Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007953

Physical Location & Seq

Genomic Coordinates Reverse (-)

55206413 .. 55208920

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0457600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAATGGGACATGGAAATCGAGGAAATCGAGGCCGTGCTGGAGAAGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGCGCTCACTTCCTCGACTCCGTCAGGGCGCTGCGCAACTCGTCGGAGAAGAAGAAGAAGAGCGGCCTCCACCACGTCTACGGTGGAAACGACGCCGTGGCCGCGGCGGTGGAGGAGAAAGGGGCCGGGTTCGTGTTCGTGAAGGACTTCCGAGTCGAGCAGGACGATGAGTTAAGGGAGGCGAAGAGCCTCAATGCTATAAGGACCGCGCTCGAGAACCTGGAGGACCAGCTCGAGTTTTTCCATGTTCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAAAGCCGCATTGTTCTAGCACTGAGATTGTCTGAACACCATGGTAAGAAATACAAGGTTATTGAAGAAGCCCTCGCCTTTGTTGGAGATGTCTGTGATGCAAATGGCTTTGTTTCTCCCGAAAATCTCTATGATCCTCCAATCACTCCTGGTGACAACTTGGCGAACTCTGAAGGGAAGTCTAATATTATAATGAAAGTTCTTGTTTCAAGTGTAAATTTTGCCAAGAAGACTCTTAAGTTGGATAACATGGGTGGACTACTGGGAAATGCTGCTTTGGTGGCAGTCAGCATGATCGCATTGGTGCATATGCAGCAGGTAGCAGTTAAGGAGCATCCGCAGATGCTGGAAGATAAAATCTACGTGAACAGGAGTGCTAGAAAAACTTCCCGGATGGAGGGGGCCTCATCTACTGGTCGTCTCAGCAACTTGGATGTGCTATTAGCCAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

280

Amino Acids

31.1

Weight (kDa)

6.08

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10460
fragaria_vesca	FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490
malus_domestica	MD15G1148400.v1.1
prunus_persica	Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1
pyrus_communis	pycom15g13270
rosa_chinensis	RchiOBHm_Chr2g0085091
rosa_laevigata	RLG00000015655
rosa_multiflora	Rmu_sc0008647.1_g000015 Rmu_sc0008647.1_g000017
rosa_roxburghii	Rroxscaffold_2G00155640
rosa_rugosa	Rorug01G0457600 Rorug01G0457700
rosa_samantha	Rh2AG005900 Rh2BG006600 Rh2CG007300 Rh2DG007400
rosa_wichuraiana	Rw2G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc16I	TGCGCA	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	3 cut(s)	99, 200, 305
AciI	CCGC	9 cut(s)	97, 159, 198, 200, 203, 303, 352, 394, 725
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	2 cut(s)	78, 189
AfiI	CCNNNNNNNGG	1 cut(s)	784
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	2 cut(s)	452, 597
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	315, 535, 833
AluBI	AGCT	2 cut(s)	70, 328
AluI	AGCT	2 cut(s)	70, 328
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	2 cut(s)	308, 329
AoxI	GGCC	5 cut(s)	33, 160, 195, 219, 789
ApeKI	GCWGC	5 cut(s)	127, 349, 368, 659, 700
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	2 cut(s)	242, 772
AspLEI	GCGC	4 cut(s)	101, 127, 132, 307
AspS9I	GGNCC	5 cut(s)	55, 219, 300, 322, 789
AsuC2I	CCSGG	2 cut(s)	223, 778
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	2 cut(s)	308, 329
AvaII	GGWCC	3 cut(s)	55, 300, 322
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	5 cut(s)	114, 355, 361, 646, 712
BccI	CCATC	2 cut(s)	89, 775
BceAI	ACGGC	2 cut(s)	20, 176
BciT130I	CCWGG	3 cut(s)	317, 537, 835
BcnI	CCSGG	2 cut(s)	223, 778
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	2 cut(s)	404, 765
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	9 cut(s)	128, 160, 198, 201, 350, 369, 394, 660, 701
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	9 cut(s)	129, 161, 199, 202, 351, 370, 395, 661, 702
Bme1390I	CCNGG	5 cut(s)	223, 317, 537, 778, 835
Bme18I	GGWCC	3 cut(s)	55, 300, 322
BmeT110I	CYCGRG	2 cut(s)	308, 329
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	55, 219, 300, 322, 789
BmiI	GGNNCC	3 cut(s)	56, 220, 790
BmrFI	CCNGG	5 cut(s)	223, 317, 537, 778, 835
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	4 cut(s)	355, 475, 720, 730
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	776, 808
BpmI	CTGGAG	2 cut(s)	62, 338
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	223, 778
BsaAI	YACGTR	1 cut(s)	751
BsaHI	GRCGYC	2 cut(s)	78, 189
BsaJI	CCNNGG	4 cut(s)	192, 198, 427, 834
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	2 cut(s)	654, 805
BseBI	CCWGG	3 cut(s)	317, 537, 835
BseDI	CCNNGG	4 cut(s)	192, 198, 427, 834
BseGI	GGATG	4 cut(s)	81, 721, 786, 826
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMII	CTCAG	4 cut(s)	85, 348, 401, 823
BseNI	ACTGG	2 cut(s)	654, 805
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	5 cut(s)	114, 355, 361, 646, 712
Bsh1236I	CGCG	3 cut(s)	99, 200, 305
BshFI	GGCC	5 cut(s)	35, 162, 197, 221, 791
BsiHKCI	CYCGRG	2 cut(s)	308, 329
BsiSI	CCGG	2 cut(s)	222, 778
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	1 cut(s)	812
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	5 cut(s)	35, 162, 197, 221, 791
BsoBI	CYCGRG	2 cut(s)	308, 329
Bsp143I	GATC	2 cut(s)	520, 681
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	9 cut(s)	97, 159, 198, 200, 203, 303, 352, 394, 725
BspANI	GGCC	5 cut(s)	35, 162, 197, 221, 791
BspCNI	CTCAG	4 cut(s)	84, 349, 402, 822
BspFNI	CGCG	3 cut(s)	99, 200, 305
BspLI	GGNNCC	3 cut(s)	56, 220, 790
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	2 cut(s)	149, 275
BspTI	CTTAAG	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	654, 805
BssECI	CCNNGG	4 cut(s)	192, 198, 427, 834
BssMI	GATC	2 cut(s)	520, 681
BssNI	GRCGYC	2 cut(s)	78, 189
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	3 cut(s)	317, 537, 835
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	149, 275
BstACI	GRCGYC	2 cut(s)	78, 189
BstAFI	CTTAAG	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	751
BstC8I	GCNNGC	2 cut(s)	354, 379
BstDEI	CTNAG	4 cut(s)	71, 357, 410, 809
BstDSI	CCRYGG	3 cut(s)	192, 198, 427
BstF5I	GGATG	4 cut(s)	81, 721, 786, 826
BstFNI	CGCG	3 cut(s)	99, 200, 305
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	101, 127, 132, 307
BstKTI	GATC	2 cut(s)	523, 684
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	2 cut(s)	520, 681
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 374, 668, 700
BstNI	CCWGG	3 cut(s)	317, 537, 835
BstSCI	CCNGG	5 cut(s)	221, 315, 535, 776, 833
BstUI	CGCG	3 cut(s)	99, 200, 305
BstV1I	GCAGC	5 cut(s)	114, 355, 361, 646, 712
BstV2I	GAAGAC	1 cut(s)	623
BsuRI	GGCC	5 cut(s)	35, 162, 197, 221, 791
BtgI	CCRYGG	3 cut(s)	192, 198, 427
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	81, 721, 786, 826
BtsIMutI	CAGTG	1 cut(s)	407
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	354, 379
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	4 cut(s)	101, 127, 132, 307
Cfr13I	GGNCC	5 cut(s)	55, 219, 300, 322, 789
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	2 cut(s)	86, 197
CviAII	CATG	5 cut(s)	13, 341, 428, 637, 679
DdeI	CTNAG	4 cut(s)	71, 357, 410, 809
DpnI	GATC	2 cut(s)	522, 683
DpnII	GATC	2 cut(s)	520, 681
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	149, 275
EarI	CTCTTC	2 cut(s)	149, 275
Eco130I	CCWWGG	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	55, 300, 322
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	2 cut(s)	308, 329
EcoO109I	RGGNCCY	2 cut(s)	55, 789
EcoRII	CCWGG	3 cut(s)	315, 535, 833
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	5 cut(s)	16, 344, 431, 640, 682
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	5 cut(s)	12, 340, 427, 636, 678
FauI	CCCGC	2 cut(s)	104, 345
FauNDI	CATATG	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	9 cut(s)	128, 160, 198, 201, 350, 369, 394, 660, 701
FokI	GGATG	4 cut(s)	68, 708, 793, 833
Fsp4HI	GCNGC	9 cut(s)	128, 160, 198, 201, 350, 369, 394, 660, 701
FspBI	CTAG	2 cut(s)	404, 765
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	4 cut(s)	100, 126, 131, 306
GluI	GCNGC	9 cut(s)	128, 160, 198, 201, 350, 369, 394, 660, 701
GsuI	CTGGAG	2 cut(s)	62, 338
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	5 cut(s)	35, 162, 197, 221, 791
HapII	CCGG	2 cut(s)	222, 778
HgaI	GACGC	2 cut(s)	86, 197
HhaI	GCGC	4 cut(s)	101, 127, 132, 307
Hin1I	GRCGYC	2 cut(s)	78, 189
Hin1II	CATG	5 cut(s)	16, 344, 431, 640, 682
Hin6I	GCGC	4 cut(s)	99, 125, 130, 305
HinP1I	GCGC	4 cut(s)	99, 125, 130, 305
HinfI	GANTC	3 cut(s)	113, 249, 619
HpaII	CCGG	2 cut(s)	222, 778
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	175, 644, 754
Hpy188I	TCNGA	4 cut(s)	142, 248, 421, 559
Hpy188III	TCNNGA	3 cut(s)	235, 310, 506
Hpy8I	GTNNAC	3 cut(s)	175, 644, 754
Hpy99I	CGWCG	3 cut(s)	80, 142, 191
HpyAV	CCTTC	2 cut(s)	232, 554
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	171, 750
HpyCH4V	TGCA	5 cut(s)	371, 377, 488, 694, 700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 374, 668, 700
HpyF3I	CTNAG	4 cut(s)	71, 357, 410, 809
HpySE526I	ACGT	2 cut(s)	171, 750
Hsp92I	GRCGYC	2 cut(s)	78, 189
Hsp92II	CATG	5 cut(s)	16, 344, 431, 640, 682
HspAI	GCGC	4 cut(s)	99, 125, 130, 305
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	520, 681
LguI	GCTCTTC	2 cut(s)	149, 275
LmnI	GCTCC	2 cut(s)	385, 718
Lsp1109I	GCAGC	5 cut(s)	114, 355, 361, 646, 712
LweI	GCATC	4 cut(s)	355, 475, 720, 730
MaeI	CTAG	2 cut(s)	404, 765
MaeII	ACGT	2 cut(s)	171, 750
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	522, 683
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	2 cut(s)	520, 681
MboII	GAAGA	9 cut(s)	58, 157, 160, 163, 166, 292, 464, 628, 749
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	2 cut(s)	372, 604
MlyI	GAGTC	3 cut(s)	107, 258, 613
MmeI	TCCRAC	3 cut(s)	120, 451, 609
MroXI	GAANNNNTTC	2 cut(s)	242, 772
MseI	TTAA	4 cut(s)	269, 624, 714, 841
MspA1I	CMGCKG	2 cut(s)	200, 352
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	2 cut(s)	222, 778
MspR9I	CCNGG	5 cut(s)	223, 317, 537, 778, 835
MteI	GCGCNGCGC	1 cut(s)	128
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	317, 537, 835
MvnI	CGCG	3 cut(s)	99, 200, 305
MwoI	GCNNNNNNNGC	4 cut(s)	197, 374, 668, 700
NciI	CCSGG	2 cut(s)	223, 778
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	2 cut(s)	520, 681
NlaIII	CATG	5 cut(s)	16, 344, 431, 640, 682
NlaIV	GGNNCC	3 cut(s)	56, 220, 790
NmuCI	GTSAC	1 cut(s)	539
NsbI	TGCGCA	1 cut(s)	131
PaeR7I	CTCGAG	2 cut(s)	308, 329
PciSI	GCTCTTC	2 cut(s)	149, 275
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 183, 258
PdmI	GAANNNNTTC	2 cut(s)	242, 772
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	9 cut(s)	129, 161, 199, 202, 351, 370, 395, 661, 702
PleI	GAGTC	3 cut(s)	107, 257, 613
PpsI	GAGTC	3 cut(s)	107, 257, 613
Ppu21I	YACGTR	1 cut(s)	751
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	315, 535, 833
PspGI	CCWGG	3 cut(s)	315, 535, 833
PspN4I	GGNNCC	3 cut(s)	56, 220, 790
PspPI	GGNCC	5 cut(s)	55, 219, 300, 322, 789
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	2 cut(s)	149, 275
SaqAI	TTAA	4 cut(s)	269, 624, 714, 841
SatI	GCNGC	9 cut(s)	128, 160, 198, 201, 350, 369, 394, 660, 701
Sau3AI	GATC	2 cut(s)	520, 681
Sau96I	GGNCC	5 cut(s)	55, 219, 300, 322, 789
SchI	GAGTC	3 cut(s)	107, 258, 613
ScrFI	CCNGG	5 cut(s)	223, 317, 537, 778, 835
SetI	ASST	8 cut(s)	60, 72, 174, 318, 330, 447, 708, 753
SfaNI	GCATC	4 cut(s)	355, 475, 720, 730
Sfr274I	CTCGAG	2 cut(s)	308, 329
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	55, 300, 322
SlaI	CTCGAG	2 cut(s)	308, 329
SmlI	CTYRAG	3 cut(s)	308, 329, 623
SmoI	CTYRAG	3 cut(s)	308, 329, 623
Sse9I	AATT	2 cut(s)	372, 604
SsiI	CCGC	9 cut(s)	97, 159, 198, 200, 203, 303, 352, 394, 725
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	2 cut(s)	404, 765
StyD4I	CCNGG	5 cut(s)	221, 315, 535, 776, 833
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	174, 753
TaqI	TCGA	6 cut(s)	21, 30, 111, 252, 309, 330
TasI	AATT	2 cut(s)	372, 604
TauI	GCSGC	4 cut(s)	162, 200, 203, 396
Tru1I	TTAA	4 cut(s)	269, 624, 714, 841
Tru9I	TTAA	4 cut(s)	269, 624, 714, 841
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	5 cut(s)	127, 349, 368, 659, 700
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	17, 596
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	414
Tth111I	GACNNNGTC	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	3 cut(s)	55, 300, 322
XapI	RAATTY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	2 cut(s)	308, 329
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	242, 772
XspI	CTAG	2 cut(s)	404, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.