Rmu_sc0000057.1_g000004

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000057.1
OG0023029
Physical Location & Seq
Forward (+)
10967 .. 11740
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000057.1_g000004.1.cds

Sequence Viewer

Length: 774 bp
atggttcaacaccgcttcattatgatagcattttcagctcaaggccacatcaatccctccctccaattagcgaagcgcctcatccgcaccactggggcgcgtgtaacctttgtcatcagcgtctccgctcaccgccgcattggcaaccgcgcaactactcctagtggcttgacctttgctcccttctctgacgggaacgacgacggggctaagcctgaagacgataggcagcatttccttagagagctaaagagtcgcagctcgcaagcgattgtggatcttgtcaaatctggtgcgaatgagggccacccttacacttgcatagtgtacactttagctctctcttgggtcgcggaagtggccactgagcttcacctccccagcgctctcctttggattcagccagccacagtgttcgacatatactactattacttcaatggctacaaagatatcatcaggaacaataccggtgctgataacaatgacccctcctttgcagtagaattaccaggactgccactatcgttgaggagccgcgaccttccctccttcttgctggcttcgagtccgtacatataccgtttcgctctcccattgttcgaagatcagttggaaaaacttgggaaactaagcaaggcaatcatactggtgaacacgttcgatgcactagaaccagaggccttaaaagcaactgacaagaatttcaaggcgtttctaaaggagattgaagaagtagtcaatttcgatttcgatccgcagcagtcaatttga

Protein Analysis

257

Amino Acids

28.81

Weight (kDa)

6.08

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023029)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8170304.1_g000001 Rmu_sc0000057.1_g000004
rosa_samantha Rh4BG172700 Rh4CG186200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 4 cut(s) 100, 150, 353, 540
AciI CCGC 9 cut(s) 13, 85, 126, 133, 136, 148, 353, 538, 758
AclWI GGATC 2 cut(s) 285, 749
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 329, 575
AfeI AGCGCT 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 657
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 4 cut(s) 8, 439, 709, 731
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 5 cut(s) 38, 247, 261, 338, 370
AluI AGCT 5 cut(s) 38, 247, 261, 338, 370
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 285, 749
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 4 cut(s) 43, 304, 360, 681
ApeKI GCWGC 3 cut(s) 229, 258, 760
ApoI RAATTY 1 cut(s) 703
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AsiGI ACCGGT 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 4 cut(s) 78, 100, 152, 386
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 122, 365, 664
AsuII TTCGAA 1 cut(s) 603
BalI TGGCCA 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 241, 270
BciT130I CCWGG 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 162, 671
BfoI RGCGCY 2 cut(s) 79, 387
BglI GCCNNNNNGGC 1 cut(s) 141
BisI GCNGC 5 cut(s) 136, 230, 259, 538, 761
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 5 cut(s) 137, 231, 260, 539, 762
Bme1390I CCNGG 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 536
BmrFI CCNGG 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 655
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 753
BsaWI WCCGGW 1 cut(s) 470
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 533, 563
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 97, 654
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 753
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 97, 654
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 2 cut(s) 241, 270
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 4 cut(s) 100, 150, 353, 540
BshFI GGCC 4 cut(s) 45, 306, 362, 683
BshTI ACCGGT 1 cut(s) 470
BsiSI CCGG 1 cut(s) 471
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 4 cut(s) 45, 306, 362, 683
Bsp119I TTCGAA 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 3 cut(s) 277, 607, 754
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 9 cut(s) 13, 85, 126, 133, 136, 148, 353, 538, 758
BspANI GGCC 4 cut(s) 45, 306, 362, 683
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 4 cut(s) 100, 150, 353, 540
BspLI GGNNCC 1 cut(s) 536
BspPI GGATC 2 cut(s) 285, 749
BspT104I TTCGAA 1 cut(s) 603
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 97, 654
BssAI RCCGGY 1 cut(s) 470
BssMI GATC 3 cut(s) 277, 607, 754
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 412, 584
BstAUI TGTACA 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 263, 267, 405, 561
BstDEI CTNAG 4 cut(s) 210, 239, 366, 632
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 4 cut(s) 100, 150, 353, 540
BstH2I RGCGCY 2 cut(s) 79, 387
BstHHI GCGC 4 cut(s) 78, 100, 152, 386
BstKTI GATC 3 cut(s) 280, 610, 757
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 277, 607, 754
BstMWI GCNNNNNNNGC 5 cut(s) 35, 84, 141, 359, 689
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 511
BstUI CGCG 4 cut(s) 100, 150, 353, 540
BstV1I GCAGC 2 cut(s) 241, 270
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 4 cut(s) 45, 306, 362, 683
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 90, 363, 417
Cac8I GCNNGC 4 cut(s) 263, 267, 405, 561
CfoI GCGC 4 cut(s) 78, 100, 152, 386
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 328, 574
CspAI ACCGGT 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviQI GTAC 2 cut(s) 328, 574
DdeI CTNAG 4 cut(s) 210, 239, 366, 632
DpnI GATC 3 cut(s) 279, 609, 756
DpnII GATC 3 cut(s) 277, 607, 754
EaeI YGGCCR 1 cut(s) 360
Eco147I AGGCCT 1 cut(s) 683
Eco32I GATATC 1 cut(s) 454
Eco47III AGCGCT 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 511
EcoRV GATATC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 127
FaiI YATR 7 cut(s) 23, 323, 422, 424, 578, 580, 647
Fnu4HI GCNGC 5 cut(s) 136, 230, 259, 538, 761
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 5 cut(s) 136, 230, 259, 538, 761
FspBI CTAG 2 cut(s) 162, 671
GlaI GCGC 4 cut(s) 77, 99, 151, 385
GluI GCNGC 5 cut(s) 136, 230, 259, 538, 761
GsaI CCCAGC 1 cut(s) 384
HaeII RGCGCY 2 cut(s) 79, 387
HaeIII GGCC 4 cut(s) 45, 306, 362, 683
HapII CCGG 1 cut(s) 471
HgaI GACGC 1 cut(s) 109
HhaI GCGC 4 cut(s) 78, 100, 152, 386
Hin6I GCGC 4 cut(s) 76, 98, 150, 384
HinP1I GCGC 4 cut(s) 76, 98, 150, 384
HinfI GANTC 3 cut(s) 253, 397, 568
HpaII CCGG 1 cut(s) 471
HphI GGTGA 3 cut(s) 122, 365, 664
Hpy166II GTNNAC 3 cut(s) 328, 330, 655
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 3 cut(s) 328, 330, 655
Hpy99I CGWCG 2 cut(s) 203, 206
HpyAV CCTTC 3 cut(s) 193, 554, 562
HpyCH4III ACNGT 2 cut(s) 412, 584
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 3 cut(s) 321, 500, 668
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 84, 141, 359, 689
HpyF3I CTNAG 4 cut(s) 210, 239, 366, 632
HpySE526I ACGT 1 cut(s) 659
HspAI GCGC 4 cut(s) 76, 98, 150, 384
Kzo9I GATC 3 cut(s) 277, 607, 754
LmnI GCTCC 2 cut(s) 184, 534
Lsp1109I GCAGC 2 cut(s) 241, 270
LweI GCATC 1 cut(s) 655
MaeI CTAG 2 cut(s) 162, 671
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 279, 609, 756
MbiI CCGCTC 1 cut(s) 128
MboI GATC 3 cut(s) 277, 607, 754
MboII GAAGA 3 cut(s) 230, 617, 743
MflI RGATCY 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 5 cut(s) 65, 506, 703, 742, 768
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 2 cut(s) 262, 577
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 9 cut(s) 67, 71, 89, 295, 386, 502, 525, 559, 673
Mox20I TGGCCA 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 686
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 1 cut(s) 362
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 4 cut(s) 100, 150, 353, 540
MwoI GCNNNNNNNGC 5 cut(s) 35, 84, 141, 359, 689
NdeII GATC 3 cut(s) 277, 607, 754
NlaIV GGNNCC 1 cut(s) 536
NspV TTCGAA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 683
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 5 cut(s) 137, 231, 260, 539, 762
PleI GAGTC 2 cut(s) 261, 576
PpsI GAGTC 2 cut(s) 261, 576
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 329, 575
RsaNI GTAC 2 cut(s) 328, 574
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 5 cut(s) 136, 230, 259, 538, 761
Sau3AI GATC 3 cut(s) 277, 607, 754
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 2 cut(s) 262, 577
ScrFI CCNGG 1 cut(s) 513
SfaNI GCATC 1 cut(s) 655
SfuI TTCGAA 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 5 cut(s) 65, 506, 703, 742, 768
SseBI AGGCCT 1 cut(s) 683
SsiI CCGC 9 cut(s) 13, 85, 126, 133, 136, 148, 353, 538, 758
SspMI CTAG 2 cut(s) 162, 671
StuI AGGCCT 1 cut(s) 683
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 2 cut(s) 412, 584
TaiI ACGT 1 cut(s) 662
TaqI TCGA 6 cut(s) 417, 566, 603, 663, 747, 753
TasI AATT 5 cut(s) 65, 506, 703, 742, 768
TatI WGTACW 1 cut(s) 327
TauI GCSGC 2 cut(s) 138, 540
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 3 cut(s) 97, 370, 417
TseI GCWGC 3 cut(s) 229, 258, 760
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 3 cut(s) 97, 370, 417
XapI RAATTY 1 cut(s) 703
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 2 cut(s) 162, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.