Rmu_co8250401.1_g000001

Protein SCAI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8250401.1
OG0023084
Physical Location & Seq
Forward (+)
575 .. 789
215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8250401.1_g000001.1.cds

Sequence Viewer

Length: 215 bp
atgtcagataacgacgtagtttccggcacgttccgggcgctggtggagggcgcggaccggaagttcgcgagggtccgggacgtgccggcgtacgggcgcgtgcacaaccagcactactttcacaaggtgttcaaggcttacatgcggctgtggaagtaccagcaggagaaccgggccaagctcgtcgaggccggtctgaaccggtgggaaatcgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAI

Protein Analysis

72

Amino Acids

8.53

Weight (kDa)

9.89

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023084)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250401.1_g000001 Rmu_co8490441.1_g000001 Rmu_sc0002345.1_g000031
rosa_roxburghii Rroxscaffold_6G00408780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 53, 68, 99
AciI CCGC 2 cut(s) 53, 145
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 92, 158
AfiI CCNNNNNNNGG 2 cut(s) 40, 92
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 133
AjiI CACGTC 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 101
AoxI GGCC 2 cut(s) 174, 189
ApaLI GTGCAC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AsiGI ACCGGT 1 cut(s) 201
AspLEI GCGC 3 cut(s) 40, 53, 99
AspS9I GGNCC 3 cut(s) 55, 73, 174
AsuC2I CCSGG 3 cut(s) 35, 77, 173
AvaII GGWCC 2 cut(s) 55, 73
BaeGI GKGCMC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BcnI CCSGG 3 cut(s) 35, 77, 173
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 3 cut(s) 35, 77, 173
Bme18I GGWCC 2 cut(s) 55, 73
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 55, 73, 174
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 3 cut(s) 35, 77, 173
BpuMI CCSGG 3 cut(s) 35, 77, 173
BsaWI WCCGGW 2 cut(s) 57, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 92
Bse118I RCCGGY 3 cut(s) 85, 191, 201
BseLI CCNNNNNNNGG 2 cut(s) 40, 92
BseSI GKGCMC 1 cut(s) 105
Bsh1236I CGCG 3 cut(s) 53, 68, 99
BshFI GGCC 2 cut(s) 176, 191
BshTI ACCGGT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 8 cut(s) 24, 34, 58, 76, 86, 172, 192, 202
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 40, 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 2 cut(s) 176, 191
Bsp1286I GDGCHC 1 cut(s) 105
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 2 cut(s) 53, 145
BspANI GGCC 2 cut(s) 176, 191
BspFNI CGCG 3 cut(s) 53, 68, 99
BspLI GGNNCC 1 cut(s) 74
BsrFI RCCGGY 3 cut(s) 85, 191, 201
BssAI RCCGGY 3 cut(s) 85, 191, 201
BstC8I GCNNGC 2 cut(s) 87, 101
BstFNI CGCG 3 cut(s) 53, 68, 99
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 3 cut(s) 40, 53, 99
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 33, 75, 171
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 3 cut(s) 53, 68, 99
BsuRI GGCC 2 cut(s) 176, 191
BtrI CACGTC 1 cut(s) 82
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 87, 101
CfoI GCGC 3 cut(s) 40, 53, 99
Cfr10I RCCGGY 3 cut(s) 85, 191, 201
Cfr13I GGNCC 3 cut(s) 55, 73, 174
CpoI CGGWCCG 1 cut(s) 55
Csp6I GTAC 2 cut(s) 91, 157
CspAI ACCGGT 1 cut(s) 201
CspI CGGWCCG 1 cut(s) 55
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 137, 148, 176, 181, 191
CviKI_1 RGCY 5 cut(s) 137, 148, 176, 181, 191
CviQI GTAC 2 cut(s) 91, 157
DraIII CACNNNGTG 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 55, 73
FaeI CATG 1 cut(s) 145
FaiI YATR 1 cut(s) 143
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 3 cut(s) 39, 52, 98
GluI GCNGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 2 cut(s) 176, 191
HapII CCGG 8 cut(s) 24, 34, 58, 76, 86, 172, 192, 202
HhaI GCGC 3 cut(s) 40, 53, 99
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 3 cut(s) 38, 51, 97
HinP1I GCGC 3 cut(s) 38, 51, 97
HpaII CCGG 8 cut(s) 24, 34, 58, 76, 86, 172, 192, 202
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 7, 198
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 2 cut(s) 17, 188
HpyCH4IV ACGT 3 cut(s) 15, 29, 81
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpySE526I ACGT 3 cut(s) 15, 29, 81
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 3 cut(s) 38, 51, 97
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
MaeII ACGT 3 cut(s) 15, 29, 81
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 3 cut(s) 40, 63, 181
MroNI GCCGGC 1 cut(s) 85
MspI CCGG 8 cut(s) 24, 34, 58, 76, 86, 172, 192, 202
MspR9I CCNGG 3 cut(s) 35, 77, 173
MvnI CGCG 3 cut(s) 53, 68, 99
MwoI GCNNNNNNNGC 1 cut(s) 109
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 3 cut(s) 35, 77, 173
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 74
NruI TCGCGA 1 cut(s) 68
NspI RCATGY 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 87
Pfl23II CGTACG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 75
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 1 cut(s) 147
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 3 cut(s) 55, 73, 174
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 2 cut(s) 92, 158
RsaNI GTAC 2 cut(s) 91, 157
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SatI GCNGC 1 cut(s) 146
Sau96I GGNCC 3 cut(s) 55, 73, 174
ScrFI CCNGG 3 cut(s) 35, 77, 173
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 18, 32, 84, 129, 183
SinI GGWCC 2 cut(s) 55, 73
SsiI CCGC 2 cut(s) 53, 145
StyD4I CCNGG 3 cut(s) 33, 75, 171
TaiI ACGT 3 cut(s) 18, 32, 84
TaqI TCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 148
VneI GTGCAC 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 55, 73
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.