Rmu_co8490441.1_g000001

Protein SCAI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8490441.1
OG0023084
Physical Location & Seq
Reverse (-)
1 .. 539
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8490441.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
atgcaagtgcagcaaaaccctagcatcccggtcagcgaagtctactggtctcttctccacaaagccgataagaaattctccaaaatacgagagctcccctattaccaccgcaacaggcatgagtacgacgcctacttctacaaggtcttcaaggtctacacgcagctctggaaattccagcaagaaaaccgccaaaagctcgtcgaggccggtctccggcgatcggagatcggcgagatcgcgtcgcgaatcgcgcagctttacttggggcagtacatgaggaccagcgaggctagctatctgtccgaggcgtacattttctacgaggcgattctgagcagagagtacttcaaggagggcatgtttcaggacctcaacttggccagcaagcagctcaggttcatttctaggtttcttatggtgtgcttgcttttgaatcgccgagagatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAI

Protein Analysis

150

Amino Acids

18.25

Weight (kDa)

9.47

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023084)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250401.1_g000001 Rmu_co8490441.1_g000001 Rmu_sc0002345.1_g000031
rosa_roxburghii Rroxscaffold_6G00408780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 42, 156
AccII CGCG 3 cut(s) 242, 247, 254
AciI CCGC 2 cut(s) 109, 190
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 2 cut(s) 74, 173
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 4 cut(s) 125, 275, 314, 347
AfiI CCNNNNNNNGG 3 cut(s) 216, 223, 379
AgsI TTSAA 3 cut(s) 151, 352, 436
AluBI AGCT 6 cut(s) 94, 166, 199, 259, 297, 394
AluI AGCT 6 cut(s) 94, 166, 199, 259, 297, 394
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 54, 218
AoxI GGCC 2 cut(s) 207, 381
ApeKI GCWGC 4 cut(s) 10, 163, 256, 391
ApoI RAATTY 2 cut(s) 74, 173
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 282, 370
AsuC2I CCSGG 1 cut(s) 29
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 2 cut(s) 282, 370
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 22, 175, 268, 403
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 54, 218
BfaI CTAG 3 cut(s) 21, 294, 408
BisI GCNGC 4 cut(s) 11, 164, 257, 392
BlsI GCNGC 4 cut(s) 12, 165, 258, 393
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 282, 370
BmgT120I GGNCC 2 cut(s) 282, 370
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 33
BmtI GCTAGC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 54, 218
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 223, 379
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 3 cut(s) 216, 223, 379
BseMII CTCAG 2 cut(s) 326, 409
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 4 cut(s) 22, 175, 268, 403
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 3 cut(s) 242, 247, 254
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 209, 383
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 29, 210, 217
BslI CCNNNNNNNGG 3 cut(s) 216, 223, 379
BsmAI GTCTC 2 cut(s) 54, 218
BsnI GGCC 2 cut(s) 209, 383
Bso31I GGTCTC 2 cut(s) 54, 218
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 221, 228, 237
Bsp68I TCGCGA 1 cut(s) 247
BspACI CCGC 2 cut(s) 109, 190
BspANI GGCC 2 cut(s) 209, 383
BspCNI CTCAG 2 cut(s) 327, 408
BspFNI CGCG 3 cut(s) 242, 247, 254
BspOI GCTAGC 1 cut(s) 297
BspTNI GGTCTC 2 cut(s) 54, 218
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 3 cut(s) 221, 228, 237
BssNI GRCGYC 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 295, 385, 389, 428
BstDEI CTNAG 2 cut(s) 335, 395
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 3 cut(s) 242, 247, 254
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 3 cut(s) 224, 231, 240
BstMAI GTCTC 2 cut(s) 54, 218
BstMBI GATC 3 cut(s) 221, 228, 237
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 10, 253, 294
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 3 cut(s) 242, 247, 254
BstV1I GCAGC 4 cut(s) 22, 175, 268, 403
BstV2I GAAGAC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 209, 383
BtsCI GGATG 1 cut(s) 24
BtuMI TCGCGA 1 cut(s) 247
Cac8I GCNNGC 4 cut(s) 295, 385, 389, 428
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 282, 370
CseI GACGC 2 cut(s) 137, 231
Csp6I GTAC 4 cut(s) 124, 274, 313, 346
CviAII CATG 3 cut(s) 119, 277, 361
CviQI GTAC 4 cut(s) 124, 274, 313, 346
DdeI CTNAG 2 cut(s) 335, 395
DpnI GATC 3 cut(s) 223, 230, 239
DpnII GATC 3 cut(s) 221, 228, 237
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 2 cut(s) 54, 218
Eco47I GGWCC 2 cut(s) 282, 370
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 3 cut(s) 122, 280, 364
FaiI YATR 4 cut(s) 120, 278, 362, 419
FatI CATG 3 cut(s) 118, 276, 360
FblI GTMKAC 2 cut(s) 42, 156
Fnu4HI GCNGC 4 cut(s) 11, 164, 257, 392
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 11, 164, 257, 392
FspBI CTAG 3 cut(s) 21, 294, 408
GlaI GCGC 1 cut(s) 255
GluI GCNGC 4 cut(s) 11, 164, 257, 392
HaeIII GGCC 2 cut(s) 209, 383
HapII CCGG 3 cut(s) 29, 210, 217
HgaI GACGC 2 cut(s) 137, 231
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 122, 280, 364
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 3 cut(s) 249, 331, 436
HpaII CCGG 3 cut(s) 29, 210, 217
Hpy166II GTNNAC 2 cut(s) 43, 157
Hpy188I TCNGA 3 cut(s) 226, 307, 336
Hpy188III TCNNGA 3 cut(s) 169, 246, 368
Hpy8I GTNNAC 2 cut(s) 43, 157
Hpy99I CGWCG 3 cut(s) 131, 206, 247
HpyCH4V TGCA 2 cut(s) 4, 10
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 253, 294
HpyF3I CTNAG 2 cut(s) 335, 395
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 122, 280, 364
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 221, 228, 237
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 4 cut(s) 22, 175, 268, 403
LweI GCATC 1 cut(s) 33
MaeI CTAG 3 cut(s) 21, 294, 408
MalI GATC 3 cut(s) 223, 230, 239
MboI GATC 3 cut(s) 221, 228, 237
MboII GAAGA 2 cut(s) 44, 139
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 74, 173
MluNI TGGCCA 1 cut(s) 383
MnlI CCTC 7 cut(s) 199, 273, 283, 301, 319, 349, 383
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 3 cut(s) 29, 210, 217
MspR9I CCNGG 1 cut(s) 29
MvnI CGCG 3 cut(s) 242, 247, 254
MwoI GCNNNNNNNGC 3 cut(s) 10, 253, 294
NciI CCSGG 1 cut(s) 29
NdeII GATC 3 cut(s) 221, 228, 237
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 3 cut(s) 122, 280, 364
NruI TCGCGA 1 cut(s) 247
NspI RCATGY 1 cut(s) 364
PfeI GAWTC 3 cut(s) 249, 331, 436
PkrI GCNGC 4 cut(s) 12, 165, 258, 393
Ple19I CGATCG 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 370
PspPI GGNCC 2 cut(s) 282, 370
PspPPI RGGWCCY 1 cut(s) 370
PvuI CGATCG 1 cut(s) 224
RruI TCGCGA 1 cut(s) 247
RsaI GTAC 4 cut(s) 125, 275, 314, 347
RsaNI GTAC 4 cut(s) 124, 274, 313, 346
SacI GAGCTC 1 cut(s) 96
SatI GCNGC 4 cut(s) 11, 164, 257, 392
Sau3AI GATC 3 cut(s) 221, 228, 237
Sau96I GGNCC 2 cut(s) 282, 370
ScaI AGTACT 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 2 cut(s) 282, 370
Sse9I AATT 2 cut(s) 74, 173
SsiI CCGC 2 cut(s) 109, 190
SspMI CTAG 3 cut(s) 21, 294, 408
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 27
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 74, 173
TatI WGTACW 2 cut(s) 273, 345
TfiI GAWTC 3 cut(s) 249, 331, 436
TseI GCWGC 4 cut(s) 10, 163, 256, 391
TspDTI ATGAA 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 282, 370
XapI RAATTY 2 cut(s) 74, 173
XceI RCATGY 1 cut(s) 364
XmiI GTMKAC 2 cut(s) 42, 156
XspI CTAG 3 cut(s) 21, 294, 408
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.