Rmu_co8270497.1_g000001

Haloacid dehalogenase-like hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8270497.1
Physical Location & Seq
Forward (+)
1 .. 555
555 bp
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UTR
Exon/CDS
Intron
Rmu_co8270497.1_g000001.1.cds

Sequence Viewer

Length: 320 bp
ggactctggctgccaaatatgaagagctggggggtgaagtgaaatggatgggcaagcctgataagattatctataaatcagccatggccttagttggtgtagaccctattgattctattgcagtgggcgattctcttcatcatgacatcaagggtgcaaatgcagctgcaatccaatcagttttaatcactggtggaatccatgcaactgaacttggacttggtagttttgcagacgtagcagatttaccttctgtgcaagctcttgcttccaaatatgatgcttacccatcgtatgtgttacctgcctttacatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.0

Weight (kDa)

4.86

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023061)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8270497.1_g000001 Rmu_sc0001196.1_g000011
rosa_samantha Rh2DG007000 Rh7BG425500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 27, 166, 262
AluI AGCT 3 cut(s) 27, 166, 262
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 10, 163, 166
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 2 cut(s) 153, 175
BccI CCATC 2 cut(s) 42, 297
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 3 cut(s) 11, 164, 167
BlsI GCNGC 3 cut(s) 12, 165, 168
BmsI GCATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 153, 175
BseYI CCCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 1 cut(s) 88
BspHI TCATGA 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 312
BspQI GCTCTTC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 17, 140
BstC8I GCNNGC 2 cut(s) 55, 260
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 163, 238
BstV1I GCAGC 2 cut(s) 153, 175
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 188
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 55, 260
CciI TCATGA 1 cut(s) 141
CviAII CATG 4 cut(s) 84, 142, 202, 314
CviJI RGCY 7 cut(s) 10, 27, 57, 82, 88, 166, 262
CviKI_1 RGCY 7 cut(s) 10, 27, 57, 82, 88, 166, 262
DdeI CTNAG 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 17, 140
EarI CTCTTC 2 cut(s) 17, 140
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 87, 145, 205, 317
FaiI YATR 8 cut(s) 20, 74, 85, 143, 203, 278, 296, 315
FatI CATG 4 cut(s) 83, 141, 201, 313
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 3 cut(s) 11, 164, 167
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 11, 164, 167
GluI GCNGC 3 cut(s) 11, 164, 167
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 4 cut(s) 87, 145, 205, 317
HinfI GANTC 4 cut(s) 3, 112, 130, 197
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 7 cut(s) 121, 157, 163, 169, 205, 232, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 238
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 4 cut(s) 87, 145, 205, 317
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 13, 71, 176
Lsp1109I GCAGC 2 cut(s) 153, 175
LweI GCATC 1 cut(s) 270
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 299
MboII GAAGA 2 cut(s) 34, 127
MseI TTAA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 163, 238
NcoI CCATGG 1 cut(s) 83
NlaIII CATG 4 cut(s) 87, 145, 205, 317
PagI TCATGA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 17
PfeI GAWTC 3 cut(s) 112, 130, 197
PkrI GCNGC 3 cut(s) 12, 165, 168
PspFI CCCAGC 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 184
SatI GCNGC 3 cut(s) 11, 164, 167
SetI ASST 6 cut(s) 29, 168, 239, 252, 264, 306
SfaNI GCATC 1 cut(s) 270
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 239
TfiI GAWTC 3 cut(s) 112, 130, 197
Tru1I TTAA 1 cut(s) 184
Tru9I TTAA 1 cut(s) 184
TscAI CASTG 2 cut(s) 128, 195
TseI GCWGC 3 cut(s) 10, 163, 166
TspDTI ATGAA 2 cut(s) 35, 127
TspRI CASTG 2 cut(s) 128, 195
XmiI GTMKAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.