Rmu_sc0002345.1_g000031

Protein SCAI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002345.1
OG0023084
Physical Location & Seq
Reverse (-)
104140 .. 104512
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002345.1_g000031.1.cds

Sequence Viewer

Length: 279 bp
atggttaatttcgaatcttcgtctctgttcgggcaagagtacgacgcctacttctacaacgccttcaaggtctacatgcagctctggaagttccataaagaaaaccgtccaaaagttgtcgaggccggtctccggcgatcgaagatagccgatcgttgctgtggtaagactagagatcgacgaagggagcaggccggtgagcttgttttcgatgacgttgaggatctggatgaaaggcaagttggagatgctctggggaatctcgccggagaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAI

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

5.2

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023084)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250401.1_g000001 Rmu_co8490441.1_g000001 Rmu_sc0002345.1_g000031
rosa_roxburghii Rroxscaffold_6G00408780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AclWI GGATC 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 82, 202
AluI AGCT 2 cut(s) 82, 202
Alw26I GTCTC 2 cut(s) 27, 134
AlwI GGATC 1 cut(s) 231
AoxI GGCC 2 cut(s) 123, 192
ApeKI GCWGC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 12
BbvI GCAGC 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 27, 134
BfaI CTAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 1 cut(s) 238
Bpu14I TTCGAA 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 2 cut(s) 125, 194
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 91
Bsh1285I CGRYCG 2 cut(s) 140, 154
BshFI GGCC 2 cut(s) 125, 194
BsiEI CGRYCG 2 cut(s) 140, 154
BsiSI CCGG 4 cut(s) 126, 133, 195, 267
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 27, 134
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 2 cut(s) 125, 194
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 12
Bsp143I GATC 4 cut(s) 137, 151, 175, 223
BspANI GGCC 2 cut(s) 125, 194
BspPI GGATC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 2 cut(s) 125, 194
BssAI RCCGGY 2 cut(s) 125, 194
BssMI GATC 4 cut(s) 137, 151, 175, 223
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 192
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 4 cut(s) 140, 154, 178, 226
BstMAI GTCTC 2 cut(s) 27, 134
BstMBI GATC 4 cut(s) 137, 151, 175, 223
BstMCI CGRYCG 2 cut(s) 140, 154
BstNSI RCATGY 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 2 cut(s) 125, 194
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 192
Cfr10I RCCGGY 2 cut(s) 125, 194
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 82, 125, 149, 194, 202
CviKI_1 RGCY 5 cut(s) 82, 125, 149, 194, 202
CviQI GTAC 1 cut(s) 40
DpnI GATC 4 cut(s) 139, 153, 177, 225
DpnII GATC 4 cut(s) 137, 151, 175, 223
Eco31I GGTCTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 77, 96
FatI CATG 1 cut(s) 75
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 2 cut(s) 125, 194
HapII CCGG 4 cut(s) 126, 133, 195, 267
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 79
HinfI GANTC 2 cut(s) 14, 259
HpaII CCGG 4 cut(s) 126, 133, 195, 267
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 85, 227
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 47, 183
HpyAV CCTTC 2 cut(s) 73, 177
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 4 cut(s) 137, 151, 175, 223
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 70, 139, 146, 176, 208, 212, 239
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 216
MalI GATC 4 cut(s) 139, 153, 177, 225
MboI GATC 4 cut(s) 137, 151, 175, 223
MboII GAAGA 2 cut(s) 9, 154
MflI RGATCY 1 cut(s) 223
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 115, 214, 265
MseI TTAA 1 cut(s) 6
MspI CCGG 4 cut(s) 126, 133, 195, 267
NdeII GATC 4 cut(s) 137, 151, 175, 223
NlaIII CATG 1 cut(s) 79
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 12
PfeI GAWTC 2 cut(s) 14, 259
PkrI GCNGC 1 cut(s) 81
Ple19I CGATCG 2 cut(s) 140, 154
PsuI RGATCY 1 cut(s) 223
PvuI CGATCG 2 cut(s) 140, 154
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 4 cut(s) 137, 151, 175, 223
SetI ASST 4 cut(s) 72, 84, 204, 219
SfaNI GCATC 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 219
TaqI TCGA 5 cut(s) 12, 120, 140, 178, 210
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 14, 259
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 246
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.