Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300831.1

Orthogroup ID

OG0007175

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 863

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgcatttccagagagactccgtcaaagcacatgctacaaagtctttctaccctaatgttgtgacaagcacagaacagtcggttcccatggattttgttaacgggagttcctgctctaacaaatcagactatcttaattgcaagtattcagatatgtggacttcttctggagataaacagcattcgttgggaaggtttgaactgaaatatgtagaaagctctagcctattgaccaccgatgagggactcgaggagtttactgaccagtccactgagaatgccggtactttattcagaccagtagaaccggaaaccatatcagctactgatttgacacaaggagattccacctctttatcggacgccctagacacgagtaatgatcaattgtccagcgtgaaacctagtattgaggatcttattgatggggttagcaagtctttcagtgcttcagtagataagggagaaagtgctgtgaaaagctcactagatacaatcacttcgtcaatatcatcagttgttgaaagggttaatgcagcagtggataatgctgttggcggaatttcttcaaccgttgatcaaacgggacaattaggtggtactaaactgacaaacttttcaagtgactttaaggaagccacaagtaaaggaagtgtgattgctgttgaccttttgagacgcacaattgttgtggtggaggattctctagcaaatggggtttccttcgctgttaattcttaccaatcttccaaggcctttcttcctcctgacatcagtgatgcactaaatttgtctgaaaagagagcagcagagtttttggggcctgccaatgctgcttttcaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

282

Amino Acids

30.04

Weight (kDa)

4.48

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59780
fragaria_vesca	FvH4_1g00540 FvH4_1g00540 FvH4_1g00540 FvH4_1g00540 FvH4_1g00540 FvH4_1g00540
malus_domestica	MD02G1004500.v1.1 MD15G1148200.v1.1
prunus_persica	Prupe.7G266600_v2.0.a1 Prupe.7G266600_v2.0.a1 Prupe.7G266600_v2.0.a1 Prupe.7G266600_v2.0.a1
pyrus_communis	pycom15g13250
rosa_chinensis	RchiOBHm_Chr2g0085171
rosa_laevigata	RLG00000015662
rosa_multiflora	Rmu_co8300831.1_g000001 Rmu_sc0008647.1_g000008
rosa_roxburghii	Rroxscaffold_2G00155590
rosa_rugosa	Rorug01G0458000
rosa_samantha	Rh2AG006400 Rh2BG007200 Rh2CG008000 Rh2DG008200
rosa_wichuraiana	Rw2G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	561, 787
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	2 cut(s)	286, 601
AgsI	TTSAA	5 cut(s)	200, 524, 570, 621, 842
AluBI	AGCT	3 cut(s)	219, 323, 483
AluI	AGCT	3 cut(s)	219, 323, 483
Alw26I	GTCTC	2 cut(s)	9, 670
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	753, 821
ApeKI	GCWGC	3 cut(s)	536, 806, 833
ApoI	RAATTY	2 cut(s)	561, 787
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	248
BauI	CACGAG	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	548, 818, 820
BccI	CCATC	1 cut(s)	419
BclI	TGATCA	2 cut(s)	382, 577
BcoDI	GTCTC	2 cut(s)	9, 670
BfaI	CTAG	5 cut(s)	222, 368, 405, 488, 707
BisI	GCNGC	3 cut(s)	537, 807, 834
BlsI	GCNGC	3 cut(s)	538, 808, 835
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	84, 822
BmsI	GCATC	1 cut(s)	769
BpmI	CTGGAG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	87, 750
BsaWI	WCCGGW	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	265, 299
BseDI	CCNNGG	2 cut(s)	87, 750
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	265, 299
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	548, 818, 820
BshFI	GGCC	2 cut(s)	755, 823
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	282, 308
BslFI	GGGAC	2 cut(s)	258, 600
BsmAI	GTCTC	2 cut(s)	9, 670
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	2 cut(s)	258, 600
BsmI	GAATGC	2 cut(s)	181, 283
BsnI	GGCC	2 cut(s)	755, 823
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	382, 415, 577
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	755, 823
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	84, 822
BspPI	GGATC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	265, 299
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	87, 750
BssMI	GATC	3 cut(s)	382, 415, 577
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	87, 750
Bst2BI	CACGAG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	78, 574
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	385, 418, 580
BstMAI	GTCTC	2 cut(s)	9, 670
BstMBI	GATC	3 cut(s)	382, 415, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	548, 818, 820
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	755, 823
BtgI	CCRYGG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	4 cut(s)	270, 451, 546, 781
Cac8I	GCNNGC	1 cut(s)	825
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	821
CseI	GACGC	2 cut(s)	371, 687
Csp6I	GTAC	2 cut(s)	285, 600
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	2 cut(s)	32, 88
CviJI	RGCY	7 cut(s)	219, 225, 323, 483, 638, 755, 823
CviKI_1	RGCY	7 cut(s)	219, 225, 323, 483, 638, 755, 823
CviQI	GTAC	2 cut(s)	285, 600
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	384, 417, 579
DpnII	GATC	3 cut(s)	382, 415, 577
EciI	GGCGGA	1 cut(s)	573
Eco130I	CCWWGG	2 cut(s)	87, 750
Eco147I	AGGCCT	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	87, 750
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	87, 750
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	2 cut(s)	35, 91
FaiI	YATR	5 cut(s)	33, 89, 155, 210, 317
FaqI	GGGAC	2 cut(s)	258, 600
FatI	CATG	2 cut(s)	31, 87
FbaI	TGATCA	2 cut(s)	382, 577
Fnu4HI	GCNGC	3 cut(s)	537, 807, 834
Fsp4HI	GCNGC	3 cut(s)	537, 807, 834
FspBI	CTAG	5 cut(s)	222, 368, 405, 488, 707
GluI	GCNGC	3 cut(s)	537, 807, 834
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	755, 823
HapII	CCGG	2 cut(s)	282, 308
HgaI	GACGC	2 cut(s)	371, 687
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	35, 91
HincII	GTYRAC	2 cut(s)	100, 667
HindII	GTYRAC	2 cut(s)	100, 667
HinfI	GANTC	4 cut(s)	17, 246, 344, 701
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	282, 308
Hpy166II	GTNNAC	5 cut(s)	100, 159, 258, 270, 667
Hpy188I	TCNGA	5 cut(s)	127, 151, 296, 361, 796
Hpy188III	TCNNGA	3 cut(s)	10, 168, 767
Hpy8I	GTNNAC	5 cut(s)	100, 159, 258, 270, 667
HpyAV	CCTTC	2 cut(s)	186, 733
HpyCH4III	ACNGT	2 cut(s)	78, 574
HpyCH4V	TGCA	4 cut(s)	4, 141, 536, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	35, 91
Ksp22I	TGATCA	2 cut(s)	382, 577
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	382, 415, 577
Lsp1109I	GCAGC	3 cut(s)	548, 818, 820
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	5 cut(s)	222, 368, 405, 488, 707
MaeIII	GTNAC	2 cut(s)	61, 623
MalI	GATC	3 cut(s)	384, 417, 579
MboI	GATC	3 cut(s)	382, 415, 577
MboII	GAAGA	4 cut(s)	156, 558, 738, 752
MfeI	CAATTG	2 cut(s)	386, 684
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	7 cut(s)	136, 386, 561, 590, 684, 733, 787
MlyI	GAGTC	2 cut(s)	11, 240
MnlI	CCTC	6 cut(s)	235, 244, 361, 406, 691, 774
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	5 cut(s)	99, 135, 531, 630, 732
MspI	CCGG	2 cut(s)	282, 308
MunI	CAATTG	2 cut(s)	386, 684
Mva1269I	GAATGC	2 cut(s)	181, 283
MwoI	GCNNNNNNNGC	1 cut(s)	833
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	382, 415, 577
NlaIII	CATG	2 cut(s)	35, 91
NlaIV	GGNNCC	2 cut(s)	84, 822
NmuCI	GTSAC	2 cut(s)	61, 623
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	755
PctI	GAATGC	2 cut(s)	181, 283
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	344, 701
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	538, 808, 835
PleI	GAGTC	2 cut(s)	11, 240
PpsI	GAGTC	2 cut(s)	11, 240
PspN4I	GGNNCC	2 cut(s)	84, 822
PspPI	GGNCC	1 cut(s)	821
PspXI	VCTCGAGB	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	286, 601
RsaNI	GTAC	2 cut(s)	285, 600
SaqAI	TTAA	5 cut(s)	99, 135, 531, 630, 732
SatI	GCNGC	3 cut(s)	537, 807, 834
Sau3AI	GATC	3 cut(s)	382, 415, 577
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	2 cut(s)	11, 240
SetI	ASST	8 cut(s)	197, 221, 325, 353, 406, 485, 598, 672
SfaNI	GCATC	1 cut(s)	769
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	136, 386, 561, 590, 684, 733, 787
SseBI	AGGCCT	1 cut(s)	755
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	5 cut(s)	222, 368, 405, 488, 707
StuI	AGGCCT	1 cut(s)	755
StyI	CCWWGG	2 cut(s)	87, 750
TaaI	ACNGT	2 cut(s)	78, 574
TaqI	TCGA	1 cut(s)	249
TasI	AATT	7 cut(s)	136, 386, 561, 590, 684, 733, 787
TfiI	GAWTC	2 cut(s)	344, 701
Tru1I	TTAA	5 cut(s)	99, 135, 531, 630, 732
Tru9I	TTAA	5 cut(s)	99, 135, 531, 630, 732
TscAI	CASTG	4 cut(s)	277, 451, 546, 781
TseFI	GTSAC	2 cut(s)	61, 623
TseI	GCWGC	3 cut(s)	536, 806, 833
Tsp45I	GTSAC	2 cut(s)	61, 623
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	4 cut(s)	277, 451, 546, 781
Tth111I	GACNNNGTC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	561, 787
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	5 cut(s)	222, 368, 405, 488, 707
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.