Rroxscaffold_6G00408780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0023084
Physical Location & Seq
Forward (+)
31283901 .. 31287081
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408780.1

Sequence Viewer

Length: 609 bp
ATGGCCATGACAAATTTCTTGGCTTCGGTCAAGATAGGGTGGGTCTTGCCTGGTCATAAGCCCACCGCTGGAAGCTTGTTTTTCTCCTCCATGGTCACCACATCAGCTTTTCCTAGCTGCAAGAGTACGACGCCTACTTCTACAACACCTTCAAGGTCTACACGCGGCTCCGGAAATTCCGAAAGAAAACCGTCCAAAGCTTGTCAAGGCGGTCTCCGGCGATCGAAGATAGGTGAGATTGCTTCGAGCGACTTTACTTGGGCGCAAGATACGAGGACCGGCGAGGCTAGCTATCTCGTCCGTACATTTTCTACGAGACAATTTCGAGCCGATCGTTGTTGTGGTAAGACCGGAGATCAACGAAGGGAGGAGGCCGGTGAGCTTGTTTTCGATGACGTTGAGGATCCGGAGGAAAGACAATTGGAGATGCTCCGGGAATCTCGCCGAGAGAGGACCGATCCGGTGTGGGGCGCGAGGAGGCGCTATTCGAGCGTGGTCGGATATGTCCGCGCACTCGAATCGAGATTTTGGATGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGAGAGAGATAGAGTGGTCGTGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.15

Weight (kDa)

9.73

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023084)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250401.1_g000001 Rmu_co8490441.1_g000001 Rmu_sc0002345.1_g000031
rosa_roxburghii Rroxscaffold_6G00408780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 158
AccII CGCG 3 cut(s) 165, 473, 510
AccIII TCCGGA 2 cut(s) 170, 406
AciI CCGC 4 cut(s) 66, 165, 210, 508
AclWI GGATC 3 cut(s) 398, 411, 452
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 13, 175
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 2 cut(s) 127, 304
AfiI CCNNNNNNNGG 2 cut(s) 68, 467
AgsI TTSAA 1 cut(s) 153
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 6 cut(s) 75, 107, 117, 200, 291, 382
AluI AGCT 6 cut(s) 75, 107, 117, 200, 291, 382
Alw26I GTCTC 2 cut(s) 218, 310
AlwI GGATC 3 cut(s) 398, 411, 452
Aor13HI TCCGGA 2 cut(s) 170, 406
AoxI GGCC 2 cut(s) 3, 372
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 13, 175
AspLEI GCGC 4 cut(s) 265, 473, 483, 512
AspS9I GGNCC 2 cut(s) 276, 453
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 3 cut(s) 88, 245, 389
AsuNHI GCTAGC 1 cut(s) 287
AvaII GGWCC 2 cut(s) 276, 453
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 526
BcgI CGANNNNNNTGC 2 cut(s) 501, 535
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 218, 310
BfaI CTAG 2 cut(s) 114, 288
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 2 cut(s) 118, 166
BlsI GCNGC 2 cut(s) 119, 167
Bme1390I CCNGG 2 cut(s) 51, 434
Bme18I GGWCC 2 cut(s) 276, 453
BmgT120I GGNCC 2 cut(s) 276, 453
BmiI GGNNCC 2 cut(s) 169, 405
BmrFI CCNGG 2 cut(s) 51, 434
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 4 cut(s) 170, 350, 406, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 467
Bse118I RCCGGY 2 cut(s) 278, 374
BseAI TCCGGA 2 cut(s) 170, 406
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 537, 609
BseLI CCNNNNNNNGG 2 cut(s) 68, 467
BseRI GAGGAG 5 cut(s) 76, 383, 490, 592, 595
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 3 cut(s) 165, 473, 510
Bsh1285I CGRYCG 2 cut(s) 224, 334
BshFI GGCC 2 cut(s) 5, 374
BsiEI CGRYCG 2 cut(s) 224, 334
BsiSI CCGG 8 cut(s) 171, 217, 279, 351, 375, 407, 433, 461
BslI CCNNNNNNNGG 2 cut(s) 68, 467
BsmAI GTCTC 2 cut(s) 218, 310
BsnI GGCC 2 cut(s) 5, 374
Bso31I GGTCTC 1 cut(s) 218
Bsp13I TCCGGA 2 cut(s) 170, 406
Bsp143I GATC 5 cut(s) 221, 331, 355, 403, 457
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 4 cut(s) 66, 165, 210, 508
BspANI GGCC 2 cut(s) 5, 374
BspEI TCCGGA 2 cut(s) 170, 406
BspFNI CGCG 3 cut(s) 165, 473, 510
BspLI GGNNCC 2 cut(s) 169, 405
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 3 cut(s) 398, 411, 452
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 2 cut(s) 278, 374
BssAI RCCGGY 2 cut(s) 278, 374
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 5 cut(s) 221, 331, 355, 403, 457
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 537, 609
BstFNI CGCG 3 cut(s) 165, 473, 510
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 4 cut(s) 265, 473, 483, 512
BstKTI GATC 5 cut(s) 224, 334, 358, 406, 460
BstMAI GTCTC 2 cut(s) 218, 310
BstMBI GATC 5 cut(s) 221, 331, 355, 403, 457
BstMCI CGRYCG 2 cut(s) 224, 334
BstMWI GCNNNNNNNGC 2 cut(s) 288, 489
BstNI CCWGG 1 cut(s) 51
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 49, 432
BstUI CGCG 3 cut(s) 165, 473, 510
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 5, 374
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 537, 609
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 4 cut(s) 265, 473, 483, 512
Cfr10I RCCGGY 2 cut(s) 278, 374
Cfr13I GGNCC 2 cut(s) 276, 453
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 126, 303
CviAII CATG 2 cut(s) 7, 91
CviQI GTAC 2 cut(s) 126, 303
DpnI GATC 5 cut(s) 223, 333, 357, 405, 459
DpnII GATC 5 cut(s) 221, 331, 355, 403, 457
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 276, 453
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 10, 94
FaiI YATR 4 cut(s) 8, 57, 92, 504
FatI CATG 2 cut(s) 6, 90
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 118, 166
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 2 cut(s) 118, 166
FspBI CTAG 2 cut(s) 114, 288
GlaI GCGC 4 cut(s) 264, 472, 482, 511
GluI GCNGC 2 cut(s) 118, 166
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 2 cut(s) 5, 374
HapII CCGG 8 cut(s) 171, 217, 279, 351, 375, 407, 433, 461
HgaI GACGC 1 cut(s) 139
HhaI GCGC 4 cut(s) 265, 473, 483, 512
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 2 cut(s) 10, 94
Hin6I GCGC 4 cut(s) 263, 471, 481, 510
HinP1I GCGC 4 cut(s) 263, 471, 481, 510
HindIII AAGCTT 2 cut(s) 73, 198
HinfI GANTC 2 cut(s) 437, 518
HpaII CCGG 8 cut(s) 171, 217, 279, 351, 375, 407, 433, 461
HphI GGTGA 3 cut(s) 88, 245, 389
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 181, 500
Hpy188III TCNNGA 4 cut(s) 31, 171, 407, 522
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 159, 357
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 489
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 2 cut(s) 10, 94
HspAI GCGC 4 cut(s) 263, 471, 481, 510
Kpn2I TCCGGA 2 cut(s) 170, 406
Kzo9I GATC 5 cut(s) 221, 331, 355, 403, 457
LmnI GCTCC 2 cut(s) 173, 435
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 114, 288
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 94
MalI GATC 5 cut(s) 223, 333, 357, 405, 459
MboI GATC 5 cut(s) 221, 331, 355, 403, 457
MboII GAAGA 1 cut(s) 238
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 403
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 13, 175, 320, 419
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 478
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 170, 406
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 8 cut(s) 171, 217, 279, 351, 375, 407, 433, 461
MspR9I CCNGG 2 cut(s) 51, 434
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 3 cut(s) 165, 473, 510
MwoI GCNNNNNNNGC 2 cut(s) 288, 489
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 90
NdeII GATC 5 cut(s) 221, 331, 355, 403, 457
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 10, 94
NlaIV GGNNCC 2 cut(s) 169, 405
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 2 cut(s) 437, 518
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 2 cut(s) 119, 167
Ple19I CGATCG 2 cut(s) 224, 334
Psp6I CCWGG 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 169, 405
PspPI GGNCC 2 cut(s) 276, 453
PsuI RGATCY 1 cut(s) 403
PvuI CGATCG 2 cut(s) 224, 334
RsaI GTAC 2 cut(s) 127, 304
RsaNI GTAC 2 cut(s) 126, 303
SatI GCNGC 2 cut(s) 118, 166
Sau3AI GATC 5 cut(s) 221, 331, 355, 403, 457
Sau96I GGNCC 2 cut(s) 276, 453
ScrFI CCNGG 2 cut(s) 51, 434
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 2 cut(s) 276, 453
Sse9I AATT 4 cut(s) 13, 175, 320, 419
SsiI CCGC 4 cut(s) 66, 165, 210, 508
SspMI CTAG 2 cut(s) 114, 288
StyD4I CCNGG 2 cut(s) 49, 432
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 399
TaqI TCGA 7 cut(s) 224, 245, 325, 390, 488, 516, 521
TaqII GACCGA 2 cut(s) 16, 470
TasI AATT 4 cut(s) 13, 175, 320, 419
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 437, 518
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 276, 453
XapI RAATTY 2 cut(s) 13, 175
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 2 cut(s) 114, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.