Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002541.1

Orthogroup ID

OG0023087

Physical Location & Seq

Genomic Coordinates Forward (+)

120665 .. 126049

Gene Structure 5385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002541.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ctgggattttcttcaccctcaccacctcccccctccgccggccttcgccccccatttcttccccccccgcctttccacgccggccctcctcctccggccgccggtcctcccttcgacccggagctccacaaacggatcgacaaggtcgtcgagtactccgccaagaacggacccgacttcgaagccatgattcgcgagaagcagcaggataatcccgactacgctttcctcttcggcagcgaaggccacggctacgcctctactcgggttgtgtcgttcaacccgaatcctcaatcccctccccacatgcttcgtcctccgctgaatccgatgatgaatgggccgccgaacccgatgatgggtggcccgcagtcgtatttctacgaccagcagaggcataatcaacagcctttcggagtttatgggaggtccgattatgaccaggcggcggtgcaaccctttaaagggctttcagggccgctgcctcctgatgttgcaatggagctgagcaatgtgcttatgacgctgaatgggaccaaagagtcgattaaaggagccaagttttggtttatgcagaggtctattttcgctccggctctggctgaggctcttagagagagggtgtttggacttgatgatcctgagaggcagctacatgtgaaaccagtagggatcacgattcatgaagacagtgatgtgaagtgggtgaagatgaaccggagacagaaagcagtggaagaacaagtttatagaggattggccgccgataattaccgggggttcttcctcgagaaggcgatagaatatatcaagatcgatcgacatgtcctcgccgtcgaaatcctcgccggcaaatccaccggcggcactccaattagaactcttcttcgccatcaacataattccagaaactcaaacaccaacctaggtctcctcctccgcagctgcgctgtcgtaaagccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

321

Amino Acids

35.69

Weight (kDa)

9.18

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023087)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8060778.1_g000001 Rmu_sc0002541.1_g000032
rosa_rugosa	Rorug04G0446400
rosa_wichuraiana	Rw7G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	146, 541
AccB7I	CCANNNNNTGG	1 cut(s)	564
AccII	CGCG	1 cut(s)	195
AclWI	GGATC	3 cut(s)	143, 632, 680
AcoI	YGGCCR	2 cut(s)	96, 759
AfaI	GTAC	1 cut(s)	155
AflIII	ACRYGT	2 cut(s)	655, 823
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	124, 505, 652, 945
AluI	AGCT	4 cut(s)	124, 505, 652, 945
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	715, 935
AlwI	GGATC	3 cut(s)	143, 632, 680
Ama87I	CYCGRG	2 cut(s)	264, 788
AoxI	GGCC	8 cut(s)	40, 82, 96, 244, 341, 364, 476, 759
ApeKI	GCWGC	6 cut(s)	202, 237, 481, 649, 942, 945
AspA2I	CCTAGG	1 cut(s)	925
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	8 cut(s)	83, 104, 170, 341, 365, 429, 476, 534
AsuC2I	CCSGG	2 cut(s)	119, 776
AsuHPI	GGTGA	3 cut(s)	6, 12, 718
AsuII	TTCGAA	1 cut(s)	180
AvaI	CYCGRG	2 cut(s)	264, 788
AvaII	GGWCC	4 cut(s)	104, 170, 429, 534
AvrII	CCTAGG	1 cut(s)	925
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	6 cut(s)	214, 249, 468, 661, 932, 954
BccI	CCATC	2 cut(s)	352, 900
BceAI	ACGGC	2 cut(s)	265, 818
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	2 cut(s)	119, 776
BcoDI	GTCTC	2 cut(s)	715, 935
BfaI	CTAG	2 cut(s)	926, 964
BlnI	CCTAGG	1 cut(s)	925
BlpI	GCTNAGC	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	3 cut(s)	119, 443, 776
Bme18I	GGWCC	4 cut(s)	104, 170, 429, 534
BmeT110I	CYCGRG	2 cut(s)	264, 788
BmgT120I	GGNCC	8 cut(s)	83, 104, 170, 341, 365, 429, 476, 534
BmiI	GGNNCC	3 cut(s)	172, 535, 556
BmrFI	CCNGG	3 cut(s)	119, 443, 776
BpiI	GAAGAC	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	119, 776
Bsa29I	ATCGAT	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	935
BsaJI	CCNNGG	3 cut(s)	247, 775, 925
BsaWI	WCCGGW	1 cut(s)	717
Bse118I	RCCGGY	5 cut(s)	38, 80, 101, 848, 860
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	504, 517
BseBI	CCWGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	816
BseDI	CCNNGG	3 cut(s)	247, 775, 925
BseMI	GCAATG	2 cut(s)	504, 517
BseMII	CTCAG	3 cut(s)	497, 594, 633
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	4 cut(s)	78, 81, 923, 926
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	214, 249, 468, 661, 932, 954
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	2 cut(s)	99, 820
BshFI	GGCC	8 cut(s)	42, 84, 98, 246, 343, 366, 478, 761
BshVI	ATCGAT	1 cut(s)	816
BsiEI	CGRYCG	2 cut(s)	99, 820
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	264, 788
BslFI	GGGAC	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	715, 935
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	8 cut(s)	42, 84, 98, 246, 343, 366, 478, 761
Bso31I	GGTCTC	1 cut(s)	935
BsoBI	CYCGRG	2 cut(s)	264, 788
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	135, 637, 672, 813, 817
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp68I	TCGCGA	1 cut(s)	195
BspANI	GGCC	8 cut(s)	42, 84, 98, 246, 343, 366, 478, 761
BspCNI	CTCAG	3 cut(s)	498, 595, 634
BspDI	ATCGAT	1 cut(s)	816
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	172, 535, 556
BspPI	GGATC	3 cut(s)	143, 632, 680
BspT104I	TTCGAA	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	935
BsrDI	GCAATG	2 cut(s)	504, 517
BsrFI	RCCGGY	5 cut(s)	38, 80, 101, 848, 860
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	5 cut(s)	38, 80, 101, 848, 860
BssECI	CCNNGG	3 cut(s)	247, 775, 925
BssMI	GATC	5 cut(s)	135, 637, 672, 813, 817
BssT1I	CCWWGG	1 cut(s)	925
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	236, 888
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	40, 82, 368, 850
BstDEI	CTNAG	4 cut(s)	506, 603, 611, 642
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	5 cut(s)	138, 640, 675, 816, 820
BstMAI	GTCTC	2 cut(s)	715, 935
BstMBI	GATC	5 cut(s)	135, 637, 672, 813, 817
BstMCI	CGRYCG	2 cut(s)	99, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 475, 523
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	3 cut(s)	310, 659, 827
BstSCI	CCNGG	3 cut(s)	117, 441, 774
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	6 cut(s)	214, 249, 468, 661, 932, 954
BstV2I	GAAGAC	1 cut(s)	693
BstZI	CGGCCG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	816
BsuRI	GGCC	8 cut(s)	42, 84, 98, 246, 343, 366, 478, 761
BsuTUI	ATCGAT	1 cut(s)	816
BtgI	CCRYGG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	697, 738
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	40, 82, 368, 850
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	950
Cfr10I	RCCGGY	5 cut(s)	38, 80, 101, 848, 860
Cfr13I	GGNCC	8 cut(s)	83, 104, 170, 341, 365, 429, 476, 534
ClaI	ATCGAT	1 cut(s)	816
CseI	GACGC	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	5 cut(s)	187, 307, 656, 683, 824
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	506, 603, 611, 642
DpnI	GATC	5 cut(s)	137, 639, 674, 815, 819
DpnII	GATC	5 cut(s)	135, 637, 672, 813, 817
DraI	TTTAAA	1 cut(s)	463
DrdI	GACNNNNNNGTC	2 cut(s)	146, 541
DseDI	GACNNNNNNGTC	2 cut(s)	146, 541
EaeI	YGGCCR	2 cut(s)	96, 759
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	236, 888
EarI	CTCTTC	2 cut(s)	236, 888
EciI	GGCGGA	2 cut(s)	25, 148
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	925
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	935
Eco47I	GGWCC	4 cut(s)	104, 170, 429, 534
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	2 cut(s)	264, 788
EcoICRI	GAGCTC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	925
FaeI	CATG	5 cut(s)	190, 310, 659, 686, 827
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	186, 306, 655, 682, 823
FauI	CCCGC	2 cut(s)	75, 375
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	926, 964
GlaI	GCGC	1 cut(s)	949
HaeIII	GGCC	8 cut(s)	42, 84, 98, 246, 343, 366, 478, 761
HgaI	GACGC	1 cut(s)	532
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	5 cut(s)	190, 310, 659, 686, 827
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HinfI	GANTC	5 cut(s)	190, 286, 325, 542, 679
HphI	GGTGA	3 cut(s)	6, 12, 718
Hpy188I	TCNGA	3 cut(s)	330, 416, 433
Hpy188III	TCNNGA	9 cut(s)	194, 215, 488, 641, 676, 683, 790, 811, 906
Hpy99I	CGWCG	2 cut(s)	152, 839
HpyAV	CCTTC	4 cut(s)	53, 121, 236, 787
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4V	TGCA	3 cut(s)	454, 497, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 475, 523
HpyF3I	CTNAG	4 cut(s)	506, 603, 611, 642
Hsp92II	CATG	5 cut(s)	190, 310, 659, 686, 827
HspAI	GCGC	1 cut(s)	948
KroI	GCCGGC	3 cut(s)	38, 80, 848
KroNI	GCCGGC	3 cut(s)	40, 82, 850
Kzo9I	GATC	5 cut(s)	135, 637, 672, 813, 817
LmnI	GCTCC	5 cut(s)	121, 129, 502, 554, 595
Lsp1109I	GCAGC	6 cut(s)	214, 249, 468, 661, 932, 954
MaeI	CTAG	2 cut(s)	926, 964
MalI	GATC	5 cut(s)	137, 639, 674, 815, 819
MboI	GATC	5 cut(s)	135, 637, 672, 813, 817
MboII	GAAGA	9 cut(s)	3, 50, 223, 698, 721, 749, 775, 875, 878
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	769, 873, 901
MlyI	GAGTC	1 cut(s)	551
MroNI	GCCGGC	3 cut(s)	38, 80, 848
MseI	TTAA	2 cut(s)	462, 549
MspA1I	CMGCKG	3 cut(s)	322, 481, 945
MspR9I	CCNGG	3 cut(s)	119, 443, 776
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	243, 475, 523
NaeI	GCCGGC	3 cut(s)	40, 82, 850
NciI	CCSGG	2 cut(s)	119, 776
NdeII	GATC	5 cut(s)	135, 637, 672, 813, 817
NgoMIV	GCCGGC	3 cut(s)	38, 80, 848
NlaIII	CATG	5 cut(s)	190, 310, 659, 686, 827
NlaIV	GGNNCC	3 cut(s)	172, 535, 556
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	3 cut(s)	310, 659, 827
NspV	TTCGAA	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	788
PagI	TCATGA	1 cut(s)	682
PciI	ACATGT	2 cut(s)	655, 823
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 281
PdiI	GCCGGC	3 cut(s)	40, 82, 850
PfeI	GAWTC	4 cut(s)	190, 286, 325, 679
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	564
Ple19I	CGATCG	1 cut(s)	820
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PscI	ACATGT	2 cut(s)	655, 823
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	172, 535, 556
PspPI	GGNCC	8 cut(s)	83, 104, 170, 341, 365, 429, 476, 534
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	945
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	462, 549
Sau3AI	GATC	5 cut(s)	135, 637, 672, 813, 817
Sau96I	GGNCC	8 cut(s)	83, 104, 170, 341, 365, 429, 476, 534
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	119, 443, 776
SduI	GDGCHC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	180
SgrAI	CRCCGGYG	1 cut(s)	860
SinI	GGWCC	4 cut(s)	104, 170, 429, 534
SlaI	CTCGAG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	3 cut(s)	769, 873, 901
SspMI	CTAG	2 cut(s)	926, 964
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	117, 441, 774
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	9 cut(s)	114, 138, 150, 180, 545, 789, 816, 820, 837
TasI	AATT	3 cut(s)	769, 873, 901
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	6 cut(s)	101, 346, 449, 481, 764, 867
TfiI	GAWTC	4 cut(s)	190, 286, 325, 679
Tru1I	TTAA	2 cut(s)	462, 549
Tru9I	TTAA	2 cut(s)	462, 549
TscAI	CASTG	2 cut(s)	697, 738
TseI	GCWGC	6 cut(s)	202, 237, 481, 649, 942, 945
TspDTI	ATGAA	4 cut(s)	350, 671, 699, 728
TspGWI	ACGGA	2 cut(s)	148, 183
TspRI	CASTG	2 cut(s)	697, 738
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	564
VpaK11BI	GGWCC	4 cut(s)	104, 170, 429, 534
XagI	CCTNNNNNAGG	1 cut(s)	791
XceI	RCATGY	3 cut(s)	310, 659, 827
XhoI	CTCGAG	1 cut(s)	788
XmaJI	CCTAGG	1 cut(s)	925
XspI	CTAG	2 cut(s)	926, 964
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.