Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0023029

Physical Location & Seq

Genomic Coordinates Reverse (-)

30867246 .. 30869913

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTCAACACCGCTTCATTATGATATCATTACCAGCTCAAGGCCACATCAATCCCTCCCTCCAATTAGCCAAGCGCCTCATCCGCACCACTGGGGCGCGTGTAACCTTTGTCACCAGCGTCTCCGCTCACCGCCGCATTGGCAACCGCTCAACTACTCCTAGTGGCTTGACCTTTGCTCCTTTCTCTGACGGGTACGACGACGGGGTTAAGCCTGAAGACGATAGACAGCATGTCTTTAGTGAGCGAAAGAGTCGCAGCTCGCAAGCGATTGTGGATCTTGTCAAATCTGGTGCGAATGAGGGCCACCCTTACACTTGCATAGTGTACACTTTAGTTCTCCCTTGGGTCACGGAAGTGGCCACTGAGCTTCACCTCCCCAGCGCTCTCCTTTGGATTCAGCCAGCCACAGTGTTCGACATATACTACTATTACTTCAACGGCTACAAAGATATCATCAGGAACAATACCGGTGCTGATAACAATGACCCCTCCTTTGCAGTAGAATTACCAGGACTGCCACTATCGTTGAGGAGCCGCGACCTTCCCTCCTTCTTGCTGGCTTCGAGTCCGTACATATACCGTTTCGCTCTCCCATTGTTCGAAGATCAGTTGGAAAAACTTGGGAAACTAAGCAAGGCAATCATACTGGTGAACACGTTCGATGCACTAGAACCCGAGGCCTTAAAAGCAATCGACAACTTCACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

237

Amino Acids

26.49

Weight (kDa)

6.59

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023029)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8170304.1_g000001 Rmu_sc0000057.1_g000004
rosa_samantha	Rh4BG172700 Rh4CG186200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	128, 150
AccII	CGCG	2 cut(s)	100, 540
AciI	CCGC	7 cut(s)	13, 85, 126, 133, 136, 148, 538
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	3 cut(s)	197, 329, 575
AfeI	AGCGCT	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	657
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	8, 439
AhdI	GACNNNNNGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	38, 261, 370
AluI	AGCT	3 cut(s)	38, 261, 370
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	677
Aor51HI	AGCGCT	1 cut(s)	385
AoxI	GGCC	4 cut(s)	43, 304, 360, 681
ApeKI	GCWGC	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AsiGI	ACCGGT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	3 cut(s)	78, 100, 386
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	4 cut(s)	106, 122, 365, 664
AsuII	TTCGAA	1 cut(s)	603
AvaI	CYCGRG	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	162, 671
BfoI	RGCGCY	2 cut(s)	79, 387
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	136, 259, 538
BlsI	GCNGC	3 cut(s)	137, 260, 539
Bme1390I	CCNGG	1 cut(s)	513
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	344, 678
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	97, 654
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	344, 678
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	97, 654
BseRI	GAGGAG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	380
Bsh1236I	CGCG	2 cut(s)	100, 540
BshFI	GGCC	4 cut(s)	45, 306, 362, 683
BshTI	ACCGGT	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	45, 306, 362, 683
BsoBI	CYCGRG	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	277, 607
BspACI	CCGC	7 cut(s)	13, 85, 126, 133, 136, 148, 538
BspANI	GGCC	4 cut(s)	45, 306, 362, 683
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	100, 540
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	603
BsrBI	CCGCTC	2 cut(s)	128, 150
BsrFI	RCCGGY	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	97, 654
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	344, 678
BssMI	GATC	2 cut(s)	277, 607
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	412, 584
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	263, 267, 405, 561
BstDEI	CTNAG	3 cut(s)	366, 632, 711
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	100, 540
BstH2I	RGCGCY	2 cut(s)	79, 387
BstHHI	GCGC	3 cut(s)	78, 100, 386
BstKTI	GATC	2 cut(s)	280, 610
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	277, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 141, 689
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	511
BstUI	CGCG	2 cut(s)	100, 540
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	45, 306, 362, 683
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	4 cut(s)	90, 363, 417, 705
Cac8I	GCNNGC	4 cut(s)	263, 267, 405, 561
CfoI	GCGC	3 cut(s)	78, 100, 386
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	196, 328, 574
CspAI	ACCGGT	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	3 cut(s)	196, 328, 574
DdeI	CTNAG	3 cut(s)	366, 632, 711
DpnI	GATC	2 cut(s)	279, 609
DpnII	GATC	2 cut(s)	277, 607
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	360
Eam1105I	GACNNNNNGTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	683
Eco32I	GATATC	2 cut(s)	27, 454
Eco47III	AGCGCT	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	2 cut(s)	27, 454
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	236
FaiI	YATR	8 cut(s)	23, 234, 323, 422, 424, 578, 580, 647
FatI	CATG	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	136, 259, 538
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	136, 259, 538
FspBI	CTAG	2 cut(s)	162, 671
GlaI	GCGC	3 cut(s)	77, 99, 385
GluI	GCNGC	3 cut(s)	136, 259, 538
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	2 cut(s)	79, 387
HaeIII	GGCC	4 cut(s)	45, 306, 362, 683
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	78, 100, 386
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	3 cut(s)	76, 98, 384
HinP1I	GCGC	3 cut(s)	76, 98, 384
HinfI	GANTC	3 cut(s)	253, 397, 568
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	4 cut(s)	106, 122, 365, 664
Hpy166II	GTNNAC	3 cut(s)	328, 330, 655
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	3 cut(s)	328, 330, 655
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyAV	CCTTC	2 cut(s)	554, 562
HpyCH4III	ACNGT	2 cut(s)	412, 584
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	3 cut(s)	321, 500, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 141, 689
HpyF3I	CTNAG	3 cut(s)	366, 632, 711
HpySE526I	ACGT	1 cut(s)	659
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	3 cut(s)	76, 98, 384
Kzo9I	GATC	2 cut(s)	277, 607
LmnI	GCTCC	2 cut(s)	184, 534
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	162, 671
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	3 cut(s)	103, 112, 349
MalI	GATC	2 cut(s)	279, 609
MbiI	CCGCTC	2 cut(s)	128, 150
MboI	GATC	2 cut(s)	277, 607
MboII	GAAGA	2 cut(s)	230, 617
MflI	RGATCY	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	65, 506
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	262, 577
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	9 cut(s)	67, 71, 89, 295, 386, 502, 525, 559, 673
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	2 cut(s)	210, 686
MslI	CAYNNNNRTG	2 cut(s)	356, 650
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	2 cut(s)	100, 540
MwoI	GCNNNNNNNGC	3 cut(s)	84, 141, 689
NdeII	GATC	2 cut(s)	277, 607
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	536
NmuCI	GTSAC	2 cut(s)	112, 349
NspI	RCATGY	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	603
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	137, 260, 539
PleI	GAGTC	2 cut(s)	261, 576
PpsI	GAGTC	2 cut(s)	261, 576
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	3 cut(s)	197, 329, 575
RsaNI	GTAC	3 cut(s)	196, 328, 574
RseI	CAYNNNNRTG	2 cut(s)	356, 650
SaqAI	TTAA	2 cut(s)	210, 686
SatI	GCNGC	3 cut(s)	136, 259, 538
Sau3AI	GATC	2 cut(s)	277, 607
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	262, 577
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	8 cut(s)	40, 110, 176, 263, 372, 378, 546, 662
SfaNI	GCATC	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	356, 650
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	65, 506
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	7 cut(s)	13, 85, 126, 133, 136, 148, 538
SspMI	CTAG	2 cut(s)	162, 671
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	412, 584
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	5 cut(s)	417, 566, 603, 663, 696
TasI	AATT	2 cut(s)	65, 506
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	138, 540
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	210, 686
Tru9I	TTAA	2 cut(s)	210, 686
TscAI	CASTG	4 cut(s)	97, 370, 417, 712
TseFI	GTSAC	2 cut(s)	112, 349
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	2 cut(s)	112, 349
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	2 cut(s)	368, 561
TspRI	CASTG	4 cut(s)	97, 370, 417, 712
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	2 cut(s)	162, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.