Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000135.1

Orthogroup ID

OG0021624

Physical Location & Seq

Genomic Coordinates Reverse (-)

15628 .. 18049

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000135.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgtgtcaggagaaattggtacaagaagctgtggatacacttcttgataatggaattcgtggacaaccccaacatatagctccggctttacccaaacttttctggttcaccctaacattccccacttgtccgactgttgctgagcaatttttggatatcaaacggacctccccaaaaggtaattttaatgtggccaatttcccctcttttgcaatcagtttcgctacagcacctgctgctctagctaattgtccaccctttccaagtgtgatttctatgttatgtatggtcgtgcctaaaggcatatcgctctgctcggggcgcgacggagaggcggaggttgccggaaggatgccaggggtcgggcggagaggtctgcagtcggtggagtcgccggcgacgtcgttgcagcgctgcccagaacctgcaactcggaactcctccgacctcgaacgctgcccagacccgtcagccaagcctccggcctcctgctgcagagaacctgcaactgcaggtgaggtggctgcccagaaaccggcaagcccgacctcctccgacctcgaacgccgcccagaagaggtctgggacgcctccggcctccctccggccagctccgcgccgacgtcgtcgcctggaaccgctacctgcagcgccgtccgcactttagcgaaagtgcggacgaaagaaatcaatcccttgattgggcaggaagattacttcgcgggtgatgagttctacctgaaaagggaggtgcttaataagctggatgaagaaactcatccagaagttttgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 ko03013 map00195 map01100 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 IF-2

Protein Analysis

265

Amino Acids

28.35

Weight (kDa)

5.26

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021624)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8240407.1_g000001 Rmu_sc0000135.1_g000003 Rmu_sc0001075.1_g000032 Rmu_sc0008191.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	241, 503
AatII	GACGTC	2 cut(s)	404, 626
Acc36I	ACCTGC	5 cut(s)	241, 433, 503, 511, 653
AccII	CGCG	3 cut(s)	324, 617, 722
AciI	CCGC	8 cut(s)	335, 367, 568, 615, 639, 658, 676, 722
AcoI	YGGCCR	2 cut(s)	192, 606
AcsI	RAATTY	1 cut(s)	54
AcyI	GRCGYC	3 cut(s)	401, 588, 623
AfaI	GTAC	1 cut(s)	21
AfeI	AGCGCT	1 cut(s)	413
AfiI	CCNNNNNNNGG	7 cut(s)	362, 535, 577, 604, 701, 702, 745
AjnI	CCWGG	2 cut(s)	355, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	5 cut(s)	29, 80, 245, 612, 763
AluI	AGCT	5 cut(s)	29, 80, 245, 612, 763
AlwNI	CAGNNNCTG	2 cut(s)	233, 425
Ama87I	CYCGRG	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	413
AoxI	GGCC	4 cut(s)	192, 483, 595, 606
ApeKI	GCWGC	7 cut(s)	236, 409, 414, 456, 492, 524, 648
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	4 cut(s)	324, 414, 619, 653
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	100, 527, 737
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	194
BbvI	GCAGC	7 cut(s)	223, 401, 421, 443, 479, 511, 660
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	357, 633
BciVI	GTATCC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	5 cut(s)	225, 377, 493, 510, 646
BfoI	RGCGCY	2 cut(s)	415, 654
BfuAI	ACCTGC	5 cut(s)	241, 433, 503, 511, 653
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	8 cut(s)	237, 410, 415, 457, 493, 525, 568, 649
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	8 cut(s)	238, 411, 416, 458, 494, 526, 569, 650
Bme1390I	CCNGG	2 cut(s)	357, 633
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	2 cut(s)	357, 633
BmsI	GCATC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaHI	GRCGYC	3 cut(s)	401, 588, 623
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	7 cut(s)	362, 535, 577, 604, 701, 702, 745
Bse118I	RCCGGY	2 cut(s)	394, 535
BseBI	CCWGG	2 cut(s)	357, 633
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	357, 772, 778
BseLI	CCNNNNNNNGG	7 cut(s)	362, 535, 577, 604, 701, 702, 745
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	430, 541
BseXI	GCAGC	7 cut(s)	223, 401, 421, 443, 479, 511, 660
Bsh1236I	CGCG	3 cut(s)	324, 617, 722
BshFI	GGCC	4 cut(s)	194, 485, 597, 608
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	7 cut(s)	83, 345, 395, 482, 536, 594, 605
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	7 cut(s)	362, 535, 577, 604, 701, 702, 745
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	4 cut(s)	194, 485, 597, 608
BsoBI	CYCGRG	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	8 cut(s)	335, 367, 568, 615, 639, 658, 676, 722
BspANI	GGCC	4 cut(s)	194, 485, 597, 608
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	3 cut(s)	324, 617, 722
BspLI	GGNNCC	1 cut(s)	637
BspMAI	CTGCAG	4 cut(s)	381, 497, 514, 650
BspMI	ACCTGC	5 cut(s)	241, 433, 503, 511, 653
BsrFI	RCCGGY	2 cut(s)	394, 535
BssAI	RCCGGY	2 cut(s)	394, 535
BssECI	CCNNGG	1 cut(s)	356
BssNI	GRCGYC	3 cut(s)	401, 588, 623
Bst2UI	CCWGG	2 cut(s)	357, 633
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	3 cut(s)	401, 588, 623
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	396, 541, 610
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	357, 772, 778
BstFNI	CGCG	3 cut(s)	324, 617, 722
BstH2I	RGCGCY	2 cut(s)	415, 654
BstHHI	GCGC	4 cut(s)	324, 414, 619, 653
BstMWI	GCNNNNNNNGC	7 cut(s)	236, 242, 321, 341, 614, 657, 760
BstNI	CCWGG	2 cut(s)	357, 633
BstSCI	CCNGG	2 cut(s)	355, 631
BstSFI	CTRYAG	5 cut(s)	225, 377, 493, 510, 646
BstUI	CGCG	3 cut(s)	324, 617, 722
BstV1I	GCAGC	7 cut(s)	223, 401, 421, 443, 479, 511, 660
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	4 cut(s)	194, 485, 597, 608
BtsCI	GGATG	3 cut(s)	357, 772, 778
BveI	ACCTGC	5 cut(s)	241, 433, 503, 511, 653
Cac8I	GCNNGC	3 cut(s)	396, 541, 610
CaiI	CAGNNNCTG	2 cut(s)	233, 425
CfoI	GCGC	4 cut(s)	324, 414, 619, 653
Cfr10I	RCCGGY	2 cut(s)	394, 535
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	20
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	141
EaeI	YGGCCR	2 cut(s)	192, 606
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	2 cut(s)	350, 382
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	355, 631
EcoRV	GATATC	1 cut(s)	157
FaiI	YATR	7 cut(s)	75, 77, 278, 283, 287, 305, 796
FaqI	GGGAC	1 cut(s)	599
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	8 cut(s)	237, 410, 415, 457, 493, 525, 568, 649
FokI	GGATG	3 cut(s)	364, 765, 779
Fsp4HI	GCNGC	8 cut(s)	237, 410, 415, 457, 493, 525, 568, 649
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	4 cut(s)	323, 413, 618, 652
GluI	GCNGC	8 cut(s)	237, 410, 415, 457, 493, 525, 568, 649
HaeII	RGCGCY	2 cut(s)	415, 654
HaeIII	GGCC	4 cut(s)	194, 485, 597, 608
HapII	CCGG	7 cut(s)	83, 345, 395, 482, 536, 594, 605
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	4 cut(s)	324, 414, 619, 653
Hin1I	GRCGYC	3 cut(s)	401, 588, 623
Hin6I	GCGC	4 cut(s)	322, 412, 617, 651
HinP1I	GCGC	4 cut(s)	322, 412, 617, 651
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	7 cut(s)	83, 345, 395, 482, 536, 594, 605
HphI	GGTGA	3 cut(s)	100, 527, 737
Hpy166II	GTNNAC	3 cut(s)	62, 108, 254
Hpy188I	TCNGA	4 cut(s)	132, 435, 445, 556
Hpy188III	TCNNGA	3 cut(s)	8, 44, 782
Hpy8I	GTNNAC	3 cut(s)	62, 108, 254
Hpy99I	CGWCG	6 cut(s)	329, 403, 406, 625, 628, 631
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	401, 623
HpyCH4V	TGCA	8 cut(s)	212, 379, 409, 428, 495, 506, 512, 648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	236, 242, 321, 341, 614, 657, 760
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	401, 623
Hsp92I	GRCGYC	3 cut(s)	401, 588, 623
HspAI	GCGC	4 cut(s)	322, 412, 617, 651
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	85, 617
Lsp1109I	GCAGC	7 cut(s)	223, 401, 421, 443, 479, 511, 660
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	401, 623
MboII	GAAGA	3 cut(s)	587, 722, 782
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	6 cut(s)	14, 54, 146, 181, 196, 247
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	155, 468, 579
Mox20I	TGGCCA	1 cut(s)	194
MreI	CGCCGGCG	1 cut(s)	394
MroNI	GCCGGC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	186, 756
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	7 cut(s)	83, 345, 395, 482, 536, 594, 605
MspR9I	CCNGG	2 cut(s)	357, 633
MvaI	CCWGG	2 cut(s)	357, 633
MvnI	CGCG	3 cut(s)	324, 617, 722
MwoI	GCNNNNNNNGC	7 cut(s)	236, 242, 321, 341, 614, 657, 760
NaeI	GCCGGC	1 cut(s)	396
NgoMIV	GCCGGC	1 cut(s)	394
NlaIV	GGNNCC	1 cut(s)	637
PaqCI	CACCTGC	2 cut(s)	241, 503
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PdiI	GCCGGC	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	8 cut(s)	238, 411, 416, 458, 494, 526, 569, 650
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	355, 631
PspGI	CCWGG	2 cut(s)	355, 631
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	1 cut(s)	165
PstI	CTGCAG	4 cut(s)	381, 497, 514, 650
PstNI	CAGNNNCTG	2 cut(s)	233, 425
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	186, 756
SatI	GCNGC	8 cut(s)	237, 410, 415, 457, 493, 525, 568, 649
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	357, 633
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	5 cut(s)	225, 377, 493, 510, 646
SgrAI	CRCCGGYG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	165
Sse9I	AATT	6 cut(s)	14, 54, 146, 181, 196, 247
SsiI	CCGC	8 cut(s)	335, 367, 568, 615, 639, 658, 676, 722
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	355, 631
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	404, 626
TaqI	TCGA	2 cut(s)	450, 561
TasI	AATT	6 cut(s)	14, 54, 146, 181, 196, 247
TauI	GCSGC	1 cut(s)	570
Tru1I	TTAA	2 cut(s)	186, 756
Tru9I	TTAA	2 cut(s)	186, 756
TseI	GCWGC	7 cut(s)	236, 409, 414, 456, 492, 524, 648
TspDTI	ATGAA	1 cut(s)	783
TspGWI	ACGGA	2 cut(s)	178, 342
Tth111I	GACNNNGTC	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XspI	CTAG	1 cut(s)	242
ZraI	GACGTC	2 cut(s)	402, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.