Rorug03G0176700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000731
Physical Location & Seq
Reverse (-)
15008951 .. 15011416
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0176700.1

Sequence Viewer

Length: 387 bp
ATGGGGGAGACTGGACTGGAGGAGAATACCCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAAAAAATGTCAGGGAGTGTGTTGGAAGTCTAAGATTGATCCAGGAAAAATATGATGCATTGAAAGCAGAGTTTGACAAGGATAGAGCATCAATTCAAGCAAAATATCTTCAATCATGTCAAACTTTGTACGCACAGATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTATGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAATGTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

128

Amino Acids

14.54

Weight (kDa)

7.65

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 103
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 3 cut(s) 133, 167, 182
AjnI CCWGG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 2 cut(s) 213, 340
AluI AGCT 2 cut(s) 213, 340
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 103
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 244, 355
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 2 cut(s) 341, 385
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 115, 167
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 16, 21
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 16, 21
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 108, 381
BspANI GGCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 103
BspQI GCTCTTC 1 cut(s) 330
BsrI ACTGG 2 cut(s) 16, 21
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 108, 381
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 2 cut(s) 111, 384
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 108, 381
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 199
CviAII CATG 1 cut(s) 186
CviJI RGCY 6 cut(s) 213, 254, 294, 323, 340, 370
CviKI_1 RGCY 6 cut(s) 213, 254, 294, 323, 340, 370
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 101
DpnI GATC 2 cut(s) 110, 383
DpnII GATC 2 cut(s) 108, 381
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 295
EcoT22I ATGCAT 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 189
FaiI YATR 4 cut(s) 123, 187, 311, 333
FatI CATG 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 341, 385
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 294
Hin1II CATG 1 cut(s) 189
HinfI GANTC 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 41, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 2 cut(s) 108, 381
LguI GCTCTTC 1 cut(s) 330
LpnPI CCDG 5 cut(s) 2, 67, 98, 125, 240
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 115, 167
MaeI CTAG 2 cut(s) 341, 385
MalI GATC 2 cut(s) 110, 383
MboI GATC 2 cut(s) 108, 381
MboII GAAGA 2 cut(s) 170, 347
MluCI AATT 2 cut(s) 52, 162
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 2 cut(s) 13, 68
Mph1103I ATGCAT 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 108, 381
NlaIII CATG 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 330
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 108, 381
Sau96I GGNCC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 113
SetI ASST 2 cut(s) 215, 342
SfaNI GCATC 2 cut(s) 115, 167
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 52, 162
SspI AATATT 1 cut(s) 317
SspMI CTAG 2 cut(s) 341, 385
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 295
TasI AATT 2 cut(s) 52, 162
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 326, 348
XspI CTAG 2 cut(s) 341, 385
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.