Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 125 - 241 | 5.4e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 342 |
| AciI | CCGC | 1 cut(s) | 773 |
| AclWI | GGATC | 1 cut(s) | 49 |
| AcoI | YGGCCR | 1 cut(s) | 387 |
| AfaI | GTAC | 2 cut(s) | 22, 262 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 38, 58, 562 |
| AgsI | TTSAA | 3 cut(s) | 576, 590, 757 |
| AjnI | CCWGG | 1 cut(s) | 244 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 474, 506 |
| AluBI | AGCT | 4 cut(s) | 179, 215, 502, 744 |
| AluI | AGCT | 4 cut(s) | 179, 215, 502, 744 |
| Alw21I | GWGCWC | 2 cut(s) | 181, 746 |
| Alw26I | GTCTC | 1 cut(s) | 449 |
| AlwI | GGATC | 1 cut(s) | 49 |
| AoxI | GGCC | 2 cut(s) | 387, 404 |
| ApeKI | GCWGC | 2 cut(s) | 113, 410 |
| AspS9I | GGNCC | 3 cut(s) | 233, 404, 478 |
| AsuC2I | CCSGG | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 2 cut(s) | 260, 545 |
| AsuII | TTCGAA | 1 cut(s) | 430 |
| AvaII | GGWCC | 2 cut(s) | 233, 478 |
| BalI | TGGCCA | 1 cut(s) | 389 |
| BanI | GGYRCC | 1 cut(s) | 342 |
| BanII | GRGCYC | 2 cut(s) | 181, 746 |
| BbsI | GAAGAC | 1 cut(s) | 809 |
| Bbv12I | GWGCWC | 2 cut(s) | 181, 746 |
| BbvI | GCAGC | 2 cut(s) | 100, 397 |
| BccI | CCATC | 3 cut(s) | 125, 127, 540 |
| BciT130I | CCWGG | 1 cut(s) | 246 |
| BcnI | CCSGG | 1 cut(s) | 402 |
| BcoDI | GTCTC | 1 cut(s) | 449 |
| BfaI | CTAG | 1 cut(s) | 68 |
| BisI | GCNGC | 2 cut(s) | 114, 411 |
| BlsI | GCNGC | 2 cut(s) | 115, 412 |
| Bme1390I | CCNGG | 2 cut(s) | 246, 402 |
| Bme18I | GGWCC | 2 cut(s) | 233, 478 |
| BmgT120I | GGNCC | 3 cut(s) | 233, 404, 478 |
| BmiI | GGNNCC | 3 cut(s) | 344, 405, 479 |
| BmrFI | CCNGG | 2 cut(s) | 246, 402 |
| BmsI | GCATC | 2 cut(s) | 241, 671 |
| BpiI | GAAGAC | 1 cut(s) | 809 |
| BpmI | CTGGAG | 2 cut(s) | 584, 762 |
| Bpu10I | CCTNAGC | 1 cut(s) | 438 |
| Bpu14I | TTCGAA | 1 cut(s) | 430 |
| BpuEI | CTTGAG | 1 cut(s) | 673 |
| BpuMI | CCSGG | 1 cut(s) | 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 137 |
| BsaI | GGTCTC | 1 cut(s) | 449 |
| BsaJI | CCNNGG | 5 cut(s) | 37, 390, 401, 466, 620 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 38, 58, 562 |
| Bse1I | ACTGG | 1 cut(s) | 779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 137 |
| BseBI | CCWGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 5 cut(s) | 37, 390, 401, 466, 620 |
| BseGI | GGATG | 2 cut(s) | 117, 551 |
| BseJI | GATNNNNATC | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 38, 58, 562 |
| BseMII | CTCAG | 1 cut(s) | 617 |
| BseNI | ACTGG | 1 cut(s) | 779 |
| BseRI | GAGGAG | 1 cut(s) | 339 |
| BseXI | GCAGC | 2 cut(s) | 100, 397 |
| BshFI | GGCC | 2 cut(s) | 389, 406 |
| BshNI | GGYRCC | 1 cut(s) | 342 |
| BsiHKAI | GWGCWC | 2 cut(s) | 181, 746 |
| BsiSI | CCGG | 1 cut(s) | 401 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 38, 58, 562 |
| BsmAI | GTCTC | 1 cut(s) | 449 |
| BsnI | GGCC | 2 cut(s) | 389, 406 |
| Bso31I | GGTCTC | 1 cut(s) | 449 |
| Bsp119I | TTCGAA | 1 cut(s) | 430 |
| Bsp1286I | GDGCHC | 2 cut(s) | 181, 746 |
| Bsp143I | GATC | 3 cut(s) | 41, 526, 783 |
| BspACI | CCGC | 1 cut(s) | 773 |
| BspANI | GGCC | 2 cut(s) | 389, 406 |
| BspCNI | CTCAG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 3 cut(s) | 344, 405, 479 |
| BspPI | GGATC | 1 cut(s) | 49 |
| BspQI | GCTCTTC | 1 cut(s) | 751 |
| BspT104I | TTCGAA | 1 cut(s) | 430 |
| BspT107I | GGYRCC | 1 cut(s) | 342 |
| BspTNI | GGTCTC | 1 cut(s) | 449 |
| BsrI | ACTGG | 1 cut(s) | 779 |
| BssECI | CCNNGG | 5 cut(s) | 37, 390, 401, 466, 620 |
| BssMI | GATC | 3 cut(s) | 41, 526, 783 |
| BssT1I | CCWWGG | 3 cut(s) | 37, 390, 466 |
| Bst2UI | CCWGG | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 4 cut(s) | 265, 276, 712, 811 |
| Bst6I | CTCTTC | 2 cut(s) | 192, 751 |
| BstBI | TTCGAA | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 408 |
| BstDEI | CTNAG | 2 cut(s) | 438, 603 |
| BstDSI | CCRYGG | 1 cut(s) | 620 |
| BstEII | GGTNACC | 1 cut(s) | 789 |
| BstF5I | GGATG | 2 cut(s) | 117, 551 |
| BstKTI | GATC | 3 cut(s) | 44, 529, 786 |
| BstMAI | GTCTC | 1 cut(s) | 449 |
| BstMBI | GATC | 3 cut(s) | 41, 526, 783 |
| BstNI | CCWGG | 1 cut(s) | 246 |
| BstPI | GGTNACC | 1 cut(s) | 789 |
| BstSCI | CCNGG | 2 cut(s) | 244, 400 |
| BstV1I | GCAGC | 2 cut(s) | 100, 397 |
| BstV2I | GAAGAC | 1 cut(s) | 809 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 473, 786 |
| BsuRI | GGCC | 2 cut(s) | 389, 406 |
| BtgI | CCRYGG | 1 cut(s) | 620 |
| BtsCI | GGATG | 2 cut(s) | 117, 551 |
| BtsIMutI | CAGTG | 2 cut(s) | 270, 786 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 408 |
| Cfr13I | GGNCC | 3 cut(s) | 233, 404, 478 |
| Csp6I | GTAC | 2 cut(s) | 21, 261 |
| CviAII | CATG | 2 cut(s) | 360, 494 |
| CviQI | GTAC | 2 cut(s) | 21, 261 |
| DdeI | CTNAG | 2 cut(s) | 438, 603 |
| DpnI | GATC | 3 cut(s) | 43, 528, 785 |
| DpnII | GATC | 3 cut(s) | 41, 526, 783 |
| DraI | TTTAAA | 1 cut(s) | 538 |
| EaeI | YGGCCR | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 2 cut(s) | 192, 751 |
| EarI | CTCTTC | 2 cut(s) | 192, 751 |
| Ecl136II | GAGCTC | 2 cut(s) | 179, 744 |
| Eco130I | CCWWGG | 3 cut(s) | 37, 390, 466 |
| Eco24I | GRGCYC | 2 cut(s) | 181, 746 |
| Eco31I | GGTCTC | 1 cut(s) | 449 |
| Eco47I | GGWCC | 2 cut(s) | 233, 478 |
| Eco53kI | GAGCTC | 2 cut(s) | 179, 744 |
| Eco91I | GGTNACC | 1 cut(s) | 789 |
| EcoICRI | GAGCTC | 2 cut(s) | 179, 744 |
| EcoO109I | RGGNCCY | 2 cut(s) | 233, 404 |
| EcoO65I | GGTNACC | 1 cut(s) | 789 |
| EcoRII | CCWGG | 1 cut(s) | 244 |
| EcoT14I | CCWWGG | 3 cut(s) | 37, 390, 466 |
| EcoT22I | ATGCAT | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 2 cut(s) | 181, 746 |
| ErhI | CCWWGG | 3 cut(s) | 37, 390, 466 |
| FaeI | CATG | 2 cut(s) | 363, 497 |
| FatI | CATG | 2 cut(s) | 359, 493 |
| FauI | CCCGC | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 411 |
| FokI | GGATG | 2 cut(s) | 104, 558 |
| FriOI | GRGCYC | 2 cut(s) | 181, 746 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 411 |
| FspBI | CTAG | 1 cut(s) | 68 |
| GluI | GCNGC | 2 cut(s) | 114, 411 |
| GsuI | CTGGAG | 2 cut(s) | 584, 762 |
| HaeIII | GGCC | 2 cut(s) | 389, 406 |
| HapII | CCGG | 1 cut(s) | 401 |
| Hin1II | CATG | 2 cut(s) | 363, 497 |
| HindIII | AAGCTT | 1 cut(s) | 213 |
| HinfI | GANTC | 6 cut(s) | 159, 423, 572, 634, 655, 719 |
| HpaII | CCGG | 1 cut(s) | 401 |
| HphI | GGTGA | 2 cut(s) | 260, 545 |
| Hpy188III | TCNNGA | 2 cut(s) | 142, 698 |
| Hpy99I | CGWCG | 1 cut(s) | 815 |
| HpyAV | CCTTC | 3 cut(s) | 139, 192, 291 |
| HpyCH4III | ACNGT | 4 cut(s) | 265, 276, 712, 811 |
| HpyCH4V | TGCA | 7 cut(s) | 9, 226, 359, 497, 533, 716, 799 |
| HpyF3I | CTNAG | 2 cut(s) | 438, 603 |
| Hsp92II | CATG | 2 cut(s) | 363, 497 |
| Kzo9I | GATC | 3 cut(s) | 41, 526, 783 |
| LguI | GCTCTTC | 1 cut(s) | 751 |
| LmnI | GCTCC | 3 cut(s) | 184, 304, 689 |
| Lsp1109I | GCAGC | 2 cut(s) | 100, 397 |
| LweI | GCATC | 2 cut(s) | 241, 671 |
| MaeI | CTAG | 1 cut(s) | 68 |
| MaeIII | GTNAC | 2 cut(s) | 627, 789 |
| MalI | GATC | 3 cut(s) | 43, 528, 785 |
| MboI | GATC | 3 cut(s) | 41, 526, 783 |
| MboII | GAAGA | 5 cut(s) | 78, 179, 578, 738, 809 |
| MhlI | GDGCHC | 2 cut(s) | 181, 746 |
| MlsI | TGGCCA | 1 cut(s) | 389 |
| MluCI | AATT | 5 cut(s) | 92, 368, 471, 522, 646 |
| MluNI | TGGCCA | 1 cut(s) | 389 |
| MlyI | GAGTC | 5 cut(s) | 153, 432, 628, 664, 713 |
| MnlI | CCTC | 8 cut(s) | 318, 357, 360, 449, 566, 627, 694, 786 |
| Mox20I | TGGCCA | 1 cut(s) | 389 |
| Mph1103I | ATGCAT | 1 cut(s) | 228 |
| MscI | TGGCCA | 1 cut(s) | 389 |
| MseI | TTAA | 4 cut(s) | 371, 537, 645, 835 |
| MslI | CAYNNNNRTG | 1 cut(s) | 757 |
| Msp20I | TGGCCA | 1 cut(s) | 389 |
| MspI | CCGG | 1 cut(s) | 401 |
| MspR9I | CCNGG | 2 cut(s) | 246, 402 |
| MvaI | CCWGG | 1 cut(s) | 246 |
| NciI | CCSGG | 1 cut(s) | 402 |
| NdeII | GATC | 3 cut(s) | 41, 526, 783 |
| NlaIII | CATG | 2 cut(s) | 363, 497 |
| NlaIV | GGNNCC | 3 cut(s) | 344, 405, 479 |
| NsiI | ATGCAT | 1 cut(s) | 228 |
| NspV | TTCGAA | 1 cut(s) | 430 |
| PciSI | GCTCTTC | 1 cut(s) | 751 |
| PfeI | GAWTC | 1 cut(s) | 572 |
| PflFI | GACNNNGTC | 1 cut(s) | 809 |
| PkrI | GCNGC | 2 cut(s) | 115, 412 |
| PleI | GAGTC | 5 cut(s) | 153, 431, 628, 663, 713 |
| PpsI | GAGTC | 5 cut(s) | 153, 431, 628, 663, 713 |
| PpuMI | RGGWCCY | 1 cut(s) | 233 |
| Psp124BI | GAGCTC | 2 cut(s) | 181, 746 |
| Psp5II | RGGWCCY | 1 cut(s) | 233 |
| Psp6I | CCWGG | 1 cut(s) | 244 |
| PspEI | GGTNACC | 1 cut(s) | 789 |
| PspGI | CCWGG | 1 cut(s) | 244 |
| PspN4I | GGNNCC | 3 cut(s) | 344, 405, 479 |
| PspPI | GGNCC | 3 cut(s) | 233, 404, 478 |
| PspPPI | RGGWCCY | 1 cut(s) | 233 |
| PsyI | GACNNNGTC | 1 cut(s) | 809 |
| RsaI | GTAC | 2 cut(s) | 22, 262 |
| RsaNI | GTAC | 2 cut(s) | 21, 261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 757 |
| SacI | GAGCTC | 2 cut(s) | 181, 746 |
| SapI | GCTCTTC | 1 cut(s) | 751 |
| SaqAI | TTAA | 4 cut(s) | 371, 537, 645, 835 |
| SatI | GCNGC | 2 cut(s) | 114, 411 |
| Sau3AI | GATC | 3 cut(s) | 41, 526, 783 |
| Sau96I | GGNCC | 3 cut(s) | 233, 404, 478 |
| SchI | GAGTC | 5 cut(s) | 153, 432, 628, 664, 713 |
| ScrFI | CCNGG | 2 cut(s) | 246, 402 |
| SduI | GDGCHC | 2 cut(s) | 181, 746 |
| SfaNI | GCATC | 2 cut(s) | 241, 671 |
| SfuI | TTCGAA | 1 cut(s) | 430 |
| SinI | GGWCC | 2 cut(s) | 233, 478 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 757 |
| SmlI | CTYRAG | 1 cut(s) | 652 |
| SmoI | CTYRAG | 1 cut(s) | 652 |
| Sse9I | AATT | 5 cut(s) | 92, 368, 471, 522, 646 |
| SsiI | CCGC | 1 cut(s) | 773 |
| SspMI | CTAG | 1 cut(s) | 68 |
| SstI | GAGCTC | 2 cut(s) | 181, 746 |
| StyD4I | CCNGG | 2 cut(s) | 244, 400 |
| StyI | CCWWGG | 3 cut(s) | 37, 390, 466 |
| TaaI | ACNGT | 4 cut(s) | 265, 276, 712, 811 |
| TaqI | TCGA | 4 cut(s) | 151, 190, 310, 430 |
| TaqII | GACCGA | 1 cut(s) | 803 |
| TasI | AATT | 5 cut(s) | 92, 368, 471, 522, 646 |
| TfiI | GAWTC | 1 cut(s) | 572 |
| Tru1I | TTAA | 4 cut(s) | 371, 537, 645, 835 |
| Tru9I | TTAA | 4 cut(s) | 371, 537, 645, 835 |
| TscAI | CASTG | 2 cut(s) | 270, 786 |
| TseI | GCWGC | 2 cut(s) | 113, 410 |
| TspDTI | ATGAA | 2 cut(s) | 482, 738 |
| TspGWI | ACGGA | 2 cut(s) | 609, 646 |
| TspRI | CASTG | 2 cut(s) | 270, 786 |
| Tth111I | GACNNNGTC | 1 cut(s) | 809 |
| VpaK11BI | GGWCC | 2 cut(s) | 233, 478 |
| XspI | CTAG | 1 cut(s) | 68 |
| Zsp2I | ATGCAT | 1 cut(s) | 228 |