Rroxscaffold_5G00367550

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0021624
Physical Location & Seq
Forward (+)
49358191 .. 49365512
7322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367550.1

Sequence Viewer

Length: 1215 bp
ATGTTTGAATGGATGCGAGTTGATCAATGTTTGGCGAAGCAAGAGGCATTGCAATCTCTTCATAATGTTATCACCTCAAAGACGTCTAGAGGATGGCAAAACCGAGTCACCGGAAACGCCGCACTTGCCGGCGACCCGCGTTCCGGATCGAATGAACCCAATCGCGGGGCGTTCGCGTTCCCGATCGCTATGTTTAGCGATCCCATGGTTGGCGAACTCACGCATATCGAGCCCATTCCAATAATCCAATCACAAGTTCACAACTCAAAGGAGAAAGATGGTGTCACCGGAATCTGGAAAATCCACACCGATCTAAGGAAGCCGAAGTCCACCCCACCCCCGCCGTCCGTCACATTCTCATCGCCGTCGTCGGTTTACACTTCTTCCAACAAGCCGCCCGCATCGATGCCGTCTCGTTTTCACCGTCCCCCGTTTCAATCAAAATTGGAGTTATTGAAAGTTGCAAAAACAAGATTTGCATCGCATTATATCTTGTTGAAGCGACTTATTGATTGCAAAGAAGCACTAGCAAGTACGGTAATTCTTCAAAAATGGAAAGATTGGGTGAAGACTTTAGACCCCGAGAAAAGAAAACTTGGGGAGAATATAACACAAGTCGTGTTGGCAGACAACTTTTGGGATGATGTGTTGGCTATAGATGGACAATATGCTTGGAGAAATAAGAGAAGTTATGAGTTCTGGGCCGCACTCGATTATCTTCCACAAGTCGAAAAGATTGTGCTCGAAAGGTGGCAAAAAATGAATTACCCTATCCATTGTGTTGGATATGCCCCGACGCCAAGATTTTATGAAAGAGAATATCTCGGTAAAAAAGCACCAGGAGGATTCACTCGAAAGAGCCCTAATCAAGATATAGAAGTGATTACAAGCCTCATGAAAGCATTTGATACGATATCGAAGATCAAGAAGAAGCAGAGTTATTACCGAAAAGGTATTTTTGCTACACAAGCTGTCCAGACAGGTGCTGTAACTATGGATGCCATTGATTGGTGGTCAACATATGGTTCACAAGTTCCAGAATTAGCAGAAGTTGCACAAAAGCTTTGCGTTGAGTTGCGCAAGGGTATTTTTTCCAAGGCTGGTCTGATTAAGTACCTCAATATATGTCAACAAGTAAATGTCAGCTCCTTGGAAGAGGTCATCAATTTGAGCAGGCTGGTACTCCGGAAGAAGCAGTTAATGTTGATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

404

Amino Acids

46.03

Weight (kDa)

9.6

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021624)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8240407.1_g000001 Rmu_sc0000135.1_g000003 Rmu_sc0001075.1_g000032 Rmu_sc0008191.1_g000002
rosa_roxburghii Rroxscaffold_5G00367550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 1079
AccB7I CCANNNNNTGG 1 cut(s) 1008
AccII CGCG 3 cut(s) 139, 165, 176
AccIII TCCGGA 2 cut(s) 143, 1185
AciI CCGC 7 cut(s) 120, 137, 165, 341, 395, 399, 705
AclWI GGATC 2 cut(s) 154, 194
AcyI GRCGYC 2 cut(s) 83, 797
AfaI GTAC 3 cut(s) 535, 1115, 1182
AfiI CCNNNNNNNGG 7 cut(s) 143, 164, 165, 209, 294, 315, 1008
AgsI TTSAA 5 cut(s) 8, 437, 457, 499, 548
AjnI CCWGG 1 cut(s) 838
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 3 cut(s) 971, 1063, 1146
AluI AGCT 3 cut(s) 971, 1063, 1146
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 2 cut(s) 154, 194
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 581
Aor13HI TCCGGA 2 cut(s) 143, 1185
AoxI GGCC 1 cut(s) 702
AspLEI GCGC 1 cut(s) 1080
AspS9I GGNCC 1 cut(s) 702
AsuHPI GGTGA 5 cut(s) 64, 100, 277, 413, 577
AvaI CYCGRG 1 cut(s) 581
BanII GRGCYC 2 cut(s) 234, 863
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 744
BccI CCATC 3 cut(s) 87, 272, 653
BceAI ACGGC 3 cut(s) 328, 349, 394
BciT130I CCWGG 1 cut(s) 840
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 2 cut(s) 87, 527
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 3 cut(s) 120, 395, 705
BlsI GCNGC 3 cut(s) 121, 396, 706
Bme1390I CCNGG 1 cut(s) 840
BmeT110I CYCGRG 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 702
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 5 cut(s) 3, 396, 410, 488, 988
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 807, 839
Bsa29I ATCGAT 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 478
BsaHI GRCGYC 2 cut(s) 83, 797
BsaJI CCNNGG 3 cut(s) 204, 1095, 1149
BsaWI WCCGGW 4 cut(s) 110, 143, 287, 1185
Bsc4I CCNNNNNNNGG 7 cut(s) 143, 164, 165, 209, 294, 315, 1008
Bse118I RCCGGY 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 478
BseAI TCCGGA 2 cut(s) 143, 1185
BseBI CCWGG 1 cut(s) 840
BseCI ATCGAT 1 cut(s) 404
BseDI CCNNGG 3 cut(s) 204, 1095, 1149
BseGI GGATG 4 cut(s) 18, 98, 646, 1003
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 7 cut(s) 143, 164, 165, 209, 294, 315, 1008
BseMI GCAATG 1 cut(s) 47
Bsh1236I CGCG 3 cut(s) 139, 165, 176
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 704
BshVI ATCGAT 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 744
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 5 cut(s) 111, 129, 144, 288, 1186
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 7 cut(s) 143, 164, 165, 209, 294, 315, 1008
BsmAI GTCTC 1 cut(s) 417
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 704
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 3 cut(s) 234, 744, 863
Bsp13I TCCGGA 2 cut(s) 143, 1185
Bsp143I GATC 6 cut(s) 22, 146, 183, 199, 310, 921
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 7 cut(s) 120, 137, 165, 341, 395, 399, 705
BspANI GGCC 1 cut(s) 704
BspDI ATCGAT 1 cut(s) 404
BspEI TCCGGA 2 cut(s) 143, 1185
BspFNI CGCG 3 cut(s) 139, 165, 176
BspHI TCATGA 1 cut(s) 894
BspPI GGATC 2 cut(s) 154, 194
BsrDI GCAATG 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 204, 1095, 1149
BssMI GATC 6 cut(s) 22, 146, 183, 199, 310, 921
BssNI GRCGYC 2 cut(s) 83, 797
BssT1I CCWWGG 3 cut(s) 204, 1095, 1149
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 425, 538
Bst6I CTCTTC 2 cut(s) 63, 1149
BstACI GRCGYC 2 cut(s) 83, 797
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstC8I GCNNGC 3 cut(s) 130, 399, 1175
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 4 cut(s) 18, 98, 646, 1003
BstFNI CGCG 3 cut(s) 139, 165, 176
BstHHI GCGC 1 cut(s) 1080
BstKTI GATC 6 cut(s) 25, 149, 186, 202, 313, 924
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 6 cut(s) 22, 146, 183, 199, 310, 921
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 4 cut(s) 125, 229, 968, 1052
BstNI CCWGG 1 cut(s) 840
BstSCI CCNGG 1 cut(s) 838
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 3 cut(s) 139, 165, 176
BstV2I GAAGAC 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 782
Bsu15I ATCGAT 1 cut(s) 404
BsuRI GGCC 1 cut(s) 704
BsuTUI ATCGAT 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 2 cut(s) 345, 465
BtsCI GGATG 4 cut(s) 18, 98, 646, 1003
Cac8I GCNNGC 3 cut(s) 130, 399, 1175
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 1080
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 702
ClaI ATCGAT 1 cut(s) 404
CseI GACGC 1 cut(s) 805
Csp6I GTAC 3 cut(s) 534, 1114, 1181
CviAII CATG 2 cut(s) 205, 895
CviQI GTAC 3 cut(s) 534, 1114, 1181
DdeI CTNAG 1 cut(s) 314
DpnI GATC 6 cut(s) 24, 148, 185, 201, 312, 923
DpnII GATC 6 cut(s) 22, 146, 183, 199, 310, 921
Eam1104I CTCTTC 2 cut(s) 63, 1149
EarI CTCTTC 2 cut(s) 63, 1149
Eco130I CCWWGG 3 cut(s) 204, 1095, 1149
Eco24I GRGCYC 2 cut(s) 234, 863
Eco32I GATATC 1 cut(s) 915
Eco88I CYCGRG 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 915
EcoT14I CCWWGG 3 cut(s) 204, 1095, 1149
EcoT38I GRGCYC 2 cut(s) 234, 863
ErhI CCWWGG 3 cut(s) 204, 1095, 1149
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 2 cut(s) 208, 898
FaqI GGGAC 1 cut(s) 411
FatI CATG 2 cut(s) 204, 894
FauI CCCGC 4 cut(s) 144, 158, 348, 406
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 120, 395, 705
FokI GGATG 4 cut(s) 25, 105, 653, 1010
FriOI GRGCYC 2 cut(s) 234, 863
Fsp4HI GCNGC 3 cut(s) 120, 395, 705
FspBI CTAG 2 cut(s) 87, 527
FspI TGCGCA 1 cut(s) 1079
GlaI GCGC 1 cut(s) 1079
GluI GCNGC 3 cut(s) 120, 395, 705
HaeIII GGCC 1 cut(s) 704
HapII CCGG 5 cut(s) 111, 129, 144, 288, 1186
HgaI GACGC 1 cut(s) 805
HhaI GCGC 1 cut(s) 1080
Hin1I GRCGYC 2 cut(s) 83, 797
Hin1II CATG 2 cut(s) 208, 898
Hin6I GCGC 1 cut(s) 1078
HinP1I GCGC 1 cut(s) 1078
HincII GTYRAC 2 cut(s) 1017, 1130
HindII GTYRAC 2 cut(s) 1017, 1130
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 3 cut(s) 105, 291, 846
HpaII CCGG 5 cut(s) 111, 129, 144, 288, 1186
HphI GGTGA 5 cut(s) 64, 100, 277, 413, 577
Hpy166II GTNNAC 6 cut(s) 259, 330, 376, 1017, 1028, 1130
Hpy188I TCNGA 1 cut(s) 1107
Hpy8I GTNNAC 6 cut(s) 259, 330, 376, 1017, 1028, 1130
Hpy99I CGWCG 3 cut(s) 370, 373, 799
HpyCH4III ACNGT 2 cut(s) 425, 538
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 5 cut(s) 52, 464, 479, 516, 1055
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 229, 968, 1052
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 2 cut(s) 83, 797
Hsp92II CATG 2 cut(s) 208, 898
HspAI GCGC 1 cut(s) 1078
Kpn2I TCCGGA 2 cut(s) 143, 1185
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 6 cut(s) 22, 146, 183, 199, 310, 921
LmnI GCTCC 1 cut(s) 1151
LweI GCATC 5 cut(s) 3, 396, 410, 488, 988
MaeI CTAG 2 cut(s) 87, 527
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 4 cut(s) 106, 283, 349, 988
MalI GATC 6 cut(s) 24, 148, 185, 201, 312, 923
MboI GATC 6 cut(s) 22, 146, 183, 199, 310, 921
MboII GAAGA 9 cut(s) 50, 375, 536, 580, 710, 931, 940, 1166, 1201
MhlI GDGCHC 3 cut(s) 234, 744, 863
MluCI AATT 5 cut(s) 443, 540, 763, 1040, 1165
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 411, 763
MnlI CCTC 7 cut(s) 37, 83, 85, 836, 902, 1127, 1150
MroI TCCGGA 2 cut(s) 143, 1185
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 1110, 1199
MspI CCGG 5 cut(s) 111, 129, 144, 288, 1186
MspR9I CCNGG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 3 cut(s) 139, 165, 176
MwoI GCNNNNNNNGC 4 cut(s) 125, 229, 968, 1052
NaeI GCCGGC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 204
NdeI CATATG 1 cut(s) 1021
NdeII GATC 6 cut(s) 22, 146, 183, 199, 310, 921
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 208, 898
NmuCI GTSAC 3 cut(s) 106, 283, 349
NsbI TGCGCA 1 cut(s) 1079
PagI TCATGA 1 cut(s) 894
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 291, 846
PflMI CCANNNNNTGG 1 cut(s) 1008
PkrI GCNGC 3 cut(s) 121, 396, 706
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspPI GGNCC 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 986
PvuI CGATCG 1 cut(s) 186
RsaI GTAC 3 cut(s) 535, 1115, 1182
RsaNI GTAC 3 cut(s) 534, 1114, 1181
SaqAI TTAA 2 cut(s) 1110, 1199
SatI GCNGC 3 cut(s) 120, 395, 705
Sau3AI GATC 6 cut(s) 22, 146, 183, 199, 310, 921
Sau96I GGNCC 1 cut(s) 702
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 3 cut(s) 234, 744, 863
SfaNI GCATC 5 cut(s) 3, 396, 410, 488, 988
SfcI CTRYAG 1 cut(s) 654
Sse9I AATT 5 cut(s) 443, 540, 763, 1040, 1165
SsiI CCGC 7 cut(s) 120, 137, 165, 341, 395, 399, 705
SspMI CTAG 2 cut(s) 87, 527
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 3 cut(s) 204, 1095, 1149
TaaI ACNGT 2 cut(s) 425, 538
TaiI ACGT 1 cut(s) 86
TaqI TCGA 8 cut(s) 149, 228, 404, 711, 729, 744, 853, 917
TasI AATT 5 cut(s) 443, 540, 763, 1040, 1165
TauI GCSGC 3 cut(s) 122, 397, 707
TfiI GAWTC 2 cut(s) 291, 846
Tru1I TTAA 2 cut(s) 1110, 1199
Tru9I TTAA 2 cut(s) 1110, 1199
TseFI GTSAC 3 cut(s) 106, 283, 349
Tsp45I GTSAC 3 cut(s) 106, 283, 349
TspDTI ATGAA 5 cut(s) 50, 168, 776, 825, 911
TspGWI ACGGA 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 1008
XbaI TCTAGA 1 cut(s) 86
XspI CTAG 2 cut(s) 87, 527
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.