Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_co8128386.1_g000001 Rmu_sc0001102.1_g000013 |
| rosa_samantha | Rh3DG331400 Rh5CG202900 Rh7DG365900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 888 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 932 |
| AccII | CGCG | 1 cut(s) | 110 |
| AccIII | TCCGGA | 1 cut(s) | 247 |
| AciI | CCGC | 2 cut(s) | 110, 1596 |
| AclWI | GGATC | 4 cut(s) | 195, 239, 913, 1052 |
| AcsI | RAATTY | 4 cut(s) | 576, 622, 944, 1647 |
| AcuI | CTGAAG | 1 cut(s) | 1604 |
| AdeI | CACNNNGTG | 2 cut(s) | 63, 734 |
| AfaI | GTAC | 5 cut(s) | 91, 900, 1175, 1402, 1533 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 932, 1367 |
| AgsI | TTSAA | 8 cut(s) | 295, 308, 394, 454, 512, 651, 878, 1561 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AleI | CACNNNNGTG | 1 cut(s) | 635 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 693, 725 |
| AlwI | GGATC | 4 cut(s) | 195, 239, 913, 1052 |
| Aor13HI | TCCGGA | 1 cut(s) | 247 |
| AoxI | GGCC | 2 cut(s) | 825, 1623 |
| ApeKI | GCWGC | 5 cut(s) | 158, 370, 1249, 1456, 1459 |
| ApoI | RAATTY | 4 cut(s) | 576, 622, 944, 1647 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 895, 927 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 389, 1140 |
| AspS9I | GGNCC | 4 cut(s) | 499, 752, 826, 1624 |
| AsuHPI | GGTGA | 3 cut(s) | 149, 503, 893 |
| AsuNHI | GCTAGC | 1 cut(s) | 1256 |
| AvaII | GGWCC | 2 cut(s) | 499, 752 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BauI | CACGAG | 1 cut(s) | 1430 |
| BbsI | GAAGAC | 3 cut(s) | 323, 587, 854 |
| BbvI | GCAGC | 5 cut(s) | 170, 382, 1261, 1468, 1471 |
| BccI | CCATC | 8 cut(s) | 219, 257, 455, 490, 542, 764, 850, 1499 |
| BceAI | ACGGC | 1 cut(s) | 1514 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BfaI | CTAG | 3 cut(s) | 654, 738, 1257 |
| BisI | GCNGC | 5 cut(s) | 159, 371, 1250, 1457, 1460 |
| BlpI | GCTNAGC | 1 cut(s) | 1463 |
| BlsI | GCNGC | 5 cut(s) | 160, 372, 1251, 1458, 1461 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 499, 752 |
| BmgT120I | GGNCC | 4 cut(s) | 499, 752, 826, 1624 |
| BmiI | GGNNCC | 5 cut(s) | 116, 197, 406, 754, 1143 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmrI | ACTGGG | 1 cut(s) | 999 |
| BmsI | GCATC | 3 cut(s) | 343, 660, 1506 |
| BmtI | GCTAGC | 1 cut(s) | 1260 |
| BmuI | ACTGGG | 1 cut(s) | 999 |
| BoxI | GACNNNNGTC | 1 cut(s) | 750 |
| BpiI | GAAGAC | 3 cut(s) | 323, 587, 854 |
| BpmI | CTGGAG | 1 cut(s) | 695 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1463 |
| BpuEI | CTTGAG | 1 cut(s) | 1052 |
| BsaJI | CCNNGG | 4 cut(s) | 118, 119, 177, 332 |
| BsaWI | WCCGGW | 2 cut(s) | 247, 501 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 932, 1367 |
| Bse1I | ACTGG | 7 cut(s) | 480, 595, 844, 994, 1126, 1440, 1447 |
| Bse3DI | GCAATG | 2 cut(s) | 683, 981 |
| BseAI | TCCGGA | 1 cut(s) | 247 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 4 cut(s) | 118, 119, 177, 332 |
| BseGI | GGATG | 5 cut(s) | 256, 358, 403, 675, 708 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 932, 1367 |
| BseMI | GCAATG | 2 cut(s) | 683, 981 |
| BseMII | CTCAG | 6 cut(s) | 51, 371, 951, 1395, 1397, 1477 |
| BseNI | ACTGG | 7 cut(s) | 480, 595, 844, 994, 1126, 1440, 1447 |
| BseRI | GAGGAG | 1 cut(s) | 1019 |
| BseXI | GCAGC | 5 cut(s) | 170, 382, 1261, 1468, 1471 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1236I | CGCG | 1 cut(s) | 110 |
| BshFI | GGCC | 2 cut(s) | 827, 1625 |
| BsiSI | CCGG | 2 cut(s) | 248, 502 |
| BslFI | GGGAC | 1 cut(s) | 738 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 932, 1367 |
| BsmFI | GGGAC | 1 cut(s) | 738 |
| BsmI | GAATGC | 3 cut(s) | 389, 391, 778 |
| BsnI | GGCC | 2 cut(s) | 827, 1625 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp13I | TCCGGA | 1 cut(s) | 247 |
| Bsp1407I | TGTACA | 1 cut(s) | 898 |
| Bsp143I | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1463 |
| BspACI | CCGC | 2 cut(s) | 110, 1596 |
| BspANI | GGCC | 2 cut(s) | 827, 1625 |
| BspCNI | CTCAG | 6 cut(s) | 52, 372, 952, 1396, 1396, 1476 |
| BspEI | TCCGGA | 1 cut(s) | 247 |
| BspFNI | CGCG | 1 cut(s) | 110 |
| BspHI | TCATGA | 1 cut(s) | 796 |
| BspLI | GGNNCC | 5 cut(s) | 116, 197, 406, 754, 1143 |
| BspOI | GCTAGC | 1 cut(s) | 1260 |
| BspPI | GGATC | 4 cut(s) | 195, 239, 913, 1052 |
| BsrDI | GCAATG | 2 cut(s) | 683, 981 |
| BsrGI | TGTACA | 1 cut(s) | 898 |
| BsrI | ACTGG | 7 cut(s) | 480, 595, 844, 994, 1126, 1440, 1447 |
| BssECI | CCNNGG | 4 cut(s) | 118, 119, 177, 332 |
| BssMI | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| BssSI | CACGAG | 1 cut(s) | 1430 |
| BssT1I | CCWWGG | 2 cut(s) | 177, 332 |
| Bst2BI | CACGAG | 1 cut(s) | 1430 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 7 cut(s) | 211, 425, 523, 734, 853, 1214, 1309 |
| Bst6I | CTCTTC | 1 cut(s) | 1310 |
| BstAUI | TGTACA | 1 cut(s) | 898 |
| BstC8I | GCNNGC | 4 cut(s) | 1254, 1258, 1454, 1596 |
| BstDEI | CTNAG | 8 cut(s) | 60, 380, 443, 960, 981, 1383, 1404, 1463 |
| BstF5I | GGATG | 5 cut(s) | 256, 358, 403, 675, 708 |
| BstFNI | CGCG | 1 cut(s) | 110 |
| BstKTI | GATC | 9 cut(s) | 25, 203, 247, 287, 921, 1047, 1353, 1395, 1489 |
| BstMBI | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1519, 1600, 1622 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 750 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstUI | CGCG | 1 cut(s) | 110 |
| BstV1I | GCAGC | 5 cut(s) | 170, 382, 1261, 1468, 1471 |
| BstV2I | GAAGAC | 3 cut(s) | 323, 587, 854 |
| BsuRI | GGCC | 2 cut(s) | 827, 1625 |
| BtsCI | GGATG | 5 cut(s) | 256, 358, 403, 675, 708 |
| Cac8I | GCNNGC | 4 cut(s) | 1254, 1258, 1454, 1596 |
| CciI | TCATGA | 1 cut(s) | 796 |
| Cfr13I | GGNCC | 4 cut(s) | 499, 752, 826, 1624 |
| CseI | GACGC | 1 cut(s) | 116 |
| Csp6I | GTAC | 5 cut(s) | 90, 899, 1174, 1401, 1532 |
| CviAII | CATG | 6 cut(s) | 242, 658, 797, 1051, 1117, 1283 |
| CviQI | GTAC | 5 cut(s) | 90, 899, 1174, 1401, 1532 |
| DdeI | CTNAG | 8 cut(s) | 60, 380, 443, 960, 981, 1383, 1404, 1463 |
| DpnI | GATC | 9 cut(s) | 24, 202, 246, 286, 920, 1046, 1352, 1394, 1488 |
| DpnII | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| DraIII | CACNNNGTG | 2 cut(s) | 63, 734 |
| Eam1104I | CTCTTC | 1 cut(s) | 1310 |
| EarI | CTCTTC | 1 cut(s) | 1310 |
| Eco130I | CCWWGG | 2 cut(s) | 177, 332 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco32I | GATATC | 3 cut(s) | 35, 220, 835 |
| Eco47I | GGWCC | 2 cut(s) | 499, 752 |
| Eco57I | CTGAAG | 1 cut(s) | 1604 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoRV | GATATC | 3 cut(s) | 35, 220, 835 |
| EcoT14I | CCWWGG | 2 cut(s) | 177, 332 |
| EcoT22I | ATGCAT | 1 cut(s) | 391 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 2 cut(s) | 177, 332 |
| FaeI | CATG | 6 cut(s) | 245, 661, 800, 1054, 1120, 1286 |
| FaqI | GGGAC | 1 cut(s) | 738 |
| FatI | CATG | 6 cut(s) | 241, 657, 796, 1050, 1116, 1282 |
| FauI | CCCGC | 2 cut(s) | 103, 1603 |
| FauNDI | CATATG | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 5 cut(s) | 159, 371, 1250, 1457, 1460 |
| FokI | GGATG | 5 cut(s) | 263, 365, 410, 682, 695 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 5 cut(s) | 159, 371, 1250, 1457, 1460 |
| FspBI | CTAG | 3 cut(s) | 654, 738, 1257 |
| GluI | GCNGC | 5 cut(s) | 159, 371, 1250, 1457, 1460 |
| GsuI | CTGGAG | 1 cut(s) | 695 |
| HaeIII | GGCC | 2 cut(s) | 827, 1625 |
| HapII | CCGG | 2 cut(s) | 248, 502 |
| HgaI | GACGC | 1 cut(s) | 116 |
| Hin1II | CATG | 6 cut(s) | 245, 661, 800, 1054, 1120, 1286 |
| HincII | GTYRAC | 2 cut(s) | 588, 987 |
| HindII | GTYRAC | 2 cut(s) | 588, 987 |
| HindIII | AAGCTT | 1 cut(s) | 1080 |
| HinfI | GANTC | 8 cut(s) | 74, 429, 644, 967, 1072, 1159, 1357, 1481 |
| HpaI | GTTAAC | 2 cut(s) | 588, 987 |
| HpaII | CCGG | 2 cut(s) | 248, 502 |
| HphI | GGTGA | 3 cut(s) | 149, 503, 893 |
| Hpy166II | GTNNAC | 5 cut(s) | 418, 588, 867, 987, 1176 |
| Hpy8I | GTNNAC | 5 cut(s) | 418, 588, 867, 987, 1176 |
| HpyAV | CCTTC | 2 cut(s) | 331, 872 |
| HpyCH4III | ACNGT | 7 cut(s) | 211, 425, 523, 734, 853, 1214, 1309 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1519, 1600, 1622 |
| HpyF3I | CTNAG | 8 cut(s) | 60, 380, 443, 960, 981, 1383, 1404, 1463 |
| Hsp92II | CATG | 6 cut(s) | 245, 661, 800, 1054, 1120, 1286 |
| Kpn2I | TCCGGA | 1 cut(s) | 247 |
| KspAI | GTTAAC | 2 cut(s) | 588, 987 |
| Kzo9I | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| LmnI | GCTCC | 2 cut(s) | 324, 1412 |
| Lsp1109I | GCAGC | 5 cut(s) | 170, 382, 1261, 1468, 1471 |
| LweI | GCATC | 3 cut(s) | 343, 660, 1506 |
| MaeI | CTAG | 3 cut(s) | 654, 738, 1257 |
| MaeIII | GTNAC | 1 cut(s) | 446 |
| MalI | GATC | 9 cut(s) | 24, 202, 246, 286, 920, 1046, 1352, 1394, 1488 |
| MboI | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| MboII | GAAGA | 9 cut(s) | 178, 268, 328, 587, 639, 653, 859, 1327, 1597 |
| MfeI | CAATTG | 2 cut(s) | 612, 894 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MlyI | GAGTC | 1 cut(s) | 1475 |
| MmeI | TCCRAC | 2 cut(s) | 1147, 1312 |
| Mph1103I | ATGCAT | 1 cut(s) | 391 |
| MroI | TCCGGA | 1 cut(s) | 247 |
| MroXI | GAANNNNTTC | 2 cut(s) | 389, 1140 |
| MseI | TTAA | 6 cut(s) | 558, 587, 986, 1322, 1341, 1651 |
| MslI | CAYNNNNRTG | 2 cut(s) | 635, 1440 |
| MspA1I | CMGCKG | 1 cut(s) | 161 |
| MspI | CCGG | 2 cut(s) | 248, 502 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MunI | CAATTG | 2 cut(s) | 612, 894 |
| Mva1269I | GAATGC | 3 cut(s) | 389, 391, 778 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MvnI | CGCG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1519, 1600, 1622 |
| NdeI | CATATG | 1 cut(s) | 69 |
| NdeII | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| NheI | GCTAGC | 1 cut(s) | 1256 |
| NlaIII | CATG | 6 cut(s) | 245, 661, 800, 1054, 1120, 1286 |
| NlaIV | GGNNCC | 5 cut(s) | 116, 197, 406, 754, 1143 |
| NmuCI | GTSAC | 1 cut(s) | 446 |
| NsiI | ATGCAT | 1 cut(s) | 391 |
| OliI | CACNNNNGTG | 1 cut(s) | 635 |
| PagI | TCATGA | 1 cut(s) | 796 |
| PasI | CCCWGGG | 1 cut(s) | 119 |
| PctI | GAATGC | 3 cut(s) | 389, 391, 778 |
| PdmI | GAANNNNTTC | 2 cut(s) | 389, 1140 |
| PfeI | GAWTC | 7 cut(s) | 74, 429, 644, 967, 1072, 1159, 1357 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 932 |
| PkrI | GCNGC | 5 cut(s) | 160, 372, 1251, 1458, 1461 |
| PleI | GAGTC | 1 cut(s) | 1475 |
| PpsI | GAGTC | 1 cut(s) | 1475 |
| PshAI | GACNNNNGTC | 1 cut(s) | 750 |
| PsiI | TTATAA | 1 cut(s) | 888 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 5 cut(s) | 116, 197, 406, 754, 1143 |
| PspPI | GGNCC | 4 cut(s) | 499, 752, 826, 1624 |
| PvuII | CAGCTG | 1 cut(s) | 161 |
| RsaI | GTAC | 5 cut(s) | 91, 900, 1175, 1402, 1533 |
| RsaNI | GTAC | 5 cut(s) | 90, 899, 1174, 1401, 1532 |
| RseI | CAYNNNNRTG | 2 cut(s) | 635, 1440 |
| SaqAI | TTAA | 6 cut(s) | 558, 587, 986, 1322, 1341, 1651 |
| SatI | GCNGC | 5 cut(s) | 159, 371, 1250, 1457, 1460 |
| Sau3AI | GATC | 9 cut(s) | 22, 200, 244, 284, 918, 1044, 1350, 1392, 1486 |
| Sau96I | GGNCC | 4 cut(s) | 499, 752, 826, 1624 |
| SchI | GAGTC | 1 cut(s) | 1475 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SfaNI | GCATC | 3 cut(s) | 343, 660, 1506 |
| SinI | GGWCC | 2 cut(s) | 499, 752 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 635, 1440 |
| SmlI | CTYRAG | 1 cut(s) | 1067 |
| SmoI | CTYRAG | 1 cut(s) | 1067 |
| SsiI | CCGC | 2 cut(s) | 110, 1596 |
| SspI | AATATT | 1 cut(s) | 930 |
| SspMI | CTAG | 3 cut(s) | 654, 738, 1257 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 2 cut(s) | 177, 332 |
| TaaI | ACNGT | 7 cut(s) | 211, 425, 523, 734, 853, 1214, 1309 |
| TaqI | TCGA | 4 cut(s) | 717, 1162, 1395, 1541 |
| TatI | WGTACW | 3 cut(s) | 89, 898, 1173 |
| TfiI | GAWTC | 7 cut(s) | 74, 429, 644, 967, 1072, 1159, 1357 |
| Tru1I | TTAA | 6 cut(s) | 558, 587, 986, 1322, 1341, 1651 |
| Tru9I | TTAA | 6 cut(s) | 558, 587, 986, 1322, 1341, 1651 |
| TseFI | GTSAC | 1 cut(s) | 446 |
| TseI | GCWGC | 5 cut(s) | 158, 370, 1249, 1456, 1459 |
| Tsp45I | GTSAC | 1 cut(s) | 446 |
| TspDTI | ATGAA | 9 cut(s) | 17, 350, 360, 621, 785, 813, 957, 1271, 1328 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 932 |
| VpaK11BI | GGWCC | 2 cut(s) | 499, 752 |
| XapI | RAATTY | 4 cut(s) | 576, 622, 944, 1647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 836 |
| XmnI | GAANNNNTTC | 2 cut(s) | 389, 1140 |
| XspI | CTAG | 3 cut(s) | 654, 738, 1257 |
| Zsp2I | ATGCAT | 1 cut(s) | 391 |