Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0023087

Physical Location & Seq

Genomic Coordinates Forward (+)

50639011 .. 50640270

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTCGCGAGAAGCAGCAGGATAATCCCGACTACGCTTTCCTCTTCGGCAGCGAAGGCCACGGCTACGCCTCCACTCGGGTTGTGTCGTTCAACCCGAATCCTCAATCCCCTCCCCACATGCTTTGTCCTCCGCTGAATCCGATGATGAATGGGCCGCCGAACCCGATGATGGGTGGCCCGCAGTCGTATTTCTACGACCAGCAGCGGCATAATCAACAGCCTTTCGGAGTTTATGGGAGGTCCGATTATGACCAGGCGGCGGCGCAACCCTTTAAAGGGCTTTCAGGGCCGCTGCCTCCTGATGTTGCAATGGATCTGAGCAATGTGCTTATGACGCTGAATGGGACCAAAGAGTCGATTAAAGGAGCCAAGTTTTGGTTTATGCAGAGGTCTATTTTCGCTCCGGCTCTGGCTGAGGCTCTTAGAGAGAGGGTGTTTGGACTTGATGATCCTGAGAGGCAGCTACATGTGATATTTCTTGCCAATGACATTTTCACATGCATGGCCAGTGGAGGAGCTTTGAGTGGCTCTGCACAAGCAGCTTTAGCGCTGACCAATTACCAAAATCTGCTCATGAGGCATAACTCGATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

199

Amino Acids

22.0

Weight (kDa)

6.18

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CID	PF04818	107 - 166	1.7e-08	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023087)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8060778.1_g000001 Rmu_sc0002541.1_g000032
rosa_rugosa	Rorug04G0446400
rosa_wichuraiana	Rw7G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	378
AccII	CGCG	1 cut(s)	9
AciI	CCGC	7 cut(s)	134, 158, 182, 208, 260, 263, 293
AclWI	GGATC	2 cut(s)	324, 446
AcoI	YGGCCR	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	552
AfiI	CCNNNNNNNGG	7 cut(s)	78, 172, 173, 262, 278, 279, 378
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	466, 521, 545
AluI	AGCT	3 cut(s)	466, 521, 545
AlwI	GGATC	2 cut(s)	324, 446
Ama87I	CYCGRG	1 cut(s)	78
Aor51HI	AGCGCT	1 cut(s)	552
AoxI	GGCC	5 cut(s)	58, 155, 178, 290, 507
ApeKI	GCWGC	6 cut(s)	16, 51, 205, 295, 463, 542
AspLEI	GCGC	2 cut(s)	268, 553
AspS9I	GGNCC	5 cut(s)	155, 179, 243, 290, 348
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	243, 348
BalI	TGGCCA	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	6 cut(s)	28, 63, 217, 282, 475, 554
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	243, 348
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	5 cut(s)	155, 179, 243, 290, 348
BmiI	GGNNCC	2 cut(s)	349, 370
BmrFI	CCNGG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 172, 173, 262, 278, 279, 378
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	318, 331
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	7 cut(s)	78, 172, 173, 262, 278, 279, 378
BseMI	GCAATG	2 cut(s)	318, 331
BseMII	CTCAG	3 cut(s)	311, 408, 447
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	6 cut(s)	28, 63, 217, 282, 475, 554
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	60, 157, 180, 292, 509
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	7 cut(s)	78, 172, 173, 262, 278, 279, 378
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	60, 157, 180, 292, 509
BsoBI	CYCGRG	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	316, 451
Bsp68I	TCGCGA	1 cut(s)	9
BspACI	CCGC	7 cut(s)	134, 158, 182, 208, 260, 263, 293
BspANI	GGCC	5 cut(s)	60, 157, 180, 292, 509
BspCNI	CTCAG	3 cut(s)	312, 409, 448
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	349, 370
BspPI	GGATC	2 cut(s)	324, 446
BsrDI	GCAATG	2 cut(s)	318, 331
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	316, 451
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	320, 417, 425, 456
BstDSI	CCRYGG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	2 cut(s)	268, 553
BstKTI	GATC	2 cut(s)	319, 454
BstMBI	GATC	2 cut(s)	316, 451
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 289, 337, 542, 548, 580
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	3 cut(s)	124, 473, 504
BstSCI	CCNGG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	6 cut(s)	28, 63, 217, 282, 475, 554
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	60, 157, 180, 292, 509
BtgI	CCRYGG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	517
BtuMI	TCGCGA	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	182
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	2 cut(s)	268, 553
Cfr13I	GGNCC	5 cut(s)	155, 179, 243, 290, 348
CseI	GACGC	1 cut(s)	346
CspCI	CAANNNNNGTGG	4 cut(s)	64, 99, 107, 142
CviAII	CATG	5 cut(s)	121, 470, 501, 505, 577
DdeI	CTNAG	4 cut(s)	320, 417, 425, 456
DpnI	GATC	2 cut(s)	318, 453
DpnII	GATC	2 cut(s)	316, 451
DraI	TTTAAA	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	243, 348
Eco47III	AGCGCT	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	506
FaeI	CATG	5 cut(s)	124, 473, 504, 508, 580
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	120, 469, 500, 504, 576
FauI	CCCGC	1 cut(s)	189
GlaI	GCGC	2 cut(s)	267, 552
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	5 cut(s)	60, 157, 180, 292, 509
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	2 cut(s)	268, 553
Hin1II	CATG	5 cut(s)	124, 473, 504, 508, 580
Hin6I	GCGC	2 cut(s)	266, 551
HinP1I	GCGC	2 cut(s)	266, 551
HinfI	GANTC	4 cut(s)	4, 100, 139, 356
HpaII	CCGG	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	144, 230, 247, 321
Hpy188III	TCNNGA	5 cut(s)	8, 29, 302, 455, 577
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	4 cut(s)	311, 388, 504, 536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 289, 337, 542, 548, 580
HpyF3I	CTNAG	4 cut(s)	320, 417, 425, 456
Hsp92II	CATG	5 cut(s)	124, 473, 504, 508, 580
HspAI	GCGC	2 cut(s)	266, 551
Kzo9I	GATC	2 cut(s)	316, 451
LmnI	GCTCC	3 cut(s)	368, 409, 518
Lsp1109I	GCAGC	6 cut(s)	28, 63, 217, 282, 475, 554
MalI	GATC	2 cut(s)	318, 453
MboI	GATC	2 cut(s)	316, 451
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	2 cut(s)	559, 595
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	365
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	2 cut(s)	276, 363
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	3 cut(s)	136, 208, 295
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	6 cut(s)	57, 289, 337, 542, 548, 580
NdeII	GATC	2 cut(s)	316, 451
NlaIII	CATG	5 cut(s)	124, 473, 504, 508, 580
NlaIV	GGNNCC	2 cut(s)	349, 370
NruI	TCGCGA	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	506
NspI	RCATGY	3 cut(s)	124, 473, 504
PagI	TCATGA	1 cut(s)	576
PciI	ACATGT	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	4, 100, 139
PflMI	CCANNNNNTGG	1 cut(s)	378
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PscI	ACATGT	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	349, 370
PspPI	GGNCC	5 cut(s)	155, 179, 243, 290, 348
PsuI	RGATCY	1 cut(s)	316
RruI	TCGCGA	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	276, 363
Sau3AI	GATC	2 cut(s)	316, 451
Sau96I	GGNCC	5 cut(s)	155, 179, 243, 290, 348
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	5 cut(s)	245, 395, 468, 523, 547
SinI	GGWCC	2 cut(s)	243, 348
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	559, 595
SsiI	CCGC	7 cut(s)	134, 158, 182, 208, 260, 263, 293
StyD4I	CCNGG	1 cut(s)	255
TaqI	TCGA	2 cut(s)	359, 590
TasI	AATT	2 cut(s)	559, 595
TauI	GCSGC	5 cut(s)	160, 211, 263, 266, 295
TfiI	GAWTC	3 cut(s)	4, 100, 139
Tru1I	TTAA	2 cut(s)	276, 363
Tru9I	TTAA	2 cut(s)	276, 363
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	6 cut(s)	16, 51, 205, 295, 463, 542
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	243, 348
XceI	RCATGY	3 cut(s)	124, 473, 504
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.