Rmu_co8240407.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240407.1
OG0021624
Physical Location & Seq
Forward (+)
1 .. 339
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240407.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
agccattccaaagaggacgtccgtactttcgttaaagtacggacggcgacgctacagctcggctcggggtgcgaaggagcggcaggggttgctggaaggacgccaggcgtcctgcggagaggtctgcagtcggcggagttgtcggcgacgtcgttgcagcgctgcctagaaaacctgcagttgcaggtcgggttgctgccagaacctgcaaccccgacgtcctccgacctagaacgctgcccagaaccgatatgcctccggcctccctcctgcaagccgccgtcgccgtctgtactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.42

Weight (kDa)

8.38

Isoelectric Point (pI)

76.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021624)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8240407.1_g000001 Rmu_sc0000135.1_g000003 Rmu_sc0001075.1_g000032 Rmu_sc0008191.1_g000002
rosa_roxburghii Rroxscaffold_5G00367550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 21, 152, 221
Acc36I ACCTGC 3 cut(s) 175, 183, 214
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 4 cut(s) 80, 115, 134, 278
AcyI GRCGYC 5 cut(s) 18, 101, 108, 149, 218
AfaI GTAC 3 cut(s) 25, 39, 294
AfeI AGCGCT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 4 cut(s) 157, 162, 196, 237
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspLEI GCGC 1 cut(s) 162
AvaI CYCGRG 1 cut(s) 64
BbvI GCAGC 4 cut(s) 149, 169, 183, 224
BceAI ACGGC 3 cut(s) 60, 265, 271
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 167, 230
BfmI CTRYAG 3 cut(s) 53, 125, 176
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 3 cut(s) 175, 183, 214
BisI GCNGC 6 cut(s) 81, 158, 163, 197, 238, 278
BlsI GCNGC 6 cut(s) 82, 159, 164, 198, 239, 279
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 105
BsaHI GRCGYC 5 cut(s) 18, 101, 108, 149, 218
BseBI CCWGG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 149, 169, 183, 224
BshFI GGCC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 64
BspACI CCGC 4 cut(s) 80, 115, 134, 278
BspANI GGCC 1 cut(s) 262
BspMAI CTGCAG 2 cut(s) 129, 180
BspMI ACCTGC 3 cut(s) 175, 183, 214
BsrBI CCGCTC 1 cut(s) 80
BssNI GRCGYC 5 cut(s) 18, 101, 108, 149, 218
Bst2UI CCWGG 1 cut(s) 105
BstACI GRCGYC 5 cut(s) 18, 101, 108, 149, 218
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 69, 89, 283
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 3 cut(s) 53, 125, 176
BstV1I GCAGC 4 cut(s) 149, 169, 183, 224
BsuRI GGCC 1 cut(s) 262
BveI ACCTGC 3 cut(s) 175, 183, 214
Cac8I GCNNGC 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 1 cut(s) 162
CseI GACGC 3 cut(s) 58, 97, 109
Csp6I GTAC 3 cut(s) 24, 38, 293
CviJI RGCY 5 cut(s) 3, 58, 63, 262, 277
CviKI_1 RGCY 5 cut(s) 3, 58, 63, 262, 277
CviQI GTAC 3 cut(s) 24, 38, 293
EciI GGCGGA 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 103
FaiI YATR 1 cut(s) 253
Fnu4HI GCNGC 6 cut(s) 81, 158, 163, 197, 238, 278
Fsp4HI GCNGC 6 cut(s) 81, 158, 163, 197, 238, 278
FspBI CTAG 2 cut(s) 167, 230
GlaI GCGC 1 cut(s) 161
GluI GCNGC 6 cut(s) 81, 158, 163, 197, 238, 278
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 259
HgaI GACGC 3 cut(s) 58, 97, 109
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 5 cut(s) 18, 101, 108, 149, 218
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HpaII CCGG 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 226
Hpy99I CGWCG 5 cut(s) 52, 151, 154, 220, 286
HpyAV CCTTC 2 cut(s) 68, 90
HpyCH4IV ACGT 3 cut(s) 18, 149, 218
HpyCH4V TGCA 6 cut(s) 127, 157, 178, 184, 209, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 89, 283
HpySE526I ACGT 3 cut(s) 18, 149, 218
Hsp92I GRCGYC 5 cut(s) 18, 101, 108, 149, 218
HspAI GCGC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 4 cut(s) 149, 169, 183, 224
MaeI CTAG 2 cut(s) 167, 230
MaeII ACGT 3 cut(s) 18, 149, 218
MbiI CCGCTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 6 cut(s) 7, 113, 232, 266, 273, 277
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 69, 89, 283
NmeAIII GCCGAG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PkrI GCNGC 6 cut(s) 82, 159, 164, 198, 239, 279
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PstI CTGCAG 2 cut(s) 129, 180
PstNI CAGNNNCTG 1 cut(s) 206
RsaI GTAC 3 cut(s) 25, 39, 294
RsaNI GTAC 3 cut(s) 24, 38, 293
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 6 cut(s) 81, 158, 163, 197, 238, 278
ScrFI CCNGG 1 cut(s) 105
SetI ASST 9 cut(s) 21, 60, 124, 152, 177, 189, 208, 221, 231
SfcI CTRYAG 3 cut(s) 53, 125, 176
SsiI CCGC 4 cut(s) 80, 115, 134, 278
SspMI CTAG 2 cut(s) 167, 230
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 3 cut(s) 21, 152, 221
TatI WGTACW 1 cut(s) 292
TauI GCSGC 2 cut(s) 83, 280
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 4 cut(s) 157, 162, 196, 237
TspGWI ACGGA 2 cut(s) 11, 55
XspI CTAG 2 cut(s) 167, 230
ZraI GACGTC 3 cut(s) 19, 150, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.