Rmu_co8128386.1_g000001

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8128386.1
OG0021640
Physical Location & Seq
Forward (+)
1 .. 399
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8128386.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
cttgaagttgtgaagacaaggagcttaccttggaaggactatgaaatggatgcaattcattctttgcagcttattctgaggaatgcattcaaggatgtgggaaccatggatgtaaacaacagtggaatccagatgaggcttagtgacttgaaagttgatggtatgcaagaactggaagcagtgacaggtgagatggtccggttgattgaaacagcaacagtgccaattttggcagttgatgttgatgggtcagttaatgggtggaacacaaaaatttccgagttaactggtcttcctgttgatgaagcaattggaaagaatttactcacacttgtggaagaatcttcaactagcatggtggaaaggatgctggagttggcattgcaaggtatgtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

132

Amino Acids

14.52

Weight (kDa)

4.42

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021640)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8128386.1_g000001 Rmu_sc0001102.1_g000013
rosa_samantha Rh3DG331400 Rh5CG202900 Rh7DG365900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 273, 319
AgsI TTSAA 5 cut(s) 5, 91, 151, 209, 348
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 2 cut(s) 24, 70
AluI AGCT 2 cut(s) 24, 70
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 2 cut(s) 273, 319
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 20, 284
BbvI GCAGC 1 cut(s) 79
BccI CCATC 3 cut(s) 152, 187, 239
BfaI CTAG 1 cut(s) 351
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 40, 357
BpiI GAAGAC 2 cut(s) 20, 284
BpmI CTGGAG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 29, 105
BsaWI WCCGGW 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 177, 292
Bse3DI GCAATG 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 29, 105
BseGI GGATG 4 cut(s) 55, 100, 115, 372
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 177, 292
BseXI GCAGC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 199
BsmI GAATGC 2 cut(s) 86, 88
Bsp19I CCATGG 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 2 cut(s) 177, 292
BssECI CCNNGG 2 cut(s) 29, 105
BssT1I CCWWGG 2 cut(s) 29, 105
Bst4CI ACNGT 2 cut(s) 122, 220
BstDEI CTNAG 2 cut(s) 77, 140
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 55, 100, 115, 372
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 2 cut(s) 20, 284
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 4 cut(s) 55, 100, 115, 372
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 3 cut(s) 127, 186, 225
CciI TCATGA 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 3 cut(s) 106, 355, 396
CviJI RGCY 3 cut(s) 24, 70, 139
CviKI_1 RGCY 3 cut(s) 24, 70, 139
DdeI CTNAG 2 cut(s) 77, 140
Eco130I CCWWGG 2 cut(s) 29, 105
Eco47I GGWCC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 29, 105
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 2 cut(s) 29, 105
FaeI CATG 3 cut(s) 109, 358, 399
FaiI YATR 6 cut(s) 42, 107, 164, 356, 392, 397
FatI CATG 3 cut(s) 105, 354, 395
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 4 cut(s) 62, 107, 122, 379
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 351
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 392
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 109, 358, 399
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 2 cut(s) 126, 341
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 115, 285
Hpy188I TCNGA 2 cut(s) 78, 280
Hpy188III TCNNGA 2 cut(s) 130, 396
Hpy8I GTNNAC 2 cut(s) 115, 285
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 122, 220
HpyCH4V TGCA 5 cut(s) 53, 67, 86, 166, 385
HpyF3I CTNAG 2 cut(s) 77, 140
Hsp92II CATG 3 cut(s) 109, 358, 399
KspAI GTTAAC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 7 cut(s) 143, 158, 171, 212, 273, 309, 356
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 40, 357
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 143, 181
MboII GAAGA 4 cut(s) 25, 284, 336, 350
MfeI CAATTG 1 cut(s) 309
MluCI AATT 5 cut(s) 54, 225, 273, 309, 319
MnlI CCTC 2 cut(s) 72, 129
Mph1103I ATGCAT 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 255, 284
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 2 cut(s) 86, 88
NcoI CCATGG 1 cut(s) 105
NlaIII CATG 3 cut(s) 109, 358, 399
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 143, 181
NsiI ATGCAT 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 332
PagI TCATGA 1 cut(s) 395
PctI GAATGC 2 cut(s) 86, 88
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 126, 341
PkrI GCNGC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 255, 284
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 196
SetI ASST 5 cut(s) 26, 31, 72, 190, 391
SfaNI GCATC 2 cut(s) 40, 357
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 5 cut(s) 54, 225, 273, 309, 319
SspMI CTAG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 29, 105
TaaI ACNGT 2 cut(s) 122, 220
TasI AATT 5 cut(s) 54, 225, 273, 309, 319
TfiI GAWTC 2 cut(s) 126, 341
Tru1I TTAA 2 cut(s) 255, 284
Tru9I TTAA 2 cut(s) 255, 284
TscAI CASTG 3 cut(s) 127, 186, 225
TseFI GTSAC 2 cut(s) 143, 181
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 2 cut(s) 143, 181
TspDTI ATGAA 3 cut(s) 47, 57, 318
TspRI CASTG 3 cut(s) 127, 186, 225
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 273, 319
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.