Rmu_co8311737.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8311737.1
OG0021672
Physical Location & Seq
Reverse (-)
1 .. 922
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8311737.1_g000001.1.cds

Sequence Viewer

Length: 286 bp
gccaaattgacttcccggctcggcggtctcaacctctcgcacacaactccggcaaagggttgaaattgtaccgaaatgagtctgtgtgctccacttctagtgtaatttgtgctgtcaatggaggtcagggagggtatgtctctgcgtgggacgagaaaccatatgagtttcttccgaatgggaaaagggcttacttagatgaacaagacgtggtcacattccttgatcctcctaaagagttgattcctttggactcggcttcttataatcctgctgcatatctttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.34

Weight (kDa)

5.21

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021672)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8311737.1_g000001 Rmu_sc0005609.1_g000008
rosa_rugosa Rorug03G0176700 Rorug03G0176700 Rorug03G0176800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 220
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 63
AjiI CACGTC 1 cut(s) 210
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 32, 144
AlwI GGATC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 261
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 32, 144
BfaI CTAG 1 cut(s) 98
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 16, 50
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 32, 144
BsmFI GGGAC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 32
BssMI GATC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 195
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 32, 144
BstMBI GATC 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 261
BtrI CACGTC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 3 cut(s) 19, 190, 259
CviKI_1 RGCY 3 cut(s) 19, 190, 259
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 32
FaiI YATR 5 cut(s) 137, 162, 164, 266, 279
FaqI GGGAC 1 cut(s) 163
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 275
HapII CCGG 2 cut(s) 16, 50
HinfI GANTC 3 cut(s) 79, 243, 253
HpaII CCGG 2 cut(s) 16, 50
Hpy188I TCNGA 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 209
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 29, 63, 112
Lsp1109I GCAGC 1 cut(s) 261
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 5, 64, 104
MlyI GAGTC 2 cut(s) 88, 247
MnlI CCTC 4 cut(s) 44, 115, 124, 239
MspI CCGG 2 cut(s) 16, 50
MspR9I CCNGG 1 cut(s) 16
NciI CCSGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 162
NdeII GATC 1 cut(s) 225
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 243
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 87, 247
PpsI GAGTC 2 cut(s) 87, 247
PsiI TTATAA 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 2 cut(s) 88, 247
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 91
SetI ASST 3 cut(s) 36, 126, 212
Sse9I AATT 3 cut(s) 5, 64, 104
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 14
TaiI ACGT 1 cut(s) 212
TasI AATT 3 cut(s) 5, 64, 104
TfiI GAWTC 1 cut(s) 243
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 215
Tth111I GACNNNGTC 1 cut(s) 211
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.