Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0007953

Physical Location & Seq

Genomic Coordinates Forward (+)

61607 .. 63673

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgatgcccagatgctccgttcaatcctcagatgttcagctctttcagaccataactggccttcaacaactcgccgaaacccaccgtttcaaggcctggttattagatcagtttggagtacttcacgatgggaaacagccttatcccggagcaatttcaacattgaagaagctagcaaatagtggtgcaaagatggttattataagtaattcatctagacgctcgtctgcgaccttggagaaattgagcagccttgggtttgatccttctctctttgtgggagccatcactagcggggaattaacacatcagagcttgcaaaggagagatgatgcttggtttgcagcactgggaaaatcttgcattcatatgacttggagtgctcgtggtgccatatctcttgagggccttggattacaagttgtagaaaatgttcaagatgctgactttattttggctcatggcactgaagccttggggaatccttcaggtgatgcaattcccatgaaactggaggaacttgagaatatattggaacaatgtgctgctaagcacattcctatggtggtggccaatcctgattttgtgactgttgaggctagagctttgcgtgtgatgccagggactctggctgccaaatatgaagagctggggggtgaagtgaaatggatgggcaagcctgataagattatctataaatcagccatggccttagttggtgtagaccctattgattctattgcagtgggcgattctcttcatcatgacatcaagggtgcaaatgcagctgcaatccaatcagcgccctcaaacgtctgttgtcctgttcatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

278

Amino Acids

29.77

Weight (kDa)

5.98

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10460
fragaria_vesca	FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490 FvH4_1g00490
malus_domestica	MD15G1148400.v1.1
prunus_persica	Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1 Prupe.7G267200_v2.0.a1
pyrus_communis	pycom15g13270
rosa_chinensis	RchiOBHm_Chr2g0085091
rosa_laevigata	RLG00000015655
rosa_multiflora	Rmu_sc0008647.1_g000015 Rmu_sc0008647.1_g000017
rosa_roxburghii	Rroxscaffold_2G00155640
rosa_rugosa	Rorug01G0457600 Rorug01G0457700
rosa_samantha	Rh2AG005900 Rh2BG006600 Rh2CG007300 Rh2DG007400
rosa_wichuraiana	Rw2G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	471, 489
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	91, 146
AgsI	TTSAA	6 cut(s)	23, 65, 91, 159, 166, 437
AjnI	CCWGG	2 cut(s)	95, 619
AluBI	AGCT	6 cut(s)	40, 172, 315, 605, 649, 788
AluI	AGCT	6 cut(s)	40, 172, 315, 605, 649, 788
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	5 cut(s)	58, 93, 406, 570, 708
ApeKI	GCWGC	6 cut(s)	249, 344, 545, 632, 785, 788
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	503, 668
AsuNHI	GCTAGC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	6 cut(s)	261, 356, 532, 619, 775, 797
BccI	CCATC	4 cut(s)	122, 187, 293, 664
BciT130I	CCWGG	2 cut(s)	97, 621
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	4 cut(s)	173, 216, 291, 600
BfoI	RGCGCY	1 cut(s)	806
BisI	GCNGC	6 cut(s)	250, 345, 546, 633, 786, 789
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	6 cut(s)	251, 346, 547, 634, 787, 790
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	97, 147, 621
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	283, 391
BmrFI	CCNGG	3 cut(s)	97, 147, 621
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	5 cut(s)	2, 322, 430, 484, 606
BmtI	GCTAGC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	359
BoxI	GACNNNNGTC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	533
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	2 cut(s)	422, 542
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	6 cut(s)	234, 253, 409, 474, 620, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 146
Bse1I	ACTGG	3 cut(s)	61, 354, 516
BseBI	CCWGG	2 cut(s)	97, 621
BseDI	CCNNGG	6 cut(s)	234, 253, 409, 474, 620, 705
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	91, 146
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	3 cut(s)	61, 354, 516
BseXI	GCAGC	6 cut(s)	261, 356, 532, 619, 775, 797
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	91, 146
BsmFI	GGGAC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	5 cut(s)	60, 95, 408, 572, 710
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	106, 262
Bsp1720I	GCTNAGC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BspCNI	CTCAG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	283, 391
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	61, 354, 516
BssECI	CCNNGG	6 cut(s)	234, 253, 409, 474, 620, 705
BssMI	GATC	2 cut(s)	106, 262
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	5 cut(s)	234, 253, 409, 474, 705
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	97, 621
Bst4CI	ACNGT	2 cut(s)	86, 592
Bst6I	CTCTTC	2 cut(s)	639, 762
BstC8I	GCNNGC	3 cut(s)	174, 317, 677
BstDEI	CTNAG	3 cut(s)	28, 549, 712
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	805
BstKTI	GATC	2 cut(s)	109, 265
BstMBI	GATC	2 cut(s)	106, 262
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 389, 616, 785
BstNI	CCWGG	2 cut(s)	97, 621
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	95, 145, 619
BstV1I	GCAGC	6 cut(s)	261, 356, 532, 619, 775, 797
BstXI	CCANNNNNNTGG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	60, 95, 408, 572, 710
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	675
BtsI	GCAGTG	1 cut(s)	750
BtsIMutI	CAGTG	3 cut(s)	347, 465, 750
Cac8I	GCNNGC	3 cut(s)	174, 317, 677
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	5 cut(s)	461, 505, 706, 764, 830
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	28, 549, 712
DpnI	GATC	2 cut(s)	108, 264
DpnII	GATC	2 cut(s)	106, 262
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	639, 762
EarI	CTCTTC	2 cut(s)	639, 762
Eco130I	CCWWGG	5 cut(s)	234, 253, 409, 474, 705
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	471, 489
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	95, 619
EcoT14I	CCWWGG	5 cut(s)	234, 253, 409, 474, 705
EcoT22I	ATGCAT	1 cut(s)	835
ErhI	CCWWGG	5 cut(s)	234, 253, 409, 474, 705
FaeI	CATG	5 cut(s)	464, 508, 709, 767, 833
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	5 cut(s)	460, 504, 705, 763, 829
FauI	CCCGC	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	6 cut(s)	250, 345, 546, 633, 786, 789
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	6 cut(s)	250, 345, 546, 633, 786, 789
FspBI	CTAG	4 cut(s)	173, 216, 291, 600
GlaI	GCGC	1 cut(s)	804
GluI	GCNGC	6 cut(s)	250, 345, 546, 633, 786, 789
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	5 cut(s)	60, 95, 408, 572, 710
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	805
Hin1II	CATG	5 cut(s)	464, 508, 709, 767, 833
Hin6I	GCGC	1 cut(s)	803
HinP1I	GCGC	1 cut(s)	803
HinfI	GANTC	4 cut(s)	481, 625, 734, 752
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	503, 668
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	3 cut(s)	31, 48, 312
Hpy188III	TCNNGA	6 cut(s)	125, 216, 401, 437, 578, 764
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	3 cut(s)	71, 276, 495
HpyCH4III	ACNGT	2 cut(s)	86, 592
HpyCH4IV	ACGT	1 cut(s)	813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 389, 616, 785
HpyF3I	CTNAG	3 cut(s)	28, 549, 712
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	5 cut(s)	464, 508, 709, 767, 833
HspAI	GCGC	1 cut(s)	803
Kzo9I	GATC	2 cut(s)	106, 262
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	3 cut(s)	20, 149, 281
Lsp1109I	GCAGC	6 cut(s)	261, 356, 532, 619, 775, 797
LweI	GCATC	5 cut(s)	2, 322, 430, 484, 606
MaeI	CTAG	4 cut(s)	173, 216, 291, 600
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	2 cut(s)	108, 264
MboI	GATC	2 cut(s)	106, 262
MboII	GAAGA	3 cut(s)	178, 656, 749
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	5 cut(s)	153, 208, 242, 299, 498
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	619
MnlI	CCTC	5 cut(s)	37, 397, 508, 589, 817
Mox20I	TGGCCA	1 cut(s)	572
Mph1103I	ATGCAT	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	368, 560
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	97, 147, 621
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	97, 621
MwoI	GCNNNNNNNGC	4 cut(s)	341, 389, 616, 785
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	2 cut(s)	106, 262
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	5 cut(s)	464, 508, 709, 767, 833
NlaIV	GGNNCC	2 cut(s)	283, 391
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	835
PagI	TCATGA	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	481, 734, 752
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	6 cut(s)	251, 346, 547, 634, 787, 790
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	95, 619
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	95, 619
PspN4I	GGNNCC	2 cut(s)	283, 391
PspPI	GGNCC	1 cut(s)	406
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	368, 560
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	6 cut(s)	250, 345, 546, 633, 786, 789
Sau3AI	GATC	2 cut(s)	106, 262
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	97, 147, 621
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	9 cut(s)	42, 174, 236, 317, 493, 607, 651, 790, 816
SfaNI	GCATC	5 cut(s)	2, 322, 430, 484, 606
SmiMI	CAYNNNNRTG	2 cut(s)	368, 560
SmlI	CTYRAG	2 cut(s)	401, 521
SmoI	CTYRAG	2 cut(s)	401, 521
Sse9I	AATT	5 cut(s)	153, 208, 242, 299, 498
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	4 cut(s)	173, 216, 291, 600
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	95, 145, 619
StyI	CCWWGG	5 cut(s)	234, 253, 409, 474, 705
TaaI	ACNGT	2 cut(s)	86, 592
TaiI	ACGT	1 cut(s)	816
TasI	AATT	5 cut(s)	153, 208, 242, 299, 498
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	481, 734, 752
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	3 cut(s)	354, 472, 750
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	6 cut(s)	249, 344, 545, 632, 785, 788
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	6 cut(s)	201, 356, 521, 657, 749, 818
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	3 cut(s)	354, 472, 750
XbaI	TCTAGA	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	173, 216, 291, 600
ZrmI	AGTACT	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.