | CCNGG | 1 cut(s) | 92 |
| BmiI | GGNNCC | 1 cut(s) | 301 |
| BmrFI | CCNGG | 1 cut(s) | 92 |
| BmsI | GCATC | 2 cut(s) | 208, 226 |
| BpuMI | CCSGG | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 2 cut(s) | 91, 294 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 251, 296 |
| BseDI | CCNNGG | 2 cut(s) | 91, 294 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 251, 296 |
| BseXI | GCAGC | 4 cut(s) | 4, 218, 226, 282 |
| Bsh1236I | CGCG | 1 cut(s) | 187 |
| BshNI | GGYRCC | 1 cut(s) | 299 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BsiWI | CGTACG | 1 cut(s) | 222 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 251, 296 |
| Bsp143I | GATC | 1 cut(s) | 255 |
| BspFNI | CGCG | 1 cut(s) | 187 |
| BspLI | GGNNCC | 1 cut(s) | 301 |
| BspPI | GGATC | 1 cut(s) | 263 |
| BspT107I | GGYRCC | 1 cut(s) | 299 |
| BssECI | CCNNGG | 2 cut(s) | 91, 294 |
| BssMI | GATC | 1 cut(s) | 255 |
| BstDSI | CCRYGG | 1 cut(s) | 294 |
| BstFNI | CGCG | 1 cut(s) | 187 |
| BstKTI | GATC | 1 cut(s) | 258 |
| BstMBI | GATC | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 41 |
| BstNSI | RCATGY | 1 cut(s) | 318 |
| BstSCI | CCNGG | 1 cut(s) | 90 |
| BstUI | CGCG | 1 cut(s) | 187 |
| BstV1I | GCAGC | 4 cut(s) | 4, 218, 226, 282 |
| BstX2I | RGATCY | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 255 |
| BtgI | CCRYGG | 1 cut(s) | 294 |
| BtgZI | GCGATG | 1 cut(s) | 288 |
| CseI | GACGC | 1 cut(s) | 176 |
| Csp6I | GTAC | 2 cut(s) | 223, 300 |
| CviAII | CATG | 3 cut(s) | 58, 146, 315 |
| CviJI | RGCY | 1 cut(s) | 209 |
| CviKI_1 | RGCY | 1 cut(s) | 209 |
| CviQI | GTAC | 2 cut(s) | 223, 300 |
| DpnI | GATC | 1 cut(s) | 257 |
| DpnII | GATC | 1 cut(s) | 255 |
| DraIII | CACNNNGTG | 1 cut(s) | 196 |
| FaeI | CATG | 3 cut(s) | 61, 149, 318 |
| FaiI | YATR | 7 cut(s) | 59, 75, 147, 182, 252, 316, 324 |
| FatI | CATG | 3 cut(s) | 57, 145, 314 |
| Fnu4HI | GCNGC | 4 cut(s) | 18, 207, 240, 271 |
| Fsp4HI | GCNGC | 4 cut(s) | 18, 207, 240, 271 |
| GluI | GCNGC | 4 cut(s) | 18, 207, 240, 271 |
| HapII | CCGG | 1 cut(s) | 91 |
| HgaI | GACGC | 1 cut(s) | 176 |
| Hin1II | CATG | 3 cut(s) | 61, 149, 318 |
| HinfI | GANTC | 1 cut(s) | 155 |
| HpaII | CCGG | 1 cut(s) | 91 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 2 cut(s) | 54, 217 |
| Hpy188III | TCNNGA | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 1 cut(s) | 20 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 41 |
| Hsp92II | CATG | 3 cut(s) | 61, 149, 318 |
| KpnI | GGTACC | 1 cut(s) | 303 |
| Kzo9I | GATC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 3 cut(s) | 104, 185, 244 |
| Lsp1109I | GCAGC | 4 cut(s) | 4, 218, 226, 282 |
| LweI | GCATC | 2 cut(s) | 208, 226 |
| MaeIII | GTNAC | 2 cut(s) | 188, 329 |
| MalI | GATC | 1 cut(s) | 257 |
| MboI | GATC | 1 cut(s) | 255 |
| MboII | GAAGA | 1 cut(s) | 355 |
| MflI | RGATCY | 1 cut(s) | 255 |
| MluCI | AATT | 2 cut(s) | 211, 229 |
| MmeI | TCCRAC | 3 cut(s) | 77, 130, 200 |
| MnlI | CCTC | 1 cut(s) | 55 |
| MseI | TTAA | 1 cut(s) | 348 |
| MspI | CCGG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 1 cut(s) | 92 |
| MvnI | CGCG | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 41 |
| NciI | CCSGG | 1 cut(s) | 92 |
| NdeII | GATC | 1 cut(s) | 255 |
| NlaIII | CATG | 3 cut(s) | 61, 149, 318 |
| NlaIV | GGNNCC | 1 cut(s) | 301 |
| NmuCI | GTSAC | 2 cut(s) | 188, 329 |
| NspI | RCATGY | 1 cut(s) | 318 |
| PciI | ACATGT | 1 cut(s) | 314 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| Pfl23II | CGTACG | 1 cut(s) | 222 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 251 |
| PkrI | GCNGC | 4 cut(s) | 19, 208, 241, 272 |
| PscI | ACATGT | 1 cut(s) | 314 |
| PspLI | CGTACG | 1 cut(s) | 222 |
| PspN4I | GGNNCC | 1 cut(s) | 301 |
| PsuI | RGATCY | 1 cut(s) | 255 |
| RsaI | GTAC | 2 cut(s) | 224, 301 |
| RsaNI | GTAC | 2 cut(s) | 223, 300 |
| SaqAI | TTAA | 1 cut(s) | 348 |
| SatI | GCNGC | 4 cut(s) | 18, 207, 240, 271 |
| Sau3AI | GATC | 1 cut(s) | 255 |
| ScrFI | CCNGG | 1 cut(s) | 92 |
| SetI | ASST | 4 cut(s) | 211, 287, 305, 354 |
| SfaNI | GCATC | 2 cut(s) | 208, 226 |
| Sse9I | AATT | 2 cut(s) | 211, 229 |
| StyD4I | CCNGG | 1 cut(s) | 90 |
| TasI | AATT | 2 cut(s) | 211, 229 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 348 |
| Tru9I | TTAA | 1 cut(s) | 348 |
| TseFI | GTSAC | 2 cut(s) | 188, 329 |
| TseI | GCWGC | 4 cut(s) | 17, 206, 239, 270 |
| Tsp45I | GTSAC | 2 cut(s) | 188, 329 |
| TspDTI | ATGAA | 2 cut(s) | 134, 157 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 251 |
| XceI | RCATGY | 1 cut(s) | 318 |