Rmu_co8283871.1_g000001

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8283871.1
OG0012722
Physical Location & Seq
Reverse (-)
1 .. 734
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8283871.1_g000001.1.cds

Sequence Viewer

Length: 505 bp
atggaagttggaggaggaggaggaggaggagctcaatcagcagacacggtgatgtcagaggcgggccccacccagcagccaccggcacctcatcatcagatgggggcggaggccattccggcgacgctgagccacggcggcagattcatccagtacaacatcttcggcaacatcttcgaggtcaccgccaagtacaagccccccatcatgcccatcggcaaaggcgcatacggcatcgtttgctcggctttgaattcggatacgagcgagcacgtggccataaagaagattgcgaatgctttcgacaacaagatcgatgccaagaggactctgagggagatcaagctgctccggcatatggatcatgaaaacgttgttgcgattcgggacataatcccgccgccgcagaggagtgtgtttaacgatgtttacattgcctatgagctaatggacactgacctccatcagatcattcgatccaatcaagctctctctgaggagcatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005802 GO:0005856 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009403 GO:0009404 GO:0009409 GO:0009411 GO:0009416 GO:0009524 GO:0009555 GO:0009574 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009682 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009791 GO:0009856 GO:0009864 GO:0009867 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010150 GO:0010183 GO:0010224 GO:0010229 GO:0010468 GO:0012505 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0022414 GO:0022622 GO:0023014 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0035556 GO:0035670 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042430 GO:0042435 GO:0042493 GO:0042542 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0044706 GO:0045087 GO:0045088 GO:0045089 GO:0046217 GO:0046483 GO:0046677 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0050918 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0080135 GO:0080136 GO:0090567 GO:0090693 GO:0097305 GO:0098542 GO:0098791 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

168

Amino Acids

18.29

Weight (kDa)

6.03

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012722)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43790
fragaria_vesca FvH4_1g00480 FvH4_1g00480
malus_domestica MD02G1004000.v1.1 MD15G1147300.v1.1
prunus_persica Prupe.7G267300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084991
rosa_laevigata RLG00000015654
rosa_multiflora Rmu_co8283871.1_g000001 Rmu_sc0001196.1_g000005 Rmu_sc0008647.1_g000018
rosa_roxburghii Rroxscaffold_2G00155650
rosa_rugosa Rorug01G0457600
rosa_samantha Rh2AG005500 Rh2BG006500 Rh2CG007000 Rh2DG006900
rosa_wichuraiana Rw2G000520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 7 cut(s) 62, 107, 138, 186, 398, 401, 404
AclI AACGTT 1 cut(s) 372
AclWI GGATC 2 cut(s) 369, 471
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 253
AcvI CACGTG 1 cut(s) 274
AfaI GTAC 2 cut(s) 155, 194
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 4 cut(s) 32, 346, 445, 488
AluI AGCT 4 cut(s) 32, 346, 445, 488
Alw21I GWGCWC 2 cut(s) 34, 273
AlwI GGATC 2 cut(s) 369, 471
AoxI GGCC 3 cut(s) 64, 111, 276
ApaI GGGCCC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 76, 346
ApoI RAATTY 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 2 cut(s) 61, 175
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 278
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 2 cut(s) 34, 68
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 34, 273
BbvI GCAGC 2 cut(s) 88, 333
BccI CCATC 4 cut(s) 94, 212, 221, 471
BceAI ACGGC 2 cut(s) 151, 247
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciVI GTATCC 1 cut(s) 253
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 2 cut(s) 119, 138
BisI GCNGC 5 cut(s) 77, 139, 347, 401, 404
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 5 cut(s) 78, 140, 348, 402, 405
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 3 cut(s) 66, 67, 87
BmsI GCATC 2 cut(s) 243, 307
Bpu1102I GCTNAGC 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 3 cut(s) 119, 323, 486
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 7 cut(s) 27, 30, 33, 36, 39, 42, 424
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 88, 333
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 3 cut(s) 66, 113, 278
BshNI GGYRCC 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 34, 273
BsiSI CCGG 3 cut(s) 83, 119, 352
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 3 cut(s) 66, 113, 278
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 34, 68, 273
Bsp143I GATC 5 cut(s) 312, 339, 361, 468, 476
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 7 cut(s) 62, 107, 138, 186, 398, 401, 404
BspANI GGCC 3 cut(s) 66, 113, 278
BspCNI CTCAG 3 cut(s) 120, 324, 487
BspDI ATCGAT 1 cut(s) 315
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 66, 67, 87
BspPI GGATC 2 cut(s) 369, 471
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 5 cut(s) 312, 339, 361, 468, 476
Bst4CI ACNGT 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 64, 269
BstDEI CTNAG 3 cut(s) 128, 332, 495
BstDSI CCRYGG 1 cut(s) 133
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 5 cut(s) 315, 342, 364, 471, 479
BstMBI GATC 5 cut(s) 312, 339, 361, 468, 476
BstMWI GCNNNNNNNGC 6 cut(s) 38, 119, 138, 231, 240, 352
BstPI GGTNACC 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 88, 333
Bsu15I ATCGAT 1 cut(s) 315
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 3 cut(s) 66, 113, 278
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 64, 269
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 64, 65
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 154, 193
CviAII CATG 2 cut(s) 208, 365
CviQI GTAC 2 cut(s) 154, 193
DdeI CTNAG 3 cut(s) 128, 332, 495
DpnI GATC 5 cut(s) 314, 341, 363, 470, 478
DpnII GATC 5 cut(s) 312, 339, 361, 468, 476
EaeI YGGCCR 1 cut(s) 276
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 34, 68
Eco53kI GAGCTC 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 274
Eco91I GGTNACC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 34, 68
FaeI CATG 2 cut(s) 211, 368
FaiI YATR 8 cut(s) 209, 229, 281, 357, 359, 366, 392, 441
FaqI GGGAC 1 cut(s) 401
FatI CATG 2 cut(s) 207, 364
FauI CCCGC 2 cut(s) 55, 405
FauNDI CATATG 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 77, 139, 347, 401, 404
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 34, 68
Fsp4HI GCNGC 5 cut(s) 77, 139, 347, 401, 404
GlaI GCGC 1 cut(s) 226
GluI GCNGC 5 cut(s) 77, 139, 347, 401, 404
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 3 cut(s) 66, 113, 278
HapII CCGG 3 cut(s) 83, 119, 352
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 211, 368
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 144, 328, 382
HpaII CCGG 3 cut(s) 83, 119, 352
HphI GGTGA 2 cut(s) 61, 175
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 6 cut(s) 58, 99, 259, 333, 468, 496
Hpy188III TCNNGA 2 cut(s) 365, 386
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 273, 372
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 119, 138, 231, 240, 352
HpyF3I CTNAG 3 cut(s) 128, 332, 495
HpySE526I ACGT 2 cut(s) 273, 372
Hsp92II CATG 2 cut(s) 211, 368
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 312, 339, 361, 468, 476
LmnI GCTCC 3 cut(s) 29, 354, 499
LpnPI CCDG 5 cut(s) 86, 96, 132, 164, 365
Lsp1109I GCAGC 2 cut(s) 88, 333
LweI GCATC 2 cut(s) 243, 307
MaeII ACGT 2 cut(s) 273, 372
MaeIII GTNAC 1 cut(s) 181
MalI GATC 5 cut(s) 314, 341, 363, 470, 478
MboI GATC 5 cut(s) 312, 339, 361, 468, 476
MboII GAAGA 3 cut(s) 154, 166, 298
MhlI GDGCHC 3 cut(s) 34, 68, 273
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 1 cut(s) 322
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 299
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 3 cut(s) 83, 119, 352
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 6 cut(s) 38, 119, 138, 231, 240, 352
NdeI CATATG 1 cut(s) 357
NdeII GATC 5 cut(s) 312, 339, 361, 468, 476
NlaIII CATG 2 cut(s) 211, 368
NlaIV GGNNCC 3 cut(s) 66, 67, 87
NmeAIII GCCGAG 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 181
PagI TCATGA 1 cut(s) 364
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 144, 382
PkrI GCNGC 5 cut(s) 78, 140, 348, 402, 405
PleI GAGTC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 372
PspCI CACGTG 1 cut(s) 274
PspEI GGTNACC 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 3 cut(s) 66, 67, 87
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
RsaI GTAC 2 cut(s) 155, 194
RsaNI GTAC 2 cut(s) 154, 193
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 5 cut(s) 77, 139, 347, 401, 404
Sau3AI GATC 5 cut(s) 312, 339, 361, 468, 476
Sau96I GGNCC 2 cut(s) 64, 65
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 3 cut(s) 34, 68, 273
SetI ASST 9 cut(s) 34, 91, 183, 276, 348, 375, 447, 462, 490
SfaNI GCATC 2 cut(s) 243, 307
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 253
SsiI CCGC 7 cut(s) 62, 107, 138, 186, 398, 401, 404
SstI GAGCTC 1 cut(s) 34
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 276, 375
TaqI TCGA 4 cut(s) 177, 303, 315, 475
TasI AATT 1 cut(s) 253
TatI WGTACW 2 cut(s) 153, 192
TauI GCSGC 3 cut(s) 141, 403, 406
TfiI GAWTC 2 cut(s) 144, 382
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 76, 346
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 136, 381
TspRI CASTG 1 cut(s) 460
XapI RAATTY 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.