Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007953

Physical Location & Seq

Genomic Coordinates Forward (+)

92056823 .. 92059244

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTGCCCGGATGCTCCGTTCAATCCTCAGATGTTCAGCTCTTTCAGACCATAACTGGCCTTCAACAACTCGCAGAAACCCATCATTTCAAGGCCTGGTTATTAGATCAGTTTGGAGTACTCCACGATGGGAAGCAGCCTTATCCCGGAGCAATTTCAACATTGAAGAAGCTAGCAAATAGTGGTGCAAAGATGGTTATTATAAGTAATTCATCTAGACGCTCGTCTACGACATTGGAGAAATTGAGCAGCCTTGGGTTTGATCCTTCTCTCTTTGTAGGAGCCATCACTAGCGGAGAATTAACACATCAGAGCTTGCAAAGGAGAGATGATGCTTGGTTTGCAGCACTGGGAAAATCTTGCATTCATATGACTTGGAGTGCTCGTGGTGCCATATCTCTTGAGGGCCTTGGATTACAAGTTGTGGAAAATGTTCAAGATGCTGACTTTATTTTGGCTCATGGCACTGAAGCCTTGGGGAATCCTTCAGGTGATGCAATTCCCATGAAACTGGAGGAACTTGAGAATATATTGGAACAATGTGCTGCTAAGCACATTCCTATGGTGGTGGCCAATCCTGATTTTGTGACTGTTGAGGCTAGAGCTTTGCGTGTGATGCCGGGGACTCTGGCTGCCAAATATGAAGAGCTGGGGGGTGAAGTGAAATGGATGGGCAAGCCTGATAAGATCATCTATAAATCAGCCATGGCCTTAGTTGGTGTAGACCCTATTGATTCTATTGCAGTGGGCGATTCCCTTCATCATGACATCAAGGGTGCAAATGCAGCTGCAGTCCAATCAGTTTTAATCACTGGTGGAATCCATGCAACTGAACTTGGACTTGGTAGTTTTGCAGAAGTAGCAGATTTATCTTCTGTGCAAGCTCTTGCTTCCAAATATGATGCTTACCCATCGTATGTGTTGCCTGCCTTTACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

313

Amino Acids

33.37

Weight (kDa)

5.43

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	33 - 119	4e-15	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	173 - 263	6.8e-06	haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	224 - 278	4.3e-12	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10460
fragaria_vesca	FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490
malus_domestica	MD15G1148400.v1.1
prunus_persica	Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1
pyrus_communis	pycom15g13270
rosa_chinensis	RchiOBHm_Chr2g0085091
rosa_laevigata	RLG00000015655
rosa_multiflora	Rmu_sc0008647.1_g000015 Rmu_sc0008647.1_g000017
rosa_roxburghii	Rroxscaffold_2G00155640
rosa_rugosa	Rorug01G0457600 Rorug01G0457700
rosa_samantha	Rh2AG005900 Rh2BG006600 Rh2CG007300 Rh2DG007400
rosa_wichuraiana	Rw2G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	4, 389
AccI	GTMKAC	2 cut(s)	227, 723
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	471, 489
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	146, 936
AgsI	TTSAA	6 cut(s)	23, 65, 91, 159, 166, 437
AjnI	CCWGG	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	7 cut(s)	40, 172, 315, 605, 649, 788, 884
AluI	AGCT	7 cut(s)	40, 172, 315, 605, 649, 788, 884
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	5 cut(s)	58, 93, 406, 570, 708
ApeKI	GCWGC	7 cut(s)	136, 249, 344, 545, 632, 785, 788
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	3 cut(s)	9, 147, 621
AsuHPI	GGTGA	2 cut(s)	503, 668
AsuNHI	GCTAGC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	2 cut(s)	4, 389
BauI	CACGAG	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	7 cut(s)	148, 261, 356, 532, 619, 775, 797
BccI	CCATC	6 cut(s)	90, 122, 187, 293, 664, 919
BciT130I	CCWGG	1 cut(s)	97
BcnI	CCSGG	3 cut(s)	9, 147, 621
BfaI	CTAG	4 cut(s)	173, 216, 291, 600
BfmI	CTRYAG	1 cut(s)	789
BisI	GCNGC	7 cut(s)	137, 250, 345, 546, 633, 786, 789
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	7 cut(s)	138, 251, 346, 547, 634, 787, 790
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	4 cut(s)	9, 97, 147, 621
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	3 cut(s)	6, 283, 391
BmrFI	CCNGG	4 cut(s)	9, 97, 147, 621
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	6 cut(s)	2, 322, 430, 484, 606, 892
BmtI	GCTAGC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	359
BoxI	GACNNNNGTC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	533
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	2 cut(s)	422, 542
BpuMI	CCSGG	3 cut(s)	9, 147, 621
BsaJI	CCNNGG	5 cut(s)	253, 409, 474, 620, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 936
Bse1I	ACTGG	4 cut(s)	61, 354, 516, 817
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	5 cut(s)	253, 409, 474, 620, 705
BseGI	GGATG	2 cut(s)	17, 675
BseLI	CCNNNNNNNGG	2 cut(s)	146, 936
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	4 cut(s)	61, 354, 516, 817
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	7 cut(s)	148, 261, 356, 532, 619, 775, 797
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BshNI	GGYRCC	2 cut(s)	4, 389
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	9, 147, 620
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	146, 936
BsmFI	GGGAC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	5 cut(s)	60, 95, 408, 572, 710
Bsp1286I	GDGCHC	2 cut(s)	9, 385
Bsp143I	GATC	3 cut(s)	106, 262, 687
Bsp1720I	GCTNAGC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BspCNI	CTCAG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	6, 283, 391
BspMAI	CTGCAG	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	2 cut(s)	4, 389
BsrI	ACTGG	4 cut(s)	61, 354, 516, 817
BssECI	CCNNGG	5 cut(s)	253, 409, 474, 620, 705
BssMI	GATC	3 cut(s)	106, 262, 687
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	4 cut(s)	253, 409, 474, 705
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	639
BstC8I	GCNNGC	5 cut(s)	174, 317, 677, 882, 927
BstDEI	CTNAG	3 cut(s)	28, 549, 712
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	17, 675
BstKTI	GATC	3 cut(s)	109, 265, 690
BstMBI	GATC	3 cut(s)	106, 262, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 389, 616, 785, 860
BstNI	CCWGG	1 cut(s)	97
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	7, 95, 145, 619
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	7 cut(s)	148, 261, 356, 532, 619, 775, 797
BstXI	CCANNNNNNTGG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	17, 675
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	4 cut(s)	347, 465, 750, 810
Cac8I	GCNNGC	5 cut(s)	174, 317, 677, 882, 927
CciI	TCATGA	1 cut(s)	763
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	6 cut(s)	461, 505, 706, 764, 824, 936
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	28, 549, 712
DpnI	GATC	3 cut(s)	108, 264, 689
DpnII	GATC	3 cut(s)	106, 262, 687
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	4 cut(s)	253, 409, 474, 705
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	471, 489
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	4 cut(s)	253, 409, 474, 705
ErhI	CCWWGG	4 cut(s)	253, 409, 474, 705
FaeI	CATG	6 cut(s)	464, 508, 709, 767, 827, 939
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	6 cut(s)	460, 504, 705, 763, 823, 935
FauNDI	CATATG	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	227, 723
Fnu4HI	GCNGC	7 cut(s)	137, 250, 345, 546, 633, 786, 789
FokI	GGATG	2 cut(s)	24, 682
Fsp4HI	GCNGC	7 cut(s)	137, 250, 345, 546, 633, 786, 789
FspBI	CTAG	4 cut(s)	173, 216, 291, 600
GluI	GCNGC	7 cut(s)	137, 250, 345, 546, 633, 786, 789
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	60, 95, 408, 572, 710
HapII	CCGG	3 cut(s)	9, 147, 620
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	6 cut(s)	464, 508, 709, 767, 827, 939
HinfI	GANTC	5 cut(s)	481, 625, 734, 752, 819
HpaII	CCGG	3 cut(s)	9, 147, 620
HphI	GGTGA	2 cut(s)	503, 668
Hpy166II	GTNNAC	2 cut(s)	228, 724
Hpy188I	TCNGA	3 cut(s)	31, 48, 312
Hpy188III	TCNNGA	5 cut(s)	216, 401, 437, 578, 764
Hpy8I	GTNNAC	2 cut(s)	228, 724
HpyAV	CCTTC	4 cut(s)	71, 276, 495, 767
HpyCH4III	ACNGT	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 389, 616, 785, 860
HpyF3I	CTNAG	3 cut(s)	28, 549, 712
Hsp92II	CATG	6 cut(s)	464, 508, 709, 767, 827, 939
Kzo9I	GATC	3 cut(s)	106, 262, 687
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	3 cut(s)	20, 149, 281
Lsp1109I	GCAGC	7 cut(s)	148, 261, 356, 532, 619, 775, 797
LweI	GCATC	6 cut(s)	2, 322, 430, 484, 606, 892
MaeI	CTAG	4 cut(s)	173, 216, 291, 600
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	108, 264, 689
MboI	GATC	3 cut(s)	106, 262, 687
MboII	GAAGA	3 cut(s)	178, 656, 864
MhlI	GDGCHC	2 cut(s)	9, 385
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	5 cut(s)	153, 208, 242, 299, 498
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	619
MnlI	CCTC	4 cut(s)	37, 397, 508, 589
Mox20I	TGGCCA	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	2 cut(s)	302, 806
MslI	CAYNNNNRTG	2 cut(s)	368, 560
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	3 cut(s)	9, 147, 620
MspR9I	CCNGG	4 cut(s)	9, 97, 147, 621
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	5 cut(s)	341, 389, 616, 785, 860
NciI	CCSGG	3 cut(s)	9, 147, 621
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	3 cut(s)	106, 262, 687
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	464, 508, 709, 767, 827, 939
NlaIV	GGNNCC	3 cut(s)	6, 283, 391
NmuCI	GTSAC	1 cut(s)	586
PagI	TCATGA	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	481, 734, 752, 819
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	7 cut(s)	138, 251, 346, 547, 634, 787, 790
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	6, 283, 391
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	368, 560
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	302, 806
SatI	GCNGC	7 cut(s)	137, 250, 345, 546, 633, 786, 789
Sau3AI	GATC	3 cut(s)	106, 262, 687
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	4 cut(s)	9, 97, 147, 621
SduI	GDGCHC	2 cut(s)	9, 385
SetI	ASST	8 cut(s)	42, 174, 317, 493, 607, 651, 790, 886
SfaNI	GCATC	6 cut(s)	2, 322, 430, 484, 606, 892
SfcI	CTRYAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	368, 560
SmlI	CTYRAG	2 cut(s)	401, 521
SmoI	CTYRAG	2 cut(s)	401, 521
Sse9I	AATT	5 cut(s)	153, 208, 242, 299, 498
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	4 cut(s)	173, 216, 291, 600
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	4 cut(s)	7, 95, 145, 619
StyI	CCWWGG	4 cut(s)	253, 409, 474, 705
TaaI	ACNGT	1 cut(s)	592
TasI	AATT	5 cut(s)	153, 208, 242, 299, 498
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	4 cut(s)	481, 734, 752, 819
Tru1I	TTAA	2 cut(s)	302, 806
Tru9I	TTAA	2 cut(s)	302, 806
TscAI	CASTG	4 cut(s)	354, 472, 750, 817
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	7 cut(s)	136, 249, 344, 545, 632, 785, 788
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	5 cut(s)	201, 356, 521, 657, 749
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	4 cut(s)	354, 472, 750, 817
XbaI	TCTAGA	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	227, 723
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	173, 216, 291, 600
ZrmI	AGTACT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.