Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0023029

Physical Location & Seq

Genomic Coordinates Reverse (-)

40193344 .. 40201693

Gene Structure 8350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACGCAACACCGCTTCATTATGGTAACATTTCCCACTCAAGGCCACATCAATCCTTCCCTCCAATTCGCCAAGCGTCTCATTCGCATCACCGGTGTACATGTAACGTTTGTCACGTCCCTCTCCGCTCACCACCGCATTGGCAATAGCATTAGTACTCCTAGTGGCTTGACCTTCGCCCCCTTTTCCGACGGATATGACCAAGGTTTAAAGTCCGGGGACGATCTTCAGCACTTCATGTCCGAGCTAAAGCGTCGTGGCAAGCAAGCGATCACGGATCTTGTAGTGTCTAGTGCAAGCGAGGGCCACCCATACACTTGCCTATTGTTCGCCTTACTTCTTCCTTGGGTGGCGGAACTGGCACGTGAACTCCACCTCGCAACCGCGCTCCTTTGGATTCAGCCAGCCACAGTTTTCGACATATACTACTACTACTTCAACGGCTACAAAGATCTCATCAACAACAATACTGCTGCTGATAGTGACCCTTCCTATGCGGTAGAAATACCAGGATTGCCGCTAGCGCTGAAGAGCCGCGACCTTCCTTCTTTCATTGTTGCTACGAATCCGTACAACGGAGCTGTCCAATTGTTCGAAGAACAGTTCGAGAAGCTTGGACAAGAAAGCAGGCCAATCATACTAGTGAACACGTTTGATGCACTAGAACCGGAGGCGTTAAAAGCAATAGACAGGTTCAAGCAAACATGTTCAACTCCATTAAGCACAAAAGAACTAGGAAATCATGCAAACAAGAATATCGACTATGATCAAGCACTTGTATTCTTAGTTCACAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

266

Amino Acids

29.7

Weight (kDa)

6.04

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023029)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8170304.1_g000001 Rmu_sc0000057.1_g000004
rosa_samantha	Rh4BG172700 Rh4CG186200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	2 cut(s)	386, 537
AciI	CCGC	8 cut(s)	13, 126, 136, 353, 384, 497, 518, 535
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	212, 548
AcvI	CACGTG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	99, 157, 572
AfeI	AGCGCT	1 cut(s)	525
AfiI	CCNNNNNNNGG	2 cut(s)	41, 575
AflIII	ACRYGT	3 cut(s)	100, 648, 704
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	439, 697, 711
AhlI	ACTAGT	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	247, 581, 613
AluI	AGCT	3 cut(s)	247, 581, 613
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	285
Aor51HI	AGCGCT	1 cut(s)	525
AoxI	GGCC	3 cut(s)	43, 304, 629
ApeKI	GCWGC	1 cut(s)	473
AsiGI	ACCGGT	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	388, 526
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	82, 122
AsuII	TTCGAA	1 cut(s)	594
AsuNHI	GCTAGC	1 cut(s)	520
BbrPI	CACGTG	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	6 cut(s)	162, 291, 521, 641, 662, 734
BfoI	RGCGCY	1 cut(s)	527
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	474, 518, 535
BlsI	GCNGC	3 cut(s)	475, 519, 536
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	217, 510
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	217, 510
BmsI	GCATC	2 cut(s)	96, 646
BmtI	GCTAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	202, 216, 344
BsaWI	WCCGGW	2 cut(s)	92, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 575
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	202, 216, 344
BseLI	CCNNNNNNNGG	2 cut(s)	41, 575
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	460
Bsh1236I	CGCG	2 cut(s)	386, 537
BshFI	GGCC	3 cut(s)	45, 306, 631
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	93, 216, 668
BslFI	GGGAC	2 cut(s)	103, 233
BslI	CCNNNNNNNGG	2 cut(s)	41, 575
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	103, 233
BsnI	GGCC	3 cut(s)	45, 306, 631
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	5 cut(s)	223, 270, 277, 451, 766
BspACI	CCGC	8 cut(s)	13, 126, 136, 353, 384, 497, 518, 535
BspANI	GGCC	3 cut(s)	45, 306, 631
BspFNI	CGCG	2 cut(s)	386, 537
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	202, 216, 344
BssMI	GATC	5 cut(s)	223, 270, 277, 451, 766
BssT1I	CCWWGG	2 cut(s)	202, 344
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	412, 603
Bst6I	CTCTTC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	6 cut(s)	263, 267, 298, 405, 522, 629
BstDEI	CTNAG	1 cut(s)	784
BstFNI	CGCG	2 cut(s)	386, 537
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	388, 526
BstKTI	GATC	5 cut(s)	226, 273, 280, 454, 769
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	223, 270, 277, 451, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 523, 680
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	104, 708
BstSCI	CCNGG	2 cut(s)	215, 508
BstUI	CGCG	2 cut(s)	386, 537
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	2 cut(s)	277, 451
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	2 cut(s)	277, 451
BsuRI	GGCC	3 cut(s)	45, 306, 631
BtrI	CACGTC	1 cut(s)	117
Cac8I	GCNNGC	6 cut(s)	263, 267, 298, 405, 522, 629
CfoI	GCGC	2 cut(s)	388, 526
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	3 cut(s)	13, 65, 242
Csp6I	GTAC	3 cut(s)	98, 156, 571
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	4 cut(s)	101, 238, 705, 743
CviQI	GTAC	3 cut(s)	98, 156, 571
DdeI	CTNAG	1 cut(s)	784
DpnI	GATC	5 cut(s)	225, 272, 279, 453, 768
DpnII	GATC	5 cut(s)	223, 270, 277, 451, 766
DraI	TTTAAA	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	202, 344
Eco47III	AGCGCT	1 cut(s)	525
Eco57I	CTGAAG	2 cut(s)	212, 548
Eco72I	CACGTG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	202, 344
ErhI	CCWWGG	2 cut(s)	202, 344
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	4 cut(s)	104, 241, 708, 746
FaqI	GGGAC	2 cut(s)	103, 233
FatI	CATG	4 cut(s)	100, 237, 704, 742
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	3 cut(s)	474, 518, 535
Fsp4HI	GCNGC	3 cut(s)	474, 518, 535
FspBI	CTAG	6 cut(s)	162, 291, 521, 641, 662, 734
GlaI	GCGC	2 cut(s)	387, 525
GluI	GCNGC	3 cut(s)	474, 518, 535
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	3 cut(s)	45, 306, 631
HapII	CCGG	3 cut(s)	93, 216, 668
HgaI	GACGC	3 cut(s)	13, 65, 242
HhaI	GCGC	2 cut(s)	388, 526
Hin1II	CATG	4 cut(s)	104, 241, 708, 746
Hin6I	GCGC	2 cut(s)	386, 524
HinP1I	GCGC	2 cut(s)	386, 524
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	397, 565
HpaII	CCGG	3 cut(s)	93, 216, 668
HphI	GGTGA	2 cut(s)	82, 122
Hpy166II	GTNNAC	4 cut(s)	98, 368, 646, 790
Hpy188I	TCNGA	2 cut(s)	190, 244
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	4 cut(s)	98, 368, 646, 790
Hpy99I	CGWCG	2 cut(s)	194, 258
HpyAV	CCTTC	5 cut(s)	66, 184, 498, 551, 555
HpyCH4III	ACNGT	2 cut(s)	412, 603
HpyCH4IV	ACGT	4 cut(s)	107, 116, 364, 650
HpyCH4V	TGCA	3 cut(s)	296, 659, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 523, 680
HpyF3I	CTNAG	1 cut(s)	784
HpySE526I	ACGT	4 cut(s)	107, 116, 364, 650
Hsp92II	CATG	4 cut(s)	104, 241, 708, 746
HspAI	GCGC	2 cut(s)	386, 524
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	223, 270, 277, 451, 766
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	2 cut(s)	393, 578
LpnPI	CCDG	9 cut(s)	106, 229, 344, 417, 495, 522, 613, 676, 681
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	2 cut(s)	96, 646
MaeI	CTAG	6 cut(s)	162, 291, 521, 641, 662, 734
MaeII	ACGT	4 cut(s)	107, 116, 364, 650
MaeIII	GTNAC	4 cut(s)	25, 103, 112, 482
MalI	GATC	5 cut(s)	225, 272, 279, 453, 768
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	5 cut(s)	223, 270, 277, 451, 766
MboII	GAAGA	4 cut(s)	218, 332, 541, 608
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	2 cut(s)	277, 451
MluCI	AATT	2 cut(s)	65, 587
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	71, 131, 295, 386, 664
MseI	TTAA	4 cut(s)	209, 677, 719, 799
MslI	CAYNNNNRTG	1 cut(s)	641
MspI	CCGG	3 cut(s)	93, 216, 668
MspR9I	CCNGG	2 cut(s)	217, 510
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	386, 537
MwoI	GCNNNNNNNGC	3 cut(s)	359, 523, 680
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	223, 270, 277, 451, 766
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	4 cut(s)	104, 241, 708, 746
NmuCI	GTSAC	2 cut(s)	112, 482
NspI	RCATGY	2 cut(s)	104, 708
NspV	TTCGAA	1 cut(s)	594
PciI	ACATGT	2 cut(s)	100, 704
PciSI	GCTCTTC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	397, 565
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	475, 519, 536
PmaCI	CACGTG	1 cut(s)	365
PmlI	CACGTG	1 cut(s)	365
Ppu21I	YACGTR	1 cut(s)	365
PscI	ACATGT	2 cut(s)	100, 704
Psp1406I	AACGTT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	508
PspCI	CACGTG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	508
PspPI	GGNCC	1 cut(s)	304
PsrI	GAACNNNNNNTAC	1 cut(s)	771
PsuI	RGATCY	2 cut(s)	277, 451
RsaI	GTAC	3 cut(s)	99, 157, 572
RsaNI	GTAC	3 cut(s)	98, 156, 571
RseI	CAYNNNNRTG	1 cut(s)	641
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	209, 677, 719, 799
SatI	GCNGC	3 cut(s)	474, 518, 535
Sau3AI	GATC	5 cut(s)	223, 270, 277, 451, 766
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	217, 510
SfaNI	GCATC	2 cut(s)	96, 646
SfuI	TTCGAA	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
SpeI	ACTAGT	1 cut(s)	640
Sse9I	AATT	2 cut(s)	65, 587
SsiI	CCGC	8 cut(s)	13, 126, 136, 353, 384, 497, 518, 535
SspMI	CTAG	6 cut(s)	162, 291, 521, 641, 662, 734
StyD4I	CCNGG	2 cut(s)	215, 508
StyI	CCWWGG	2 cut(s)	202, 344
TaaI	ACNGT	2 cut(s)	412, 603
TaiI	ACGT	4 cut(s)	110, 119, 367, 653
TaqI	TCGA	4 cut(s)	417, 594, 606, 759
TasI	AATT	2 cut(s)	65, 587
TatI	WGTACW	2 cut(s)	97, 155
TauI	GCSGC	2 cut(s)	520, 537
TfiI	GAWTC	2 cut(s)	397, 565
Tru1I	TTAA	4 cut(s)	209, 677, 719, 799
Tru9I	TTAA	4 cut(s)	209, 677, 719, 799
TseFI	GTSAC	2 cut(s)	112, 482
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	112, 482
TspDTI	ATGAA	3 cut(s)	7, 226, 541
TspGWI	ACGGA	4 cut(s)	207, 290, 558, 591
XceI	RCATGY	2 cut(s)	104, 708
XspI	CTAG	6 cut(s)	162, 291, 521, 641, 662, 734
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.