Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_co8128386.1_g000001 Rmu_sc0001102.1_g000013 |
| rosa_samantha | Rh3DG331400 Rh5CG202900 Rh7DG365900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 894 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 938 |
| AccII | CGCG | 1 cut(s) | 116 |
| AccIII | TCCGGA | 1 cut(s) | 253 |
| AciI | CCGC | 3 cut(s) | 116, 1314, 1602 |
| AclI | AACGTT | 1 cut(s) | 810 |
| AclWI | GGATC | 4 cut(s) | 201, 245, 919, 1058 |
| AcsI | RAATTY | 4 cut(s) | 582, 628, 950, 1653 |
| AcuI | CTGAAG | 1 cut(s) | 1610 |
| AdeI | CACNNNGTG | 1 cut(s) | 740 |
| AfaI | GTAC | 5 cut(s) | 97, 906, 1181, 1408, 1539 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 938, 1373 |
| AgsI | TTSAA | 8 cut(s) | 301, 314, 400, 460, 518, 657, 884, 1567 |
| AjnI | CCWGG | 1 cut(s) | 124 |
| AleI | CACNNNNGTG | 1 cut(s) | 641 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 699, 731 |
| AlwI | GGATC | 4 cut(s) | 201, 245, 919, 1058 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1235 |
| Aor13HI | TCCGGA | 1 cut(s) | 253 |
| AoxI | GGCC | 2 cut(s) | 831, 1629 |
| ApeKI | GCWGC | 7 cut(s) | 50, 164, 218, 376, 1255, 1462, 1465 |
| ApoI | RAATTY | 4 cut(s) | 582, 628, 950, 1653 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 901, 933 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 395, 1146 |
| AspS9I | GGNCC | 4 cut(s) | 505, 758, 832, 1630 |
| AsuHPI | GGTGA | 3 cut(s) | 155, 509, 899 |
| AsuNHI | GCTAGC | 1 cut(s) | 1262 |
| AvaII | GGWCC | 2 cut(s) | 505, 758 |
| BaeGI | GKGCMC | 1 cut(s) | 1453 |
| BanII | GRGCYC | 1 cut(s) | 133 |
| BauI | CACGAG | 1 cut(s) | 1436 |
| BbsI | GAAGAC | 3 cut(s) | 329, 593, 860 |
| BbvI | GCAGC | 7 cut(s) | 37, 176, 205, 388, 1267, 1474, 1477 |
| BccI | CCATC | 8 cut(s) | 225, 263, 461, 496, 548, 770, 856, 1505 |
| BceAI | ACGGC | 1 cut(s) | 1520 |
| BciT130I | CCWGG | 1 cut(s) | 126 |
| BfaI | CTAG | 3 cut(s) | 660, 744, 1263 |
| BfmI | CTRYAG | 1 cut(s) | 219 |
| BisI | GCNGC | 7 cut(s) | 51, 165, 219, 377, 1256, 1463, 1466 |
| BlpI | GCTNAGC | 1 cut(s) | 1469 |
| BlsI | GCNGC | 7 cut(s) | 52, 166, 220, 378, 1257, 1464, 1467 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| Bme18I | GGWCC | 2 cut(s) | 505, 758 |
| BmgT120I | GGNCC | 4 cut(s) | 505, 758, 832, 1630 |
| BmiI | GGNNCC | 5 cut(s) | 122, 203, 412, 760, 1149 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BmrI | ACTGGG | 3 cut(s) | 1005, 1245, 1447 |
| BmsI | GCATC | 3 cut(s) | 349, 666, 1512 |
| BmtI | GCTAGC | 1 cut(s) | 1266 |
| BmuI | ACTGGG | 3 cut(s) | 1005, 1245, 1447 |
| BoxI | GACNNNNGTC | 1 cut(s) | 756 |
| BpiI | GAAGAC | 3 cut(s) | 329, 593, 860 |
| BpmI | CTGGAG | 1 cut(s) | 701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1469 |
| BpuEI | CTTGAG | 1 cut(s) | 1058 |
| BsaJI | CCNNGG | 5 cut(s) | 124, 125, 183, 338, 414 |
| BsaWI | WCCGGW | 2 cut(s) | 253, 507 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 938, 1373 |
| Bse1I | ACTGG | 8 cut(s) | 486, 601, 850, 1000, 1132, 1240, 1446, 1453 |
| Bse3DI | GCAATG | 2 cut(s) | 689, 987 |
| BseAI | TCCGGA | 1 cut(s) | 253 |
| BseBI | CCWGG | 1 cut(s) | 126 |
| BseDI | CCNNGG | 5 cut(s) | 124, 125, 183, 338, 414 |
| BseGI | GGATG | 7 cut(s) | 43, 262, 364, 409, 424, 681, 714 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 938, 1373 |
| BseMI | GCAATG | 2 cut(s) | 689, 987 |
| BseMII | CTCAG | 4 cut(s) | 377, 957, 1401, 1483 |
| BseNI | ACTGG | 8 cut(s) | 486, 601, 850, 1000, 1132, 1240, 1446, 1453 |
| BseRI | GAGGAG | 1 cut(s) | 1025 |
| BseSI | GKGCMC | 1 cut(s) | 1453 |
| BseXI | GCAGC | 7 cut(s) | 37, 176, 205, 388, 1267, 1474, 1477 |
| BsgI | GTGCAG | 1 cut(s) | 1248 |
| Bsh1236I | CGCG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 833, 1631 |
| BsiSI | CCGG | 2 cut(s) | 254, 508 |
| BslFI | GGGAC | 1 cut(s) | 744 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 938, 1373 |
| BsmFI | GGGAC | 1 cut(s) | 744 |
| BsmI | GAATGC | 3 cut(s) | 395, 397, 784 |
| BsnI | GGCC | 2 cut(s) | 833, 1631 |
| Bsp1286I | GDGCHC | 2 cut(s) | 133, 1453 |
| Bsp13I | TCCGGA | 1 cut(s) | 253 |
| Bsp1407I | TGTACA | 1 cut(s) | 904 |
| Bsp143I | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1469 |
| Bsp19I | CCATGG | 1 cut(s) | 414 |
| BspACI | CCGC | 3 cut(s) | 116, 1314, 1602 |
| BspANI | GGCC | 2 cut(s) | 833, 1631 |
| BspCNI | CTCAG | 4 cut(s) | 378, 958, 1402, 1482 |
| BspEI | TCCGGA | 1 cut(s) | 253 |
| BspFNI | CGCG | 1 cut(s) | 116 |
| BspHI | TCATGA | 1 cut(s) | 802 |
| BspLI | GGNNCC | 5 cut(s) | 122, 203, 412, 760, 1149 |
| BspMAI | CTGCAG | 1 cut(s) | 223 |
| BspOI | GCTAGC | 1 cut(s) | 1266 |
| BspPI | GGATC | 4 cut(s) | 201, 245, 919, 1058 |
| BsrDI | GCAATG | 2 cut(s) | 689, 987 |
| BsrGI | TGTACA | 1 cut(s) | 904 |
| BsrI | ACTGG | 8 cut(s) | 486, 601, 850, 1000, 1132, 1240, 1446, 1453 |
| BssECI | CCNNGG | 5 cut(s) | 124, 125, 183, 338, 414 |
| BssMI | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| BssSI | CACGAG | 1 cut(s) | 1436 |
| BssT1I | CCWWGG | 3 cut(s) | 183, 338, 414 |
| Bst2BI | CACGAG | 1 cut(s) | 1436 |
| Bst2UI | CCWGG | 1 cut(s) | 126 |
| Bst4CI | ACNGT | 5 cut(s) | 431, 529, 740, 859, 1220 |
| Bst6I | CTCTTC | 1 cut(s) | 1316 |
| BstAUI | TGTACA | 1 cut(s) | 904 |
| BstC8I | GCNNGC | 4 cut(s) | 1260, 1264, 1460, 1602 |
| BstDEI | CTNAG | 6 cut(s) | 386, 449, 966, 987, 1410, 1469 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 7 cut(s) | 43, 262, 364, 409, 424, 681, 714 |
| BstFNI | CGCG | 1 cut(s) | 116 |
| BstKTI | GATC | 8 cut(s) | 209, 253, 293, 927, 1053, 1359, 1401, 1495 |
| BstMBI | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1525, 1606, 1628 |
| BstNI | CCWGG | 1 cut(s) | 126 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 756 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstSFI | CTRYAG | 1 cut(s) | 219 |
| BstSLI | GKGCMC | 1 cut(s) | 1453 |
| BstUI | CGCG | 1 cut(s) | 116 |
| BstV1I | GCAGC | 7 cut(s) | 37, 176, 205, 388, 1267, 1474, 1477 |
| BstV2I | GAAGAC | 3 cut(s) | 329, 593, 860 |
| BsuRI | GGCC | 2 cut(s) | 833, 1631 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsCI | GGATG | 7 cut(s) | 43, 262, 364, 409, 424, 681, 714 |
| BtsI | GCAGTG | 1 cut(s) | 213 |
| Cac8I | GCNNGC | 4 cut(s) | 1260, 1264, 1460, 1602 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1235 |
| CciI | TCATGA | 1 cut(s) | 802 |
| Cfr13I | GGNCC | 4 cut(s) | 505, 758, 832, 1630 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 5 cut(s) | 96, 905, 1180, 1407, 1538 |
| CviAII | CATG | 7 cut(s) | 248, 415, 664, 803, 1057, 1123, 1289 |
| CviQI | GTAC | 5 cut(s) | 96, 905, 1180, 1407, 1538 |
| DdeI | CTNAG | 6 cut(s) | 386, 449, 966, 987, 1410, 1469 |
| DpnI | GATC | 8 cut(s) | 208, 252, 292, 926, 1052, 1358, 1400, 1494 |
| DpnII | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| DraIII | CACNNNGTG | 1 cut(s) | 740 |
| Eam1104I | CTCTTC | 1 cut(s) | 1316 |
| EarI | CTCTTC | 1 cut(s) | 1316 |
| Eco130I | CCWWGG | 3 cut(s) | 183, 338, 414 |
| Eco24I | GRGCYC | 1 cut(s) | 133 |
| Eco32I | GATATC | 1 cut(s) | 841 |
| Eco47I | GGWCC | 2 cut(s) | 505, 758 |
| Eco57I | CTGAAG | 1 cut(s) | 1610 |
| EcoRII | CCWGG | 1 cut(s) | 124 |
| EcoRV | GATATC | 1 cut(s) | 841 |
| EcoT14I | CCWWGG | 3 cut(s) | 183, 338, 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 397 |
| EcoT38I | GRGCYC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 3 cut(s) | 183, 338, 414 |
| FaeI | CATG | 7 cut(s) | 251, 418, 667, 806, 1060, 1126, 1292 |
| FaqI | GGGAC | 1 cut(s) | 744 |
| FatI | CATG | 7 cut(s) | 247, 414, 663, 802, 1056, 1122, 1288 |
| FauI | CCCGC | 2 cut(s) | 109, 1609 |
| FauNDI | CATATG | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 7 cut(s) | 51, 165, 219, 377, 1256, 1463, 1466 |
| FokI | GGATG | 7 cut(s) | 30, 269, 371, 416, 431, 688, 701 |
| FriOI | GRGCYC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 7 cut(s) | 51, 165, 219, 377, 1256, 1463, 1466 |
| FspBI | CTAG | 3 cut(s) | 660, 744, 1263 |
| GluI | GCNGC | 7 cut(s) | 51, 165, 219, 377, 1256, 1463, 1466 |
| GsuI | CTGGAG | 1 cut(s) | 701 |
| HaeIII | GGCC | 2 cut(s) | 833, 1631 |
| HapII | CCGG | 2 cut(s) | 254, 508 |
| HgaI | GACGC | 1 cut(s) | 122 |
| Hin1II | CATG | 7 cut(s) | 251, 418, 667, 806, 1060, 1126, 1292 |
| HincII | GTYRAC | 2 cut(s) | 594, 993 |
| HindII | GTYRAC | 2 cut(s) | 594, 993 |
| HindIII | AAGCTT | 1 cut(s) | 1086 |
| HinfI | GANTC | 8 cut(s) | 80, 435, 650, 973, 1078, 1165, 1363, 1487 |
| HpaI | GTTAAC | 2 cut(s) | 594, 993 |
| HpaII | CCGG | 2 cut(s) | 254, 508 |
| HphI | GGTGA | 3 cut(s) | 155, 509, 899 |
| Hpy166II | GTNNAC | 5 cut(s) | 424, 594, 873, 993, 1182 |
| Hpy8I | GTNNAC | 5 cut(s) | 424, 594, 873, 993, 1182 |
| HpyAV | CCTTC | 3 cut(s) | 256, 337, 878 |
| HpyCH4III | ACNGT | 5 cut(s) | 431, 529, 740, 859, 1220 |
| HpyCH4IV | ACGT | 1 cut(s) | 810 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1525, 1606, 1628 |
| HpyF3I | CTNAG | 6 cut(s) | 386, 449, 966, 987, 1410, 1469 |
| HpySE526I | ACGT | 1 cut(s) | 810 |
| Hsp92II | CATG | 7 cut(s) | 251, 418, 667, 806, 1060, 1126, 1292 |
| Kpn2I | TCCGGA | 1 cut(s) | 253 |
| KspAI | GTTAAC | 2 cut(s) | 594, 993 |
| Kzo9I | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| LmnI | GCTCC | 2 cut(s) | 330, 1418 |
| Lsp1109I | GCAGC | 7 cut(s) | 37, 176, 205, 388, 1267, 1474, 1477 |
| LweI | GCATC | 3 cut(s) | 349, 666, 1512 |
| MaeI | CTAG | 3 cut(s) | 660, 744, 1263 |
| MaeII | ACGT | 1 cut(s) | 810 |
| MaeIII | GTNAC | 3 cut(s) | 452, 490, 1231 |
| MalI | GATC | 8 cut(s) | 208, 252, 292, 926, 1052, 1358, 1400, 1494 |
| MboI | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| MboII | GAAGA | 8 cut(s) | 184, 334, 593, 645, 659, 865, 1333, 1603 |
| MfeI | CAATTG | 2 cut(s) | 618, 900 |
| MhlI | GDGCHC | 2 cut(s) | 133, 1453 |
| MlyI | GAGTC | 1 cut(s) | 1481 |
| MmeI | TCCRAC | 2 cut(s) | 1153, 1318 |
| Mph1103I | ATGCAT | 1 cut(s) | 397 |
| MroI | TCCGGA | 1 cut(s) | 253 |
| MroXI | GAANNNNTTC | 2 cut(s) | 395, 1146 |
| MseI | TTAA | 6 cut(s) | 564, 593, 992, 1328, 1347, 1657 |
| MslI | CAYNNNNRTG | 2 cut(s) | 641, 1446 |
| MspA1I | CMGCKG | 2 cut(s) | 50, 167 |
| MspI | CCGG | 2 cut(s) | 254, 508 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MunI | CAATTG | 2 cut(s) | 618, 900 |
| Mva1269I | GAATGC | 3 cut(s) | 395, 397, 784 |
| MvaI | CCWGG | 1 cut(s) | 126 |
| MvnI | CGCG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1525, 1606, 1628 |
| NcoI | CCATGG | 1 cut(s) | 414 |
| NdeI | CATATG | 1 cut(s) | 75 |
| NdeII | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| NheI | GCTAGC | 1 cut(s) | 1262 |
| NlaIII | CATG | 7 cut(s) | 251, 418, 667, 806, 1060, 1126, 1292 |
| NlaIV | GGNNCC | 5 cut(s) | 122, 203, 412, 760, 1149 |
| NmuCI | GTSAC | 2 cut(s) | 452, 1231 |
| NsiI | ATGCAT | 1 cut(s) | 397 |
| OliI | CACNNNNGTG | 1 cut(s) | 641 |
| PagI | TCATGA | 1 cut(s) | 802 |
| PasI | CCCWGGG | 1 cut(s) | 125 |
| PctI | GAATGC | 3 cut(s) | 395, 397, 784 |
| PdmI | GAANNNNTTC | 2 cut(s) | 395, 1146 |
| PfeI | GAWTC | 7 cut(s) | 80, 435, 650, 973, 1078, 1165, 1363 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 938 |
| PkrI | GCNGC | 7 cut(s) | 52, 166, 220, 378, 1257, 1464, 1467 |
| PleI | GAGTC | 1 cut(s) | 1481 |
| PpsI | GAGTC | 1 cut(s) | 1481 |
| PshAI | GACNNNNGTC | 1 cut(s) | 756 |
| PsiI | TTATAA | 1 cut(s) | 894 |
| Psp1406I | AACGTT | 1 cut(s) | 810 |
| Psp6I | CCWGG | 1 cut(s) | 124 |
| PspGI | CCWGG | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 5 cut(s) | 122, 203, 412, 760, 1149 |
| PspPI | GGNCC | 4 cut(s) | 505, 758, 832, 1630 |
| PstI | CTGCAG | 1 cut(s) | 223 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1235 |
| PvuII | CAGCTG | 2 cut(s) | 50, 167 |
| RsaI | GTAC | 5 cut(s) | 97, 906, 1181, 1408, 1539 |
| RsaNI | GTAC | 5 cut(s) | 96, 905, 1180, 1407, 1538 |
| RseI | CAYNNNNRTG | 2 cut(s) | 641, 1446 |
| SaqAI | TTAA | 6 cut(s) | 564, 593, 992, 1328, 1347, 1657 |
| SatI | GCNGC | 7 cut(s) | 51, 165, 219, 377, 1256, 1463, 1466 |
| Sau3AI | GATC | 8 cut(s) | 206, 250, 290, 924, 1050, 1356, 1398, 1492 |
| Sau96I | GGNCC | 4 cut(s) | 505, 758, 832, 1630 |
| SchI | GAGTC | 1 cut(s) | 1481 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| SduI | GDGCHC | 2 cut(s) | 133, 1453 |
| SfaNI | GCATC | 3 cut(s) | 349, 666, 1512 |
| SfcI | CTRYAG | 1 cut(s) | 219 |
| SinI | GGWCC | 2 cut(s) | 505, 758 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 641, 1446 |
| SmlI | CTYRAG | 1 cut(s) | 1073 |
| SmoI | CTYRAG | 1 cut(s) | 1073 |
| SsiI | CCGC | 3 cut(s) | 116, 1314, 1602 |
| SspI | AATATT | 1 cut(s) | 936 |
| SspMI | CTAG | 3 cut(s) | 660, 744, 1263 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| StyI | CCWWGG | 3 cut(s) | 183, 338, 414 |
| TaaI | ACNGT | 5 cut(s) | 431, 529, 740, 859, 1220 |
| TaiI | ACGT | 1 cut(s) | 813 |
| TaqI | TCGA | 4 cut(s) | 723, 1168, 1401, 1547 |
| TatI | WGTACW | 3 cut(s) | 95, 904, 1179 |
| TfiI | GAWTC | 7 cut(s) | 80, 435, 650, 973, 1078, 1165, 1363 |
| Tru1I | TTAA | 6 cut(s) | 564, 593, 992, 1328, 1347, 1657 |
| Tru9I | TTAA | 6 cut(s) | 564, 593, 992, 1328, 1347, 1657 |
| TseFI | GTSAC | 2 cut(s) | 452, 1231 |
| TseI | GCWGC | 7 cut(s) | 50, 164, 218, 376, 1255, 1462, 1465 |
| Tsp45I | GTSAC | 2 cut(s) | 452, 1231 |
| TspDTI | ATGAA | 8 cut(s) | 356, 366, 627, 791, 819, 963, 1277, 1334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 938 |
| VpaK11BI | GGWCC | 2 cut(s) | 505, 758 |
| XapI | RAATTY | 4 cut(s) | 582, 628, 950, 1653 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 842 |
| XmnI | GAANNNNTTC | 2 cut(s) | 395, 1146 |
| XspI | CTAG | 3 cut(s) | 660, 744, 1263 |
| Zsp2I | ATGCAT | 1 cut(s) | 397 |