Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007953

Physical Location & Seq

Genomic Coordinates Forward (+)

9087641 .. 9090853

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACAAACGACTTTAAGCAGATAATGTGTAAAATATCAAACAAGCACACCAACCGAACGAACCACACAGGGCGGAAGAAGAAGATGATGCCCAGATGCTCTGTTCAATCGACCGACGCTCAGCTCGTCCAGAGCATAAATGGCCTCCAACAGCTTGCCGAAACGCACCGTTTCAAGGCCTGGTTCTTGGATCAGTTTGGAGTTCTCCATGATGGGAAGCAACCTTACCCTGGTGCAATTTCAACATTGAAGAAGCTAGCAAGCAGTGGTGCAAAGATGGTTATTATAAGTAATTCATCAAGACGCTCGTCTACAACCATGGATAAATTGAAAAGCCTTGGGTTCGATCCTTCTCTTTTTGTAGGAGCCATCACTAGTGGGGAACTGACACATCAAAACTTACTAAGGAGAGATGATGCTTGGTTCGCTGCACTGGGAAAATCTTGTATTCATATGACTTGGAGTGCTCGTGGTACCGTATCTCTTGAGGGATTGGGATTACAAGTTGTGGAGAATGTTCAAGACGCCGAATTTATTTTGGCCCATGGCTCTGAAGCCTTGGGGAGTCCTTCTGGTGATGCGATTCCAATGAAACTTGAGGAACTTGAAAGTATATTGGAACAATGTGCTGCTAAACACATCCCTATGGTGGTAGCAAATCCAGATTTTGTGACTGTTGAGGCTAGAGCTTTGCGTGTAATGCCTGGGACTTTGGCTTCCAAGTATGAAAAGCTCGGGGGTGAAGTGAAATGGATGGGCAAGCCTGATAAGATCATCTACAAATCAGCTATGGACTTAGCTGGTGTAGAGCCTGCTGAATCTATCGCAGTTGGCGATTCTCTTCACCACGACATCAAGGGTGCAAATGCAGCTGCAATCCAATCAGTTTTTGTCACCTGTGGGATCCATGGAAATGAACTTGGACTCAATAGTTTCGCGGACGTTGCAGATTTATCTTCCGTGCAAGCTCTTGCTTCCAAATACGATGCATACCCGTCGTACGTGTTACCTGCATTCACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

342

Amino Acids

36.96

Weight (kDa)

7.7

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10460
fragaria_vesca	FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490
malus_domestica	MD15G1148400.v1.1
prunus_persica	Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1
pyrus_communis	pycom15g13270
rosa_chinensis	RchiOBHm_Chr2g0085091
rosa_laevigata	RLG00000015655
rosa_multiflora	Rmu_sc0008647.1_g000015 Rmu_sc0008647.1_g000017
rosa_roxburghii	Rroxscaffold_2G00155640
rosa_rugosa	Rorug01G0457600 Rorug01G0457700
rosa_samantha	Rh2AG005900 Rh2BG006600 Rh2CG007300 Rh2DG007400
rosa_wichuraiana	Rw2G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	1018
Acc65I	GGTACC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	1 cut(s)	938
AciI	CCGC	2 cut(s)	73, 938
AclWI	GGATC	4 cut(s)	198, 341, 898, 911
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	475, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	175, 230, 649
AflIII	ACRYGT	1 cut(s)	1002
AgsI	TTSAA	7 cut(s)	107, 175, 243, 250, 331, 521, 608
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	3 cut(s)	179, 229, 703
AluBI	AGCT	9 cut(s)	124, 154, 256, 689, 733, 788, 800, 872, 968
AluI	AGCT	9 cut(s)	124, 154, 256, 689, 733, 788, 800, 872, 968
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	4 cut(s)	198, 341, 898, 911
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	142, 177, 540
ApeKI	GCWGC	4 cut(s)	428, 629, 869, 872
ApoI	RAATTY	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	4 cut(s)	587, 752, 836, 886
AsuNHI	GCTAGC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	734
BamHI	GGATCC	1 cut(s)	903
BanI	GGYRCC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	415, 616, 859, 881
BccI	CCATC	4 cut(s)	206, 271, 377, 748
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	3 cut(s)	181, 231, 705
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	3 cut(s)	257, 375, 684
BfuAI	ACCTGC	1 cut(s)	1018
BisI	GCNGC	4 cut(s)	429, 630, 870, 873
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	4 cut(s)	430, 631, 871, 874
Bme1390I	CCNGG	3 cut(s)	181, 231, 705
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	367, 475, 905
BmrFI	CCNGG	3 cut(s)	181, 231, 705
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	5 cut(s)	78, 86, 406, 568, 976
BmtI	GCTAGC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	443
BoxI	GACNNNNGTC	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	506, 617
BsaAI	YACGTR	1 cut(s)	1003
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	7 cut(s)	229, 318, 337, 544, 558, 704, 907
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 230, 649
Bse1I	ACTGG	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	181, 231, 705
BseDI	CCNNGG	7 cut(s)	229, 318, 337, 544, 558, 704, 907
BseGI	GGATG	2 cut(s)	639, 759
BseLI	CCNNNNNNNGG	3 cut(s)	175, 230, 649
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	4 cut(s)	415, 616, 859, 881
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	938
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	144, 179, 542
BshNI	GGYRCC	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	734
BsiWI	CGTACG	1 cut(s)	999
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	3 cut(s)	175, 230, 649
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	3 cut(s)	144, 179, 542
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	190, 346, 771, 903
Bsp1720I	GCTNAGC	1 cut(s)	120
Bsp19I	CCATGG	3 cut(s)	318, 544, 907
BspACI	CCGC	2 cut(s)	73, 938
BspANI	GGCC	3 cut(s)	144, 179, 542
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	938
BspLI	GGNNCC	3 cut(s)	367, 475, 905
BspMI	ACCTGC	1 cut(s)	1018
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	4 cut(s)	198, 341, 898, 911
BspT107I	GGYRCC	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	7 cut(s)	229, 318, 337, 544, 558, 704, 907
BssMI	GATC	4 cut(s)	190, 346, 771, 903
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	5 cut(s)	318, 337, 544, 558, 907
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	181, 231, 705
Bst4CI	ACNGT	3 cut(s)	170, 478, 676
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	1003
BstC8I	GCNNGC	6 cut(s)	156, 258, 262, 761, 813, 966
BstDEI	CTNAG	3 cut(s)	120, 404, 796
BstDSI	CCRYGG	3 cut(s)	318, 544, 907
BstF5I	GGATG	2 cut(s)	639, 759
BstFNI	CGCG	1 cut(s)	938
BstKTI	GATC	4 cut(s)	193, 349, 774, 906
BstMBI	GATC	4 cut(s)	190, 346, 771, 903
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 425, 700, 869, 944
BstNI	CCWGG	3 cut(s)	181, 231, 705
BstPAI	GACNNNNGTC	1 cut(s)	307
BstSCI	CCNGG	3 cut(s)	179, 229, 703
BstUI	CGCG	1 cut(s)	938
BstV1I	GCAGC	4 cut(s)	415, 616, 859, 881
BstX2I	RGATCY	1 cut(s)	903
BstYI	RGATCY	1 cut(s)	903
BsuRI	GGCC	3 cut(s)	144, 179, 542
BtgI	CCRYGG	3 cut(s)	318, 544, 907
BtsCI	GGATG	2 cut(s)	639, 759
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 431
BveI	ACCTGC	1 cut(s)	1018
Cac8I	GCNNGC	6 cut(s)	156, 258, 262, 761, 813, 966
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	3 cut(s)	125, 312, 533
Csp6I	GTAC	2 cut(s)	474, 1000
CviAII	CATG	5 cut(s)	209, 319, 545, 908, 1020
CviQI	GTAC	2 cut(s)	474, 1000
DdeI	CTNAG	3 cut(s)	120, 404, 796
DpnI	GATC	4 cut(s)	192, 348, 773, 905
DpnII	GATC	4 cut(s)	190, 346, 771, 903
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	5 cut(s)	318, 337, 544, 558, 907
Eco147I	AGGCCT	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	179, 229, 703
EcoT14I	CCWWGG	5 cut(s)	318, 337, 544, 558, 907
EcoT22I	ATGCAT	1 cut(s)	991
ErhI	CCWWGG	5 cut(s)	318, 337, 544, 558, 907
FaeI	CATG	5 cut(s)	212, 322, 548, 911, 1023
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	5 cut(s)	208, 318, 544, 907, 1019
FauNDI	CATATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	4 cut(s)	429, 630, 870, 873
FokI	GGATG	2 cut(s)	626, 766
Fsp4HI	GCNGC	4 cut(s)	429, 630, 870, 873
FspBI	CTAG	3 cut(s)	257, 375, 684
GluI	GCNGC	4 cut(s)	429, 630, 870, 873
HaeIII	GGCC	3 cut(s)	144, 179, 542
HgaI	GACGC	3 cut(s)	125, 312, 533
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	212, 322, 548, 911, 1023
HinfI	GANTC	5 cut(s)	565, 583, 818, 836, 924
HphI	GGTGA	4 cut(s)	587, 752, 836, 886
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	5 cut(s)	130, 300, 485, 521, 662
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	2 cut(s)	119, 1000
HpyAV	CCTTC	2 cut(s)	360, 579
HpyCH4III	ACNGT	3 cut(s)	170, 478, 676
HpyCH4IV	ACGT	2 cut(s)	942, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 425, 700, 869, 944
HpyF3I	CTNAG	3 cut(s)	120, 404, 796
HpySE526I	ACGT	2 cut(s)	942, 1002
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	5 cut(s)	212, 322, 548, 911, 1023
KpnI	GGTACC	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	190, 346, 771, 903
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	4 cut(s)	415, 616, 859, 881
LweI	GCATC	5 cut(s)	78, 86, 406, 568, 976
MaeI	CTAG	3 cut(s)	257, 375, 684
MaeII	ACGT	2 cut(s)	942, 1002
MaeIII	GTNAC	3 cut(s)	670, 892, 1005
MalI	GATC	4 cut(s)	192, 348, 773, 905
MboI	GATC	4 cut(s)	190, 346, 771, 903
MboII	GAAGA	6 cut(s)	88, 91, 94, 262, 833, 948
MflI	RGATCY	1 cut(s)	903
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	4 cut(s)	237, 292, 326, 530
MlyI	GAGTC	2 cut(s)	574, 918
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	155, 481, 592, 673
Mph1103I	ATGCAT	1 cut(s)	991
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	3 cut(s)	644, 912, 1018
MspA1I	CMGCKG	1 cut(s)	872
MspR9I	CCNGG	3 cut(s)	181, 231, 705
Mva1269I	GAATGC	1 cut(s)	1013
MvaI	CCWGG	3 cut(s)	181, 231, 705
MvnI	CGCG	1 cut(s)	938
MwoI	GCNNNNNNNGC	5 cut(s)	141, 425, 700, 869, 944
NcoI	CCATGG	3 cut(s)	318, 544, 907
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	4 cut(s)	190, 346, 771, 903
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	212, 322, 548, 911, 1023
NlaIV	GGNNCC	3 cut(s)	367, 475, 905
NmuCI	GTSAC	2 cut(s)	670, 892
NsiI	ATGCAT	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 831
PctI	GAATGC	1 cut(s)	1013
PfeI	GAWTC	3 cut(s)	583, 818, 836
Pfl23II	CGTACG	1 cut(s)	999
PkrI	GCNGC	4 cut(s)	430, 631, 871, 874
PleI	GAGTC	2 cut(s)	573, 918
PpsI	GAGTC	2 cut(s)	573, 918
Ppu21I	YACGTR	1 cut(s)	1003
PshAI	GACNNNNGTC	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	179, 229, 703
PspGI	CCWGG	3 cut(s)	179, 229, 703
PspLI	CGTACG	1 cut(s)	999
PspN4I	GGNNCC	3 cut(s)	367, 475, 905
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	2 cut(s)	475, 1001
RsaNI	GTAC	2 cut(s)	474, 1000
RseI	CAYNNNNRTG	3 cut(s)	644, 912, 1018
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	4 cut(s)	429, 630, 870, 873
Sau3AI	GATC	4 cut(s)	190, 346, 771, 903
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	574, 918
ScrFI	CCNGG	3 cut(s)	181, 231, 705
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	5 cut(s)	78, 86, 406, 568, 976
SmiMI	CAYNNNNRTG	3 cut(s)	644, 912, 1018
SmlI	CTYRAG	2 cut(s)	485, 596
SmoI	CTYRAG	2 cut(s)	485, 596
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	4 cut(s)	237, 292, 326, 530
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	73, 938
SspMI	CTAG	3 cut(s)	257, 375, 684
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	179, 229, 703
StyI	CCWWGG	5 cut(s)	318, 337, 544, 558, 907
TaaI	ACNGT	3 cut(s)	170, 478, 676
TaiI	ACGT	2 cut(s)	945, 1005
TaqI	TCGA	2 cut(s)	110, 345
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	237, 292, 326, 530
TfiI	GAWTC	3 cut(s)	583, 818, 836
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	271, 438
TseFI	GTSAC	2 cut(s)	670, 892
TseI	GCWGC	4 cut(s)	428, 629, 869, 872
Tsp45I	GTSAC	2 cut(s)	670, 892
TspDTI	ATGAA	5 cut(s)	285, 440, 605, 741, 930
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	2 cut(s)	271, 438
XapI	RAATTY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	3 cut(s)	257, 375, 684
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.