Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_co8128386.1_g000001 Rmu_sc0001102.1_g000013 |
| rosa_samantha | Rh3DG331400 Rh5CG202900 Rh7DG365900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1098 |
| AccB1I | GGYRCC | 1 cut(s) | 107 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1142 |
| AccII | CGCG | 1 cut(s) | 320 |
| AciI | CCGC | 2 cut(s) | 320, 1518 |
| AclWI | GGATC | 4 cut(s) | 405, 449, 1123, 1262 |
| AcsI | RAATTY | 3 cut(s) | 786, 832, 1154 |
| AcyI | GRCGYC | 1 cut(s) | 220 |
| AdeI | CACNNNGTG | 2 cut(s) | 273, 944 |
| AfaI | GTAC | 4 cut(s) | 301, 1110, 1385, 1612 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1142, 1577 |
| AgsI | TTSAA | 8 cut(s) | 67, 505, 518, 604, 664, 722, 861, 1088 |
| AjnI | CCWGG | 1 cut(s) | 328 |
| AleI | CACNNNNGTG | 1 cut(s) | 845 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 903, 935 |
| AluBI | AGCT | 9 cut(s) | 177, 309, 371, 537, 583, 1292, 1462, 1544, 1639 |
| AluI | AGCT | 9 cut(s) | 177, 309, 371, 537, 583, 1292, 1462, 1544, 1639 |
| AlwI | GGATC | 4 cut(s) | 405, 449, 1123, 1262 |
| AoxI | GGCC | 1 cut(s) | 1035 |
| ApeKI | GCWGC | 5 cut(s) | 177, 368, 422, 580, 1459 |
| ApoI | RAATTY | 3 cut(s) | 786, 832, 1154 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 182, 214, 1105, 1137 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 599, 1350 |
| AspS9I | GGNCC | 3 cut(s) | 709, 962, 1036 |
| AsuC2I | CCSGG | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 713, 1103 |
| AsuNHI | GCTAGC | 1 cut(s) | 1466 |
| AvaII | GGWCC | 2 cut(s) | 709, 962 |
| BanI | GGYRCC | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| BauI | CACGAG | 1 cut(s) | 1640 |
| BbsI | GAAGAC | 3 cut(s) | 533, 797, 1064 |
| BbvI | GCAGC | 5 cut(s) | 164, 380, 409, 592, 1471 |
| BccI | CCATC | 8 cut(s) | 122, 429, 467, 665, 700, 752, 974, 1060 |
| BciT130I | CCWGG | 1 cut(s) | 330 |
| BcnI | CCSGG | 1 cut(s) | 224 |
| BfaI | CTAG | 4 cut(s) | 77, 864, 948, 1467 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BisI | GCNGC | 5 cut(s) | 178, 369, 423, 581, 1460 |
| BlsI | GCNGC | 5 cut(s) | 179, 370, 424, 582, 1461 |
| Bme1390I | CCNGG | 2 cut(s) | 224, 330 |
| Bme18I | GGWCC | 2 cut(s) | 709, 962 |
| BmgT120I | GGNCC | 3 cut(s) | 709, 962, 1036 |
| BmiI | GGNNCC | 7 cut(s) | 29, 109, 326, 407, 616, 964, 1353 |
| BmrFI | CCNGG | 2 cut(s) | 224, 330 |
| BmrI | ACTGGG | 2 cut(s) | 1209, 1651 |
| BmsI | GCATC | 2 cut(s) | 553, 870 |
| BmtI | GCTAGC | 1 cut(s) | 1470 |
| BmuI | ACTGGG | 2 cut(s) | 1209, 1651 |
| BoxI | GACNNNNGTC | 1 cut(s) | 960 |
| BpiI | GAAGAC | 3 cut(s) | 533, 797, 1064 |
| BpmI | CTGGAG | 1 cut(s) | 905 |
| BpuEI | CTTGAG | 1 cut(s) | 1262 |
| BpuMI | CCSGG | 1 cut(s) | 224 |
| BsaHI | GRCGYC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 5 cut(s) | 328, 329, 387, 542, 618 |
| BsaWI | WCCGGW | 1 cut(s) | 711 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1142, 1577 |
| Bse1I | ACTGG | 7 cut(s) | 690, 805, 1054, 1204, 1336, 1657, 1663 |
| Bse3DI | GCAATG | 2 cut(s) | 893, 1191 |
| BseBI | CCWGG | 1 cut(s) | 330 |
| BseDI | CCNNGG | 5 cut(s) | 328, 329, 387, 542, 618 |
| BseGI | GGATG | 6 cut(s) | 170, 568, 613, 628, 885, 918 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1142, 1577 |
| BseMI | GCAATG | 2 cut(s) | 893, 1191 |
| BseMII | CTCAG | 4 cut(s) | 261, 581, 1161, 1605 |
| BseNI | ACTGG | 7 cut(s) | 690, 805, 1054, 1204, 1336, 1657, 1663 |
| BseRI | GAGGAG | 1 cut(s) | 1229 |
| BseXI | GCAGC | 5 cut(s) | 164, 380, 409, 592, 1471 |
| BsgI | GTGCAG | 1 cut(s) | 1452 |
| Bsh1236I | CGCG | 1 cut(s) | 320 |
| BshFI | GGCC | 1 cut(s) | 1037 |
| BshNI | GGYRCC | 1 cut(s) | 107 |
| BsiSI | CCGG | 2 cut(s) | 224, 712 |
| BslFI | GGGAC | 1 cut(s) | 948 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1142, 1577 |
| BsmFI | GGGAC | 1 cut(s) | 948 |
| BsmI | GAATGC | 3 cut(s) | 599, 601, 988 |
| BsnI | GGCC | 1 cut(s) | 1037 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp1407I | TGTACA | 1 cut(s) | 1108 |
| Bsp143I | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| Bsp19I | CCATGG | 1 cut(s) | 618 |
| BspACI | CCGC | 2 cut(s) | 320, 1518 |
| BspANI | GGCC | 1 cut(s) | 1037 |
| BspCNI | CTCAG | 4 cut(s) | 262, 582, 1162, 1606 |
| BspFNI | CGCG | 1 cut(s) | 320 |
| BspHI | TCATGA | 1 cut(s) | 1006 |
| BspLI | GGNNCC | 7 cut(s) | 29, 109, 326, 407, 616, 964, 1353 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspOI | GCTAGC | 1 cut(s) | 1470 |
| BspPI | GGATC | 4 cut(s) | 405, 449, 1123, 1262 |
| BspT107I | GGYRCC | 1 cut(s) | 107 |
| BsrDI | GCAATG | 2 cut(s) | 893, 1191 |
| BsrGI | TGTACA | 1 cut(s) | 1108 |
| BsrI | ACTGG | 7 cut(s) | 690, 805, 1054, 1204, 1336, 1657, 1663 |
| BssECI | CCNNGG | 5 cut(s) | 328, 329, 387, 542, 618 |
| BssMI | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| BssNI | GRCGYC | 1 cut(s) | 220 |
| BssSI | CACGAG | 1 cut(s) | 1640 |
| BssT1I | CCWWGG | 3 cut(s) | 387, 542, 618 |
| Bst2BI | CACGAG | 1 cut(s) | 1640 |
| Bst2UI | CCWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 7 cut(s) | 10, 206, 635, 733, 944, 1063, 1424 |
| Bst6I | CTCTTC | 2 cut(s) | 62, 1520 |
| BstACI | GRCGYC | 1 cut(s) | 220 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 114 |
| BstAUI | TGTACA | 1 cut(s) | 1108 |
| BstC8I | GCNNGC | 2 cut(s) | 1464, 1468 |
| BstDEI | CTNAG | 6 cut(s) | 270, 590, 653, 1170, 1191, 1614 |
| BstDSI | CCRYGG | 1 cut(s) | 618 |
| BstF5I | GGATG | 6 cut(s) | 170, 568, 613, 628, 885, 918 |
| BstFNI | CGCG | 1 cut(s) | 320 |
| BstKTI | GATC | 7 cut(s) | 413, 457, 497, 1131, 1257, 1563, 1605 |
| BstMBI | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 114 |
| BstNI | CCWGG | 1 cut(s) | 330 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 960 |
| BstSCI | CCNGG | 2 cut(s) | 222, 328 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstUI | CGCG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 5 cut(s) | 164, 380, 409, 592, 1471 |
| BstV2I | GAAGAC | 3 cut(s) | 533, 797, 1064 |
| BsuRI | GGCC | 1 cut(s) | 1037 |
| BtgI | CCRYGG | 1 cut(s) | 618 |
| BtsCI | GGATG | 6 cut(s) | 170, 568, 613, 628, 885, 918 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 9 cut(s) | 267, 417, 640, 738, 1047, 1146, 1386, 1429, 1664 |
| Cac8I | GCNNGC | 2 cut(s) | 1464, 1468 |
| CciI | TCATGA | 1 cut(s) | 1006 |
| Cfr13I | GGNCC | 3 cut(s) | 709, 962, 1036 |
| CseI | GACGC | 2 cut(s) | 228, 326 |
| Csp6I | GTAC | 4 cut(s) | 300, 1109, 1384, 1611 |
| CviAII | CATG | 7 cut(s) | 452, 619, 868, 1007, 1261, 1327, 1493 |
| CviQI | GTAC | 4 cut(s) | 300, 1109, 1384, 1611 |
| DdeI | CTNAG | 6 cut(s) | 270, 590, 653, 1170, 1191, 1614 |
| DpnI | GATC | 7 cut(s) | 412, 456, 496, 1130, 1256, 1562, 1604 |
| DpnII | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| DraIII | CACNNNGTG | 2 cut(s) | 273, 944 |
| Eam1104I | CTCTTC | 2 cut(s) | 62, 1520 |
| EarI | CTCTTC | 2 cut(s) | 62, 1520 |
| Eco130I | CCWWGG | 3 cut(s) | 387, 542, 618 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco32I | GATATC | 1 cut(s) | 1045 |
| Eco47I | GGWCC | 2 cut(s) | 709, 962 |
| EcoRII | CCWGG | 1 cut(s) | 328 |
| EcoRV | GATATC | 1 cut(s) | 1045 |
| EcoT14I | CCWWGG | 3 cut(s) | 387, 542, 618 |
| EcoT22I | ATGCAT | 1 cut(s) | 601 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| ErhI | CCWWGG | 3 cut(s) | 387, 542, 618 |
| FaeI | CATG | 7 cut(s) | 455, 622, 871, 1010, 1264, 1330, 1496 |
| FaqI | GGGAC | 1 cut(s) | 948 |
| FatI | CATG | 7 cut(s) | 451, 618, 867, 1006, 1260, 1326, 1492 |
| FauI | CCCGC | 1 cut(s) | 313 |
| FauNDI | CATATG | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 5 cut(s) | 178, 369, 423, 581, 1460 |
| FokI | GGATG | 6 cut(s) | 157, 575, 620, 635, 892, 905 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| Fsp4HI | GCNGC | 5 cut(s) | 178, 369, 423, 581, 1460 |
| FspBI | CTAG | 4 cut(s) | 77, 864, 948, 1467 |
| GluI | GCNGC | 5 cut(s) | 178, 369, 423, 581, 1460 |
| GsuI | CTGGAG | 1 cut(s) | 905 |
| HaeIII | GGCC | 1 cut(s) | 1037 |
| HapII | CCGG | 2 cut(s) | 224, 712 |
| HgaI | GACGC | 2 cut(s) | 228, 326 |
| Hin1I | GRCGYC | 1 cut(s) | 220 |
| Hin1II | CATG | 7 cut(s) | 455, 622, 871, 1010, 1264, 1330, 1496 |
| HincII | GTYRAC | 2 cut(s) | 798, 1197 |
| HindII | GTYRAC | 2 cut(s) | 798, 1197 |
| HindIII | AAGCTT | 1 cut(s) | 1290 |
| HinfI | GANTC | 8 cut(s) | 95, 284, 639, 854, 1177, 1282, 1369, 1567 |
| HpaI | GTTAAC | 2 cut(s) | 798, 1197 |
| HpaII | CCGG | 2 cut(s) | 224, 712 |
| HphI | GGTGA | 3 cut(s) | 359, 713, 1103 |
| Hpy166II | GTNNAC | 5 cut(s) | 628, 798, 1077, 1197, 1386 |
| Hpy8I | GTNNAC | 5 cut(s) | 628, 798, 1077, 1197, 1386 |
| HpyAV | CCTTC | 3 cut(s) | 460, 541, 1082 |
| HpyCH4III | ACNGT | 7 cut(s) | 10, 206, 635, 733, 944, 1063, 1424 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 114 |
| HpyF3I | CTNAG | 6 cut(s) | 270, 590, 653, 1170, 1191, 1614 |
| Hsp92I | GRCGYC | 1 cut(s) | 220 |
| Hsp92II | CATG | 7 cut(s) | 455, 622, 871, 1010, 1264, 1330, 1496 |
| KspAI | GTTAAC | 2 cut(s) | 798, 1197 |
| Kzo9I | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| LmnI | GCTCC | 2 cut(s) | 534, 1622 |
| Lsp1109I | GCAGC | 5 cut(s) | 164, 380, 409, 592, 1471 |
| LweI | GCATC | 2 cut(s) | 553, 870 |
| MaeI | CTAG | 4 cut(s) | 77, 864, 948, 1467 |
| MaeIII | GTNAC | 3 cut(s) | 656, 694, 1435 |
| MalI | GATC | 7 cut(s) | 412, 456, 496, 1130, 1256, 1562, 1604 |
| MboI | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| MfeI | CAATTG | 2 cut(s) | 822, 1104 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 3 cut(s) | 116, 1357, 1522 |
| MnlI | CCTC | 9 cut(s) | 585, 642, 901, 1207, 1210, 1237, 1284, 1420, 1600 |
| Mph1103I | ATGCAT | 1 cut(s) | 601 |
| MroXI | GAANNNNTTC | 2 cut(s) | 599, 1350 |
| MseI | TTAA | 5 cut(s) | 768, 797, 1196, 1532, 1551 |
| MslI | CAYNNNNRTG | 2 cut(s) | 845, 1650 |
| MspA1I | CMGCKG | 2 cut(s) | 177, 371 |
| MspI | CCGG | 2 cut(s) | 224, 712 |
| MspR9I | CCNGG | 2 cut(s) | 224, 330 |
| MunI | CAATTG | 2 cut(s) | 822, 1104 |
| Mva1269I | GAATGC | 3 cut(s) | 599, 601, 988 |
| MvaI | CCWGG | 1 cut(s) | 330 |
| MvnI | CGCG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 114 |
| NciI | CCSGG | 1 cut(s) | 224 |
| NcoI | CCATGG | 1 cut(s) | 618 |
| NdeI | CATATG | 1 cut(s) | 279 |
| NdeII | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| NheI | GCTAGC | 1 cut(s) | 1466 |
| NlaIII | CATG | 7 cut(s) | 455, 622, 871, 1010, 1264, 1330, 1496 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 109, 326, 407, 616, 964, 1353 |
| NmuCI | GTSAC | 2 cut(s) | 656, 1435 |
| NsiI | ATGCAT | 1 cut(s) | 601 |
| OliI | CACNNNNGTG | 1 cut(s) | 845 |
| PagI | TCATGA | 1 cut(s) | 1006 |
| PasI | CCCWGGG | 1 cut(s) | 329 |
| PctI | GAATGC | 3 cut(s) | 599, 601, 988 |
| PdmI | GAANNNNTTC | 2 cut(s) | 599, 1350 |
| PfeI | GAWTC | 7 cut(s) | 284, 639, 854, 1177, 1282, 1369, 1567 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1142 |
| PkrI | GCNGC | 5 cut(s) | 179, 370, 424, 582, 1461 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| PshAI | GACNNNNGTC | 1 cut(s) | 960 |
| PsiI | TTATAA | 1 cut(s) | 1098 |
| Psp6I | CCWGG | 1 cut(s) | 328 |
| PspGI | CCWGG | 1 cut(s) | 328 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 109, 326, 407, 616, 964, 1353 |
| PspPI | GGNCC | 3 cut(s) | 709, 962, 1036 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PvuII | CAGCTG | 2 cut(s) | 177, 371 |
| RsaI | GTAC | 4 cut(s) | 301, 1110, 1385, 1612 |
| RsaNI | GTAC | 4 cut(s) | 300, 1109, 1384, 1611 |
| RseI | CAYNNNNRTG | 2 cut(s) | 845, 1650 |
| SaqAI | TTAA | 5 cut(s) | 768, 797, 1196, 1532, 1551 |
| SatI | GCNGC | 5 cut(s) | 178, 369, 423, 581, 1460 |
| Sau3AI | GATC | 7 cut(s) | 410, 454, 494, 1128, 1254, 1560, 1602 |
| Sau96I | GGNCC | 3 cut(s) | 709, 962, 1036 |
| SchI | GAGTC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 2 cut(s) | 224, 330 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SfaNI | GCATC | 2 cut(s) | 553, 870 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SinI | GGWCC | 2 cut(s) | 709, 962 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 845, 1650 |
| SmlI | CTYRAG | 1 cut(s) | 1277 |
| SmoI | CTYRAG | 1 cut(s) | 1277 |
| SsiI | CCGC | 2 cut(s) | 320, 1518 |
| SspI | AATATT | 1 cut(s) | 1140 |
| SspMI | CTAG | 4 cut(s) | 77, 864, 948, 1467 |
| StyD4I | CCNGG | 2 cut(s) | 222, 328 |
| StyI | CCWWGG | 3 cut(s) | 387, 542, 618 |
| TaaI | ACNGT | 7 cut(s) | 10, 206, 635, 733, 944, 1063, 1424 |
| TaqI | TCGA | 4 cut(s) | 201, 927, 1372, 1605 |
| TatI | WGTACW | 3 cut(s) | 299, 1108, 1383 |
| TfiI | GAWTC | 7 cut(s) | 284, 639, 854, 1177, 1282, 1369, 1567 |
| Tru1I | TTAA | 5 cut(s) | 768, 797, 1196, 1532, 1551 |
| Tru9I | TTAA | 5 cut(s) | 768, 797, 1196, 1532, 1551 |
| TscAI | CASTG | 9 cut(s) | 274, 424, 640, 738, 1054, 1153, 1393, 1429, 1664 |
| TseFI | GTSAC | 2 cut(s) | 656, 1435 |
| TseI | GCWGC | 5 cut(s) | 177, 368, 422, 580, 1459 |
| Tsp45I | GTSAC | 2 cut(s) | 656, 1435 |
| TspDTI | ATGAA | 8 cut(s) | 560, 570, 831, 995, 1023, 1167, 1481, 1538 |
| TspRI | CASTG | 9 cut(s) | 274, 424, 640, 738, 1054, 1153, 1393, 1429, 1664 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1142 |
| VpaK11BI | GGWCC | 2 cut(s) | 709, 962 |
| XapI | RAATTY | 3 cut(s) | 786, 832, 1154 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1046 |
| XmnI | GAANNNNTTC | 2 cut(s) | 599, 1350 |
| XspI | CTAG | 4 cut(s) | 77, 864, 948, 1467 |
| Zsp2I | ATGCAT | 1 cut(s) | 601 |