Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007953

Physical Location & Seq

Genomic Coordinates Reverse (-)

262218 .. 265155

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00490.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGATTATAAGTAACTCCTCTAGACGAGCTTCTACAACATTGGAGAAATTGGGAAGCCTTGGGTTTGATCCTTCTCTCTTTGTAGGAGCCGTTACTAGTGGAGAGCTAACACATCAGAGCTTGCAAAGGAGAGATGATGCTTGGTTTGCAGCGCTAGGAAAGTGTTGCATTCATATGACTTGGAGCGGTCGTGGTGCAATATCTCTTGAGGGCCTTGAATTACAAATTGTCGAAAATGTTAAAGATGCTGACTTTATTTTGGCCCATGGCACTGAAGCCTTGGGGAATCCGTCTGGTGATGCAATTCCCATGAAACTGGAGGAACTTGAAAATATATTGGAACAATGTGCTGCTAAGCACATTCCTATGGTGGTGGCCAATCCTGATTTTGTGACTGTTGAGGCTAGAGCTTTGCGTGTAATGCCAGGGACTCTGGCTGCCAAATATGAAGAGTTGGGGGGTGAAGTGAAATGGATGGGCAAGCCTGATAAGATCATCTATAAAGCAGCCATGGAGTTAGTTGGTGTAGACCCTATTGATTCTATTGCAGTGGGAGATTCTCTTCATCATGACATCAAGGGTGCAAATGCAGCTGCAGTTCAATCAGTTTTAATCACTGGTGGAATCCATGCAACTGAACTTGGACTTAGTAGTTTTGCAGACATAGCAGATTTATCTTCTGTGCAAGCTCTTGCTTCCAAATATGATGCTTACCCATCGTATGTGTTACCTGCGTTTACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

250

Amino Acids

26.55

Weight (kDa)

4.95

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	33 - 110	2.9e-14	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10460
fragaria_vesca	FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490
malus_domestica	MD15G1148400.v1.1
prunus_persica	Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1
pyrus_communis	pycom15g13270
rosa_chinensis	RchiOBHm_Chr2g0085091
rosa_laevigata	RLG00000015655
rosa_multiflora	Rmu_sc0008647.1_g000015 Rmu_sc0008647.1_g000017
rosa_roxburghii	Rroxscaffold_2G00155640
rosa_rugosa	Rorug01G0457600 Rorug01G0457700
rosa_samantha	Rh2AG005900 Rh2BG006600 Rh2CG007300 Rh2DG007400
rosa_wichuraiana	Rw2G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	297
AfeI	AGCGCT	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	221, 332, 605
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	32, 109, 123, 413, 596, 692
AluI	AGCT	6 cut(s)	32, 109, 123, 413, 596, 692
AlwI	GGATC	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	156
AoxI	GGCC	3 cut(s)	214, 264, 378
ApeKI	GCWGC	6 cut(s)	152, 353, 440, 509, 593, 596
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	214, 265
AsuHPI	GGTGA	3 cut(s)	16, 311, 476
BalI	TGGCCA	1 cut(s)	380
BbvI	GCAGC	6 cut(s)	164, 340, 427, 521, 583, 605
BccI	CCATC	2 cut(s)	472, 727
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	429
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	4 cut(s)	24, 99, 158, 408
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	742
BisI	GCNGC	6 cut(s)	153, 354, 441, 510, 594, 597
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	6 cut(s)	154, 355, 442, 511, 595, 598
Bme1390I	CCNGG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	214, 265
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	4 cut(s)	130, 238, 292, 700
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	61, 268, 282, 428, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse1I	ACTGG	2 cut(s)	324, 625
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	5 cut(s)	61, 268, 282, 428, 513
BseGI	GGATG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	324, 625
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	6 cut(s)	164, 340, 427, 521, 583, 605
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	216, 266, 380
BsiEI	CGRYCG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	216, 266, 380
Bsp143I	GATC	2 cut(s)	70, 495
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	268, 513
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	3 cut(s)	216, 266, 380
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	324, 625
BssECI	CCNNGG	5 cut(s)	61, 268, 282, 428, 513
BssMI	GATC	2 cut(s)	70, 495
BssT1I	CCWWGG	4 cut(s)	61, 268, 282, 513
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	447, 570
BstC8I	GCNNGC	3 cut(s)	125, 485, 690
BstDEI	CTNAG	2 cut(s)	357, 650
BstDSI	CCRYGG	2 cut(s)	268, 513
BstF5I	GGATG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	73, 498
BstMBI	GATC	2 cut(s)	70, 495
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 424, 593, 668
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	6 cut(s)	164, 340, 427, 521, 583, 605
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	216, 266, 380
BtgI	CCRYGG	2 cut(s)	268, 513
BtsCI	GGATG	1 cut(s)	483
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	273, 558, 618
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	3 cut(s)	125, 485, 690
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	214, 265
CviAII	CATG	6 cut(s)	269, 313, 514, 572, 632, 744
DdeI	CTNAG	2 cut(s)	357, 650
DpnI	GATC	2 cut(s)	72, 497
DpnII	GATC	2 cut(s)	70, 495
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	447, 570
EarI	CTCTTC	2 cut(s)	447, 570
Eco130I	CCWWGG	4 cut(s)	61, 268, 282, 513
Eco47III	AGCGCT	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	4 cut(s)	61, 268, 282, 513
ErhI	CCWWGG	4 cut(s)	61, 268, 282, 513
FaeI	CATG	6 cut(s)	272, 316, 517, 575, 635, 747
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	6 cut(s)	268, 312, 513, 571, 631, 743
FauNDI	CATATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	6 cut(s)	153, 354, 441, 510, 594, 597
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	6 cut(s)	153, 354, 441, 510, 594, 597
FspBI	CTAG	4 cut(s)	24, 99, 158, 408
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	6 cut(s)	153, 354, 441, 510, 594, 597
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	216, 266, 380
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	6 cut(s)	272, 316, 517, 575, 635, 747
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	5 cut(s)	289, 433, 542, 560, 627
HphI	GGTGA	3 cut(s)	16, 311, 476
Hpy166II	GTNNAC	2 cut(s)	532, 741
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	4 cut(s)	24, 209, 386, 572
Hpy8I	GTNNAC	2 cut(s)	532, 741
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 424, 593, 668
HpyF3I	CTNAG	2 cut(s)	357, 650
Hsp92II	CATG	6 cut(s)	272, 316, 517, 575, 635, 747
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	70, 495
LmnI	GCTCC	2 cut(s)	89, 186
LpnPI	CCDG	8 cut(s)	282, 305, 399, 414, 422, 441, 501, 606
Lsp1109I	GCAGC	6 cut(s)	164, 340, 427, 521, 583, 605
LweI	GCATC	4 cut(s)	130, 238, 292, 700
MaeI	CTAG	4 cut(s)	24, 99, 158, 408
MaeIII	GTNAC	4 cut(s)	14, 94, 394, 729
MalI	GATC	2 cut(s)	72, 497
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	70, 495
MboII	GAAGA	3 cut(s)	464, 557, 672
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	4 cut(s)	50, 221, 228, 306
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	31, 205, 316, 397
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	2 cut(s)	243, 614
MslI	CAYNNNNRTG	2 cut(s)	176, 368
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	149, 424, 593, 668
NcoI	CCATGG	2 cut(s)	268, 513
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	2 cut(s)	70, 495
NlaIII	CATG	6 cut(s)	272, 316, 517, 575, 635, 747
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	394
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	289, 542, 560, 627
PkrI	GCNGC	6 cut(s)	154, 355, 442, 511, 595, 598
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	214, 265
PstI	CTGCAG	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	596
RseI	CAYNNNNRTG	2 cut(s)	176, 368
SaqAI	TTAA	2 cut(s)	243, 614
SatI	GCNGC	6 cut(s)	153, 354, 441, 510, 594, 597
Sau3AI	GATC	2 cut(s)	70, 495
Sau96I	GGNCC	2 cut(s)	214, 265
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	7 cut(s)	34, 111, 125, 415, 598, 694, 736
SfaNI	GCATC	4 cut(s)	130, 238, 292, 700
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	176, 368
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	4 cut(s)	50, 221, 228, 306
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	4 cut(s)	24, 99, 158, 408
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	4 cut(s)	61, 268, 282, 513
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	234
TasI	AATT	4 cut(s)	50, 221, 228, 306
TfiI	GAWTC	4 cut(s)	289, 542, 560, 627
Tru1I	TTAA	2 cut(s)	243, 614
Tru9I	TTAA	2 cut(s)	243, 614
TscAI	CASTG	3 cut(s)	280, 558, 625
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	6 cut(s)	152, 353, 440, 509, 593, 596
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	4 cut(s)	164, 329, 465, 557
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	3 cut(s)	280, 558, 625
XbaI	TCTAGA	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	4 cut(s)	24, 99, 158, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.