Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8170304.1

Orthogroup ID

OG0023029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 672

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8170304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

actcctcgacgcccttccctgccaacaaccaccaccatggttcaacaccgcttcattatgatagcattttcagctcaaggccacatcaatccctccctccaattagcgaagcgcctcatccgcaccactggggcgcgtgtaacctttgtcatcagcgtctccgctcaccgccgcattggcaaccgcgcaactactcctagtggcttgacctttgctcccttctctgacgggaacgacgacggggctaagcctgaagacgataggcagcatttccttagagagctaaagagtcgcagctcgcaagcgattgtggatcttgtcaaatctggtgcgaatgagggccacccttacacttgcatagtgtacactttagctctctcttgggtcgcggaagtggccactgagcttcacctccccagcgctctcctttggattcagccagccacagtgttcgacatatactactattacttcaatggctacaaagatatcatcaggaacaataccggtgctgataacaatgacccctcctttgcagtagaattaccaggact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

185

Amino Acids

20.53

Weight (kDa)

8.76

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023029)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8170304.1_g000001 Rmu_sc0000057.1_g000004
rosa_samantha	Rh4BG172700 Rh4CG186200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	3 cut(s)	136, 186, 389
AciI	CCGC	7 cut(s)	49, 121, 162, 169, 172, 184, 389
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	421
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	44, 475
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	5 cut(s)	74, 283, 297, 374, 406
AluI	AGCT	5 cut(s)	74, 283, 297, 374, 406
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	321
Aor51HI	AGCGCT	1 cut(s)	421
AoxI	GGCC	3 cut(s)	79, 340, 396
ApeKI	GCWGC	2 cut(s)	265, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AsiGI	ACCGGT	1 cut(s)	506
AspLEI	GCGC	4 cut(s)	114, 136, 188, 422
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	158, 401
BalI	TGGCCA	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	277, 306
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	2 cut(s)	115, 423
BglI	GCCNNNNNGGC	1 cut(s)	177
BisI	GCNGC	3 cut(s)	172, 266, 295
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	173, 267, 296
Bme1390I	CCNGG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	277, 306
BseYI	CCCAGC	1 cut(s)	416
Bsh1236I	CGCG	3 cut(s)	136, 186, 389
BshFI	GGCC	3 cut(s)	81, 342, 398
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	507
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	81, 342, 398
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	313
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	7 cut(s)	49, 121, 162, 169, 172, 184, 389
BspANI	GGCC	3 cut(s)	81, 342, 398
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	3 cut(s)	136, 186, 389
BspPI	GGATC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	448
BstACI	GRCGYC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	299, 303, 441
BstDEI	CTNAG	3 cut(s)	246, 275, 402
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	3 cut(s)	136, 186, 389
BstH2I	RGCGCY	2 cut(s)	115, 423
BstHHI	GCGC	4 cut(s)	114, 136, 188, 422
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 120, 177, 395
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstUI	CGCG	3 cut(s)	136, 186, 389
BstV1I	GCAGC	2 cut(s)	277, 306
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	81, 342, 398
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	126, 399, 453
Cac8I	GCNNGC	3 cut(s)	299, 303, 441
CfoI	GCGC	4 cut(s)	114, 136, 188, 422
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	2 cut(s)	18, 145
Csp6I	GTAC	1 cut(s)	364
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	246, 275, 402
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	490
Eco47III	AGCGCT	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	40
FaiI	YATR	5 cut(s)	38, 59, 359, 458, 460
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	172, 266, 295
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	172, 266, 295
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	4 cut(s)	113, 135, 187, 421
GluI	GCNGC	3 cut(s)	172, 266, 295
GsaI	CCCAGC	1 cut(s)	420
HaeII	RGCGCY	2 cut(s)	115, 423
HaeIII	GGCC	3 cut(s)	81, 342, 398
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	2 cut(s)	18, 145
HhaI	GCGC	4 cut(s)	114, 136, 188, 422
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	4 cut(s)	112, 134, 186, 420
HinP1I	GCGC	4 cut(s)	112, 134, 186, 420
HinfI	GANTC	2 cut(s)	289, 433
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	158, 401
Hpy166II	GTNNAC	2 cut(s)	364, 366
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	2 cut(s)	364, 366
Hpy99I	CGWCG	3 cut(s)	12, 239, 242
HpyAV	CCTTC	2 cut(s)	24, 229
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	2 cut(s)	357, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 120, 177, 395
HpyF3I	CTNAG	3 cut(s)	246, 275, 402
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	4 cut(s)	112, 134, 186, 420
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	32, 114, 264, 312, 430, 453, 481, 520, 534
Lsp1109I	GCAGC	2 cut(s)	277, 306
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	101, 542
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	15, 103, 107, 125, 331, 422, 538
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	3 cut(s)	136, 186, 389
MwoI	GCNNNNNNNGC	4 cut(s)	71, 120, 177, 395
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	173, 267, 296
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	547
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	3 cut(s)	172, 266, 295
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	8 cut(s)	76, 146, 212, 285, 299, 376, 408, 414
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	101, 542
SsiI	CCGC	7 cut(s)	49, 121, 162, 169, 172, 184, 389
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	7, 453
TasI	AATT	2 cut(s)	101, 542
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	433
TscAI	CASTG	3 cut(s)	133, 406, 453
TseI	GCWGC	2 cut(s)	265, 294
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	133, 406, 453
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.