Rmu_sc0008191.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008191.1
OG0021624
Physical Location & Seq
Reverse (-)
8443 .. 11014
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008191.1_g000002.1.cds

Sequence Viewer

Length: 702 bp
atgaattaccctatccattgtgttggatatgccatgacgccaagattttacgatagagaatatctcagtaaaaaagcaccagaaggattcactcgaaagagccctaatcaagatatagaagtgattacaagccttatggaagcatttgataagatatcagaagatcaagaagaagcagagttattacgtcaacaatatgccatttttcatcagggaaaatgtatttttgctacacaagttgttcagacatatgctgtaactatggatgccattgattggtggtcaacgtatggttcacaagttccagaattagcagaagttgcacaaaaggctaagacggcgaggcgcggcttgctggagggacgccgggggtcgtgcggaggggtctgcggtccggtggagtcgccggcgatggttctgcagtgctgcagagaacctgcaactgcaggtgaggtggctgcccagaaaccggcaagcccgacctcctccaacctcgaacgccgcccagaagaggtctgggacgcctccggccagctccgcgcctccgtcgtcgcctggaaccgccacctgcagcgccgtccgcactttagcgaaagaagcttcaagcccaaaactgatctagaaacagagtttaacatgaaaactcccgacatttccggattctccaatgggacaaacagtgatggaaaggaattcaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

233

Amino Acids

26.15

Weight (kDa)

5.89

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021624)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8240407.1_g000001 Rmu_sc0000135.1_g000003 Rmu_sc0001075.1_g000032 Rmu_sc0008191.1_g000002
rosa_roxburghii Rroxscaffold_5G00367550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 437, 576
Acc36I ACCTGC 3 cut(s) 437, 445, 576
AccB7I CCANNNNNTGG 1 cut(s) 276
AccII CGCG 2 cut(s) 348, 540
AccIII TCCGGA 1 cut(s) 656
AciI CCGC 7 cut(s) 348, 378, 390, 502, 538, 562, 581
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 1 cut(s) 692
AcyI GRCGYC 3 cut(s) 38, 364, 522
AfiI CCNNNNNNNGG 3 cut(s) 276, 469, 511
AgsI TTSAA 2 cut(s) 604, 697
AjnI CCWGG 1 cut(s) 554
AluBI AGCT 2 cut(s) 535, 600
AluI AGCT 2 cut(s) 535, 600
Aor13HI TCCGGA 1 cut(s) 656
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 3 cut(s) 426, 458, 571
ApoI RAATTY 1 cut(s) 692
AspLEI GCGC 3 cut(s) 348, 542, 576
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 413, 445, 583
BccI CCATC 2 cut(s) 406, 677
BceAI ACGGC 2 cut(s) 354, 561
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 556
BcnI CCSGG 1 cut(s) 368
BfaI CTAG 1 cut(s) 620
BfmI CTRYAG 4 cut(s) 419, 427, 444, 569
BfoI RGCGCY 1 cut(s) 577
BfuAI ACCTGC 3 cut(s) 437, 445, 576
BisI GCNGC 5 cut(s) 349, 427, 459, 502, 572
BlsI GCNGC 5 cut(s) 350, 428, 460, 503, 573
Bme1390I CCNGG 2 cut(s) 368, 556
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 2 cut(s) 368, 556
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 368
BsaHI GRCGYC 3 cut(s) 38, 364, 522
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 2 cut(s) 394, 656
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 469, 511
Bse118I RCCGGY 2 cut(s) 406, 469
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 1 cut(s) 556
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 276, 469, 511
BseMII CTCAG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 3 cut(s) 413, 445, 583
Bsh1236I CGCG 2 cut(s) 348, 540
BshFI GGCC 1 cut(s) 531
BsiSI CCGG 6 cut(s) 367, 395, 407, 470, 528, 657
BslFI GGGAC 3 cut(s) 375, 533, 685
BslI CCNNNNNNNGG 3 cut(s) 276, 469, 511
BsmFI GGGAC 3 cut(s) 375, 533, 685
BsnI GGCC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 656
Bsp143I GATC 2 cut(s) 163, 616
BspACI CCGC 7 cut(s) 348, 378, 390, 502, 538, 562, 581
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 656
BspFNI CGCG 2 cut(s) 348, 540
BspLI GGNNCC 1 cut(s) 560
BspMAI CTGCAG 4 cut(s) 423, 431, 448, 573
BspMI ACCTGC 3 cut(s) 437, 445, 576
BsrFI RCCGGY 2 cut(s) 406, 469
BssAI RCCGGY 2 cut(s) 406, 469
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 2 cut(s) 163, 616
BssNI GRCGYC 3 cut(s) 38, 364, 522
Bst2UI CCWGG 1 cut(s) 556
Bst4CI ACNGT 1 cut(s) 680
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 3 cut(s) 38, 364, 522
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 353, 408, 475, 533
BstDEI CTNAG 2 cut(s) 65, 333
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 348, 540
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 3 cut(s) 348, 542, 576
BstKTI GATC 2 cut(s) 166, 619
BstMBI GATC 2 cut(s) 163, 616
BstMWI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 352, 537, 580, 597
BstNI CCWGG 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 366, 554
BstSFI CTRYAG 4 cut(s) 419, 427, 444, 569
BstUI CGCG 2 cut(s) 348, 540
BstV1I GCAGC 3 cut(s) 413, 445, 583
BstXI CCANNNNNNTGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 2 cut(s) 428, 685
BveI ACCTGC 3 cut(s) 437, 445, 576
Cac8I GCNNGC 4 cut(s) 353, 408, 475, 533
CfoI GCGC 3 cut(s) 348, 542, 576
Cfr10I RCCGGY 2 cut(s) 406, 469
Cfr13I GGNCC 1 cut(s) 392
CpoI CGGWCCG 1 cut(s) 392
CseI GACGC 3 cut(s) 46, 372, 530
CspI CGGWCCG 1 cut(s) 392
CviAII CATG 2 cut(s) 34, 637
DdeI CTNAG 2 cut(s) 65, 333
DpnI GATC 2 cut(s) 165, 618
DpnII GATC 2 cut(s) 163, 616
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 104
Eco32I GATATC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 554
EcoRV GATATC 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 2 cut(s) 37, 640
FaqI GGGAC 3 cut(s) 375, 533, 685
FatI CATG 2 cut(s) 33, 636
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 349, 427, 459, 502, 572
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 5 cut(s) 349, 427, 459, 502, 572
FspBI CTAG 1 cut(s) 620
GlaI GCGC 3 cut(s) 347, 541, 575
GluI GCNGC 5 cut(s) 349, 427, 459, 502, 572
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 1 cut(s) 531
HapII CCGG 6 cut(s) 367, 395, 407, 470, 528, 657
HgaI GACGC 3 cut(s) 46, 372, 530
HhaI GCGC 3 cut(s) 348, 542, 576
Hin1I GRCGYC 3 cut(s) 38, 364, 522
Hin1II CATG 2 cut(s) 37, 640
Hin6I GCGC 3 cut(s) 346, 540, 574
HinP1I GCGC 3 cut(s) 346, 540, 574
HincII GTYRAC 2 cut(s) 191, 285
HindII GTYRAC 2 cut(s) 191, 285
HindIII AAGCTT 1 cut(s) 598
HinfI GANTC 3 cut(s) 87, 401, 660
HpaII CCGG 6 cut(s) 367, 395, 407, 470, 528, 657
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 3 cut(s) 191, 285, 296
Hpy188I TCNGA 2 cut(s) 160, 246
Hpy188III TCNNGA 6 cut(s) 110, 167, 305, 620, 647, 657
Hpy8I GTNNAC 3 cut(s) 191, 285, 296
Hpy99I CGWCG 2 cut(s) 551, 554
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 680
HpyCH4IV ACGT 2 cut(s) 187, 287
HpyCH4V TGCA 6 cut(s) 323, 421, 429, 440, 446, 571
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 352, 537, 580, 597
HpyF3I CTNAG 2 cut(s) 65, 333
HpySE526I ACGT 2 cut(s) 187, 287
Hsp92I GRCGYC 3 cut(s) 38, 364, 522
Hsp92II CATG 2 cut(s) 37, 640
HspAI GCGC 3 cut(s) 346, 540, 574
Kpn2I TCCGGA 1 cut(s) 656
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 163, 616
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 3 cut(s) 413, 445, 583
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 620
MaeII ACGT 2 cut(s) 187, 287
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 165, 618
MboI GATC 2 cut(s) 163, 616
MboII GAAGA 3 cut(s) 173, 182, 521
MfeI CAATTG 1 cut(s) 697
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 4, 308, 692, 697
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 2 cut(s) 4, 513
MreI CGCCGGCG 1 cut(s) 406
MroI TCCGGA 1 cut(s) 656
MroNI GCCGGC 1 cut(s) 406
MseI TTAA 1 cut(s) 633
MspI CCGG 6 cut(s) 367, 395, 407, 470, 528, 657
MspR9I CCNGG 2 cut(s) 368, 556
MunI CAATTG 1 cut(s) 697
MvaI CCWGG 1 cut(s) 556
MvnI CGCG 2 cut(s) 348, 540
MwoI GCNNNNNNNGC 7 cut(s) 320, 329, 338, 352, 537, 580, 597
NaeI GCCGGC 1 cut(s) 408
NciI CCSGG 1 cut(s) 368
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 163, 616
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 2 cut(s) 37, 640
NlaIV GGNNCC 1 cut(s) 560
PaqCI CACCTGC 2 cut(s) 437, 576
PdiI GCCGGC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 87, 660
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 5 cut(s) 350, 428, 460, 503, 573
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 554
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 1 cut(s) 560
PspPI GGNCC 1 cut(s) 392
PstI CTGCAG 4 cut(s) 423, 431, 448, 573
Rsr2I CGGWCCG 1 cut(s) 392
RsrII CGGWCCG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 5 cut(s) 349, 427, 459, 502, 572
Sau3AI GATC 2 cut(s) 163, 616
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 368, 556
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 4 cut(s) 419, 427, 444, 569
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 1 cut(s) 392
Sse9I AATT 4 cut(s) 4, 308, 692, 697
SsiI CCGC 7 cut(s) 348, 378, 390, 502, 538, 562, 581
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 2 cut(s) 366, 554
TaaI ACNGT 1 cut(s) 680
TaiI ACGT 2 cut(s) 190, 290
TaqI TCGA 2 cut(s) 94, 495
TasI AATT 4 cut(s) 4, 308, 692, 697
TauI GCSGC 2 cut(s) 351, 504
TfiI GAWTC 2 cut(s) 87, 660
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 2 cut(s) 428, 685
TseI GCWGC 3 cut(s) 426, 458, 571
TspDTI ATGAA 3 cut(s) 17, 197, 653
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 428, 685
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 1 cut(s) 692
XbaI TCTAGA 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.