UPF0481 protein At3g47200-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TDBD | PF16135 | 125 - 182 | 1e-16 | Tify domain binding domain |
| PHD | PF00628 | 213 - 252 | 1.4e-07 | PHD-finger |
| IDM1_C | PF23209 | 369 - 507 | 9.1e-50 | Increased DNA methylation 1, C-terminal domain |
| MATH_2 | PF22486 | 545 - 668 | 1.6e-29 | MATH domain |
| MATH | PF00917 | 549 - 670 | 1.1e-10 | MATH domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 499 |
| Acc36I | ACCTGC | 1 cut(s) | 499 |
| Acc65I | GGTACC | 1 cut(s) | 1295 |
| AccB1I | GGYRCC | 2 cut(s) | 855, 1295 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1292 |
| AccBSI | CCGCTC | 1 cut(s) | 389 |
| AccI | GTMKAC | 1 cut(s) | 1752 |
| AciI | CCGC | 4 cut(s) | 389, 977, 1717, 2381 |
| AclWI | GGATC | 6 cut(s) | 21, 887, 1028, 1182, 1265, 1525 |
| AcoI | YGGCCR | 1 cut(s) | 772 |
| AcsI | RAATTY | 5 cut(s) | 1301, 1366, 2022, 2324, 2571 |
| AcuI | CTGAAG | 5 cut(s) | 1835, 2067, 2193, 2353, 2609 |
| AdeI | CACNNNGTG | 2 cut(s) | 770, 855 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1130, 1292, 1559, 1961, 2320, 2413 |
| AflII | CTTAAG | 1 cut(s) | 550 |
| AflIII | ACRYGT | 3 cut(s) | 1885, 1982, 2149 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 381, 1420, 1759 |
| AjnI | CCWGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2065, 2097 |
| AleI | CACNNNNGTG | 1 cut(s) | 1804 |
| Alw21I | GWGCWC | 3 cut(s) | 766, 1270, 2641 |
| Alw26I | GTCTC | 3 cut(s) | 1052, 1375, 1633 |
| Alw44I | GTGCAC | 1 cut(s) | 762 |
| AlwI | GGATC | 6 cut(s) | 21, 887, 1028, 1182, 1265, 1525 |
| Ama87I | CYCGRG | 1 cut(s) | 2411 |
| AoxI | GGCC | 5 cut(s) | 221, 772, 943, 1786, 2050 |
| ApaLI | GTGCAC | 1 cut(s) | 762 |
| ApeKI | GCWGC | 7 cut(s) | 453, 474, 494, 573, 1857, 2087, 2747 |
| ApoI | RAATTY | 5 cut(s) | 1301, 1366, 2022, 2324, 2571 |
| AseI | ATTAAT | 1 cut(s) | 1337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2594 |
| Asp718I | GGTACC | 1 cut(s) | 1295 |
| AspLEI | GCGC | 1 cut(s) | 1857 |
| AspS9I | GGNCC | 2 cut(s) | 48, 1787 |
| AsuHPI | GGTGA | 3 cut(s) | 746, 1631, 2340 |
| AsuII | TTCGAA | 1 cut(s) | 2784 |
| AvaI | CYCGRG | 1 cut(s) | 2411 |
| AvaII | GGWCC | 1 cut(s) | 48 |
| AxyI | CCTNAGG | 1 cut(s) | 860 |
| BaeGI | GKGCMC | 1 cut(s) | 766 |
| BalI | TGGCCA | 1 cut(s) | 774 |
| BanI | GGYRCC | 2 cut(s) | 855, 1295 |
| BanII | GRGCYC | 1 cut(s) | 2641 |
| BauI | CACGAG | 3 cut(s) | 210, 950, 1097 |
| BbsI | GAAGAC | 2 cut(s) | 2528, 2587 |
| Bbv12I | GWGCWC | 3 cut(s) | 766, 1270, 2641 |
| BbvCI | CCTCAGC | 2 cut(s) | 218, 688 |
| BbvI | GCAGC | 7 cut(s) | 440, 461, 506, 560, 1869, 2099, 2759 |
| BccI | CCATC | 6 cut(s) | 509, 647, 725, 1058, 1561, 1707 |
| BceAI | ACGGC | 3 cut(s) | 633, 1067, 2108 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 107, 141 |
| BciT130I | CCWGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| BciVI | GTATCC | 3 cut(s) | 170, 1492, 1740 |
| BcoDI | GTCTC | 3 cut(s) | 1052, 1375, 1633 |
| BfaI | CTAG | 7 cut(s) | 1079, 1412, 1472, 1538, 1812, 1956, 2019 |
| BfmI | CTRYAG | 8 cut(s) | 454, 475, 492, 574, 1242, 1463, 1749, 2271 |
| BfrI | CTTAAG | 1 cut(s) | 550 |
| BfuAI | ACCTGC | 1 cut(s) | 499 |
| BfuI | GTATCC | 3 cut(s) | 170, 1492, 1740 |
| BglII | AGATCT | 2 cut(s) | 1138, 2200 |
| BisI | GCNGC | 7 cut(s) | 454, 475, 495, 574, 1858, 2088, 2748 |
| BlpI | GCTNAGC | 1 cut(s) | 2736 |
| BlsI | GCNGC | 7 cut(s) | 455, 476, 496, 575, 1859, 2089, 2749 |
| BmcAI | AGTACT | 2 cut(s) | 1682, 2302 |
| Bme1390I | CCNGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| Bme18I | GGWCC | 1 cut(s) | 48 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 381, 1420, 1759 |
| BmeT110I | CYCGRG | 1 cut(s) | 2411 |
| BmgT120I | GGNCC | 2 cut(s) | 48, 1787 |
| BmiI | GGNNCC | 2 cut(s) | 857, 1297 |
| BmrFI | CCNGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| BmrI | ACTGGG | 3 cut(s) | 861, 1389, 2464 |
| BmuI | ACTGGG | 3 cut(s) | 861, 1389, 2464 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2123 |
| BpiI | GAAGAC | 2 cut(s) | 2528, 2587 |
| BpmI | CTGGAG | 3 cut(s) | 600, 2075, 2783 |
| Bpu10I | CCTNAGC | 2 cut(s) | 218, 688 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2736 |
| Bpu14I | TTCGAA | 1 cut(s) | 2784 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1179 |
| BsaJI | CCNNGG | 4 cut(s) | 1802, 1836, 2253, 2496 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1257, 1287, 1897, 1927 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1130, 1292, 1559, 1961, 2320, 2413 |
| Bse21I | CCTNAGG | 1 cut(s) | 860 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1179 |
| BseBI | CCWGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| BseDI | CCNNGG | 4 cut(s) | 1802, 1836, 2253, 2496 |
| BseGI | GGATG | 5 cut(s) | 358, 727, 1922, 2137, 2431 |
| BseJI | GATNNNNATC | 1 cut(s) | 1179 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1130, 1292, 1559, 1961, 2320, 2413 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseMII | CTCAG | 7 cut(s) | 209, 702, 851, 1047, 1469, 1840, 2172 |
| BseRI | GAGGAG | 1 cut(s) | 583 |
| BseSI | GKGCMC | 1 cut(s) | 766 |
| BseXI | GCAGC | 7 cut(s) | 440, 461, 506, 560, 1869, 2099, 2759 |
| BsgI | GTGCAG | 2 cut(s) | 257, 894 |
| BshFI | GGCC | 5 cut(s) | 223, 774, 945, 1788, 2052 |
| BshNI | GGYRCC | 2 cut(s) | 855, 1295 |
| BsiHKAI | GWGCWC | 3 cut(s) | 766, 1270, 2641 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2411 |
| BslFI | GGGAC | 5 cut(s) | 258, 388, 669, 1385, 2451 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1130, 1292, 1559, 1961, 2320, 2413 |
| BsmAI | GTCTC | 3 cut(s) | 1052, 1375, 1633 |
| BsmFI | GGGAC | 5 cut(s) | 258, 388, 669, 1385, 2451 |
| BsmI | GAATGC | 2 cut(s) | 692, 2453 |
| BsnI | GGCC | 5 cut(s) | 223, 774, 945, 1788, 2052 |
| BsoBI | CYCGRG | 1 cut(s) | 2411 |
| Bsp119I | TTCGAA | 1 cut(s) | 2784 |
| Bsp1286I | GDGCHC | 3 cut(s) | 766, 1270, 2641 |
| Bsp1407I | TGTACA | 1 cut(s) | 278 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2736 |
| Bsp19I | CCATGG | 1 cut(s) | 1836 |
| BspACI | CCGC | 4 cut(s) | 389, 977, 1717, 2381 |
| BspANI | GGCC | 5 cut(s) | 223, 774, 945, 1788, 2052 |
| BspCNI | CTCAG | 7 cut(s) | 210, 701, 852, 1048, 1468, 1839, 2173 |
| BspLI | GGNNCC | 2 cut(s) | 857, 1297 |
| BspMAI | CTGCAG | 5 cut(s) | 458, 479, 496, 578, 2275 |
| BspMI | ACCTGC | 1 cut(s) | 499 |
| BspPI | GGATC | 6 cut(s) | 21, 887, 1028, 1182, 1265, 1525 |
| BspT104I | TTCGAA | 1 cut(s) | 2784 |
| BspT107I | GGYRCC | 2 cut(s) | 855, 1295 |
| BspTI | CTTAAG | 1 cut(s) | 550 |
| BsrBI | CCGCTC | 1 cut(s) | 389 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BsrGI | TGTACA | 1 cut(s) | 278 |
| BssECI | CCNNGG | 4 cut(s) | 1802, 1836, 2253, 2496 |
| BssSI | CACGAG | 3 cut(s) | 210, 950, 1097 |
| BssT1I | CCWWGG | 2 cut(s) | 1836, 2496 |
| Bst2BI | CACGAG | 3 cut(s) | 210, 950, 1097 |
| Bst2UI | CCWGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| Bst6I | CTCTTC | 2 cut(s) | 560, 2781 |
| BstAFI | CTTAAG | 1 cut(s) | 550 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 408, 2270, 2492 |
| BstAUI | TGTACA | 1 cut(s) | 278 |
| BstBI | TTCGAA | 1 cut(s) | 2784 |
| BstC8I | GCNNGC | 5 cut(s) | 451, 754, 836, 1070, 2092 |
| BstDSI | CCRYGG | 1 cut(s) | 1836 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1959, 2318, 2411 |
| BstF5I | GGATG | 5 cut(s) | 358, 727, 1922, 2137, 2431 |
| BstHHI | GCGC | 1 cut(s) | 1857 |
| BstMAI | GTCTC | 3 cut(s) | 1052, 1375, 1633 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 148, 408, 921, 1274, 2096, 2270, 2492 |
| BstNI | CCWGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| BstNSI | RCATGY | 4 cut(s) | 453, 1889, 1986, 2039 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2123 |
| BstSCI | CCNGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| BstSFI | CTRYAG | 8 cut(s) | 454, 475, 492, 574, 1242, 1463, 1749, 2271 |
| BstSLI | GKGCMC | 1 cut(s) | 766 |
| BstV1I | GCAGC | 7 cut(s) | 440, 461, 506, 560, 1869, 2099, 2759 |
| BstV2I | GAAGAC | 2 cut(s) | 2528, 2587 |
| BstX2I | RGATCY | 4 cut(s) | 1138, 1257, 1530, 2200 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1806, 2048 |
| BstYI | RGATCY | 4 cut(s) | 1138, 1257, 1530, 2200 |
| Bsu36I | CCTNAGG | 1 cut(s) | 860 |
| BsuI | GTATCC | 3 cut(s) | 170, 1492, 1740 |
| BsuRI | GGCC | 5 cut(s) | 223, 774, 945, 1788, 2052 |
| BtgI | CCRYGG | 1 cut(s) | 1836 |
| BtsCI | GGATG | 5 cut(s) | 358, 727, 1922, 2137, 2431 |
| BtsI | GCAGTG | 1 cut(s) | 463 |
| BtsIMutI | CAGTG | 6 cut(s) | 463, 849, 1053, 1402, 1698, 2475 |
| BveI | ACCTGC | 1 cut(s) | 499 |
| Cac8I | GCNNGC | 5 cut(s) | 451, 754, 836, 1070, 2092 |
| CfoI | GCGC | 1 cut(s) | 1857 |
| Cfr13I | GGNCC | 2 cut(s) | 48, 1787 |
| CsiI | ACCWGGT | 1 cut(s) | 995 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 686, 721 |
| DraIII | CACNNNGTG | 2 cut(s) | 770, 855 |
| DriI | GACNNNNNGTC | 3 cut(s) | 381, 1420, 1759 |
| EaeI | YGGCCR | 1 cut(s) | 772 |
| Eam1104I | CTCTTC | 2 cut(s) | 560, 2781 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 381, 1420, 1759 |
| EarI | CTCTTC | 2 cut(s) | 560, 2781 |
| EciI | GGCGGA | 2 cut(s) | 1732, 2396 |
| Ecl136II | GAGCTC | 1 cut(s) | 2639 |
| Eco130I | CCWWGG | 2 cut(s) | 1836, 2496 |
| Eco147I | AGGCCT | 1 cut(s) | 945 |
| Eco24I | GRGCYC | 1 cut(s) | 2641 |
| Eco32I | GATATC | 1 cut(s) | 1153 |
| Eco47I | GGWCC | 1 cut(s) | 48 |
| Eco53kI | GAGCTC | 1 cut(s) | 2639 |
| Eco57I | CTGAAG | 5 cut(s) | 1835, 2067, 2193, 2353, 2609 |
| Eco81I | CCTNAGG | 1 cut(s) | 860 |
| Eco88I | CYCGRG | 1 cut(s) | 2411 |
| EcoICRI | GAGCTC | 1 cut(s) | 2639 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1959, 2318, 2411 |
| EcoRI | GAATTC | 1 cut(s) | 2022 |
| EcoRII | CCWGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| EcoRV | GATATC | 1 cut(s) | 1153 |
| EcoT14I | CCWWGG | 2 cut(s) | 1836, 2496 |
| EcoT22I | ATGCAT | 3 cut(s) | 451, 813, 1344 |
| EcoT38I | GRGCYC | 1 cut(s) | 2641 |
| ErhI | CCWWGG | 2 cut(s) | 1836, 2496 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 923, 955, 1953, 1985 |
| FaqI | GGGAC | 5 cut(s) | 258, 388, 669, 1385, 2451 |
| FauI | CCCGC | 2 cut(s) | 382, 970 |
| FauNDI | CATATG | 2 cut(s) | 2241, 2551 |
| FblI | GTMKAC | 1 cut(s) | 1752 |
| Fnu4HI | GCNGC | 7 cut(s) | 454, 475, 495, 574, 1858, 2088, 2748 |
| FokI | GGATG | 5 cut(s) | 345, 734, 1909, 2144, 2418 |
| FriOI | GRGCYC | 1 cut(s) | 2641 |
| Fsp4HI | GCNGC | 7 cut(s) | 454, 475, 495, 574, 1858, 2088, 2748 |
| FspBI | CTAG | 7 cut(s) | 1079, 1412, 1472, 1538, 1812, 1956, 2019 |
| GlaI | GCGC | 1 cut(s) | 1856 |
| GluI | GCNGC | 7 cut(s) | 454, 475, 495, 574, 1858, 2088, 2748 |
| GsuI | CTGGAG | 3 cut(s) | 600, 2075, 2783 |
| HaeIII | GGCC | 5 cut(s) | 223, 774, 945, 1788, 2052 |
| HhaI | GCGC | 1 cut(s) | 1857 |
| Hin6I | GCGC | 1 cut(s) | 1855 |
| HinP1I | GCGC | 1 cut(s) | 1855 |
| HindIII | AAGCTT | 1 cut(s) | 2738 |
| HphI | GGTGA | 3 cut(s) | 746, 1631, 2340 |
| Hpy166II | GTNNAC | 7 cut(s) | 48, 764, 1409, 1753, 1883, 2155, 2475 |
| Hpy8I | GTNNAC | 7 cut(s) | 48, 764, 1409, 1753, 1883, 2155, 2475 |
| Hpy99I | CGWCG | 1 cut(s) | 1317 |
| HpyCH4IV | ACGT | 1 cut(s) | 2151 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 148, 408, 921, 1274, 2096, 2270, 2492 |
| HpySE526I | ACGT | 1 cut(s) | 2151 |
| HspAI | GCGC | 1 cut(s) | 1855 |
| KpnI | GGTACC | 1 cut(s) | 1299 |
| LmnI | GCTCC | 4 cut(s) | 78, 570, 1265, 2674 |
| Lsp1109I | GCAGC | 7 cut(s) | 440, 461, 506, 560, 1869, 2099, 2759 |
| MabI | ACCWGGT | 1 cut(s) | 995 |
| MaeI | CTAG | 7 cut(s) | 1079, 1412, 1472, 1538, 1812, 1956, 2019 |
| MaeII | ACGT | 1 cut(s) | 2151 |
| MaeIII | GTNAC | 8 cut(s) | 247, 431, 479, 734, 999, 1907, 1944, 2116 |
| MbiI | CCGCTC | 1 cut(s) | 389 |
| MfeI | CAATTG | 2 cut(s) | 1417, 1706 |
| MflI | RGATCY | 4 cut(s) | 1138, 1257, 1530, 2200 |
| MhlI | GDGCHC | 3 cut(s) | 766, 1270, 2641 |
| MlsI | TGGCCA | 1 cut(s) | 774 |
| MluNI | TGGCCA | 1 cut(s) | 774 |
| MlyI | GAGTC | 2 cut(s) | 607, 2066 |
| MmeI | TCCRAC | 2 cut(s) | 864, 1152 |
| Mox20I | TGGCCA | 1 cut(s) | 774 |
| Mph1103I | ATGCAT | 3 cut(s) | 451, 813, 1344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2594 |
| MscI | TGGCCA | 1 cut(s) | 774 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1804, 1835 |
| Msp20I | TGGCCA | 1 cut(s) | 774 |
| MspA1I | CMGCKG | 1 cut(s) | 977 |
| MspCI | CTTAAG | 1 cut(s) | 550 |
| MspR9I | CCNGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| MunI | CAATTG | 2 cut(s) | 1417, 1706 |
| Mva1269I | GAATGC | 2 cut(s) | 692, 2453 |
| MvaI | CCWGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 148, 408, 921, 1274, 2096, 2270, 2492 |
| NcoI | CCATGG | 1 cut(s) | 1836 |
| NdeI | CATATG | 2 cut(s) | 2241, 2551 |
| NlaIV | GGNNCC | 2 cut(s) | 857, 1297 |
| NmuCI | GTSAC | 5 cut(s) | 431, 734, 999, 1907, 2116 |
| NsiI | ATGCAT | 3 cut(s) | 451, 813, 1344 |
| NspI | RCATGY | 4 cut(s) | 453, 1889, 1986, 2039 |
| NspV | TTCGAA | 1 cut(s) | 2784 |
| OliI | CACNNNNGTG | 1 cut(s) | 1804 |
| PaeI | GCATGC | 1 cut(s) | 453 |
| PaeR7I | CTCGAG | 1 cut(s) | 2411 |
| PaqCI | CACCTGC | 1 cut(s) | 499 |
| PceI | AGGCCT | 1 cut(s) | 945 |
| PciI | ACATGT | 2 cut(s) | 1885, 1982 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1761, 2157 |
| PctI | GAATGC | 2 cut(s) | 692, 2453 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2594 |
| PfeI | GAWTC | 9 cut(s) | 25, 463, 629, 1451, 1482, 1601, 1720, 1745, 2717 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1292 |
| PfoI | TCCNGGA | 1 cut(s) | 2127 |
| PkrI | GCNGC | 7 cut(s) | 455, 476, 496, 575, 1859, 2089, 2749 |
| PleI | GAGTC | 2 cut(s) | 607, 2065 |
| PpsI | GAGTC | 2 cut(s) | 607, 2065 |
| PscI | ACATGT | 2 cut(s) | 1885, 1982 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2123 |
| PshBI | ATTAAT | 1 cut(s) | 1337 |
| Psp124BI | GAGCTC | 1 cut(s) | 2641 |
| Psp6I | CCWGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| PspGI | CCWGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| PspN4I | GGNNCC | 2 cut(s) | 857, 1297 |
| PspPI | GGNCC | 2 cut(s) | 48, 1787 |
| PspXI | VCTCGAGB | 1 cut(s) | 2411 |
| PstI | CTGCAG | 5 cut(s) | 458, 479, 496, 578, 2275 |
| PsuI | RGATCY | 4 cut(s) | 1138, 1257, 1530, 2200 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1804, 1835 |
| SacI | GAGCTC | 1 cut(s) | 2641 |
| SatI | GCNGC | 7 cut(s) | 454, 475, 495, 574, 1858, 2088, 2748 |
| Sau96I | GGNCC | 2 cut(s) | 48, 1787 |
| ScaI | AGTACT | 2 cut(s) | 1682, 2302 |
| SchI | GAGTC | 2 cut(s) | 607, 2066 |
| ScrFI | CCNGG | 6 cut(s) | 618, 997, 1803, 2054, 2129, 2255 |
| SduI | GDGCHC | 3 cut(s) | 766, 1270, 2641 |
| SexAI | ACCWGGT | 1 cut(s) | 995 |
| SfcI | CTRYAG | 8 cut(s) | 454, 475, 492, 574, 1242, 1463, 1749, 2271 |
| Sfr274I | CTCGAG | 1 cut(s) | 2411 |
| SfuI | TTCGAA | 1 cut(s) | 2784 |
| SinI | GGWCC | 1 cut(s) | 48 |
| SlaI | CTCGAG | 1 cut(s) | 2411 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1804, 1835 |
| SmlI | CTYRAG | 2 cut(s) | 550, 2411 |
| SmoI | CTYRAG | 2 cut(s) | 550, 2411 |
| SphI | GCATGC | 1 cut(s) | 453 |
| SseBI | AGGCCT | 1 cut(s) | 945 |
| SsiI | CCGC | 4 cut(s) | 389, 977, 1717, 2381 |
| SspI | AATATT | 2 cut(s) | 502, 2002 |
| SspMI | CTAG | 7 cut(s) | 1079, 1412, 1472, 1538, 1812, 1956, 2019 |
| SstI | GAGCTC | 1 cut(s) | 2641 |
| StuI | AGGCCT | 1 cut(s) | 945 |
| StyD4I | CCNGG | 6 cut(s) | 616, 995, 1801, 2052, 2127, 2253 |
| StyI | CCWWGG | 2 cut(s) | 1836, 2496 |
| TaiI | ACGT | 1 cut(s) | 2154 |
| TaqI | TCGA | 7 cut(s) | 385, 1315, 1992, 2160, 2316, 2412, 2784 |
| TatI | WGTACW | 6 cut(s) | 278, 331, 341, 638, 1680, 2300 |
| TfiI | GAWTC | 9 cut(s) | 25, 463, 629, 1451, 1482, 1601, 1720, 1745, 2717 |
| TscAI | CASTG | 6 cut(s) | 463, 856, 1060, 1402, 1705, 2482 |
| TseFI | GTSAC | 5 cut(s) | 431, 734, 999, 1907, 2116 |
| TseI | GCWGC | 7 cut(s) | 453, 474, 494, 573, 1857, 2087, 2747 |
| Tsp45I | GTSAC | 5 cut(s) | 431, 734, 999, 1907, 2116 |
| TspDTI | ATGAA | 5 cut(s) | 1202, 1245, 1379, 1474, 1541 |
| TspGWI | ACGGA | 4 cut(s) | 1463, 1752, 1753, 2233 |
| TspRI | CASTG | 6 cut(s) | 463, 856, 1060, 1402, 1705, 2482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1292 |
| Vha464I | CTTAAG | 1 cut(s) | 550 |
| VneI | GTGCAC | 1 cut(s) | 762 |
| VpaK11BI | GGWCC | 1 cut(s) | 48 |
| VspI | ATTAAT | 1 cut(s) | 1337 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1959, 2318, 2411 |
| XapI | RAATTY | 5 cut(s) | 1301, 1366, 2022, 2324, 2571 |
| XbaI | TCTAGA | 2 cut(s) | 1471, 1811 |
| XceI | RCATGY | 4 cut(s) | 453, 1889, 1986, 2039 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 735, 903 |
| XhoI | CTCGAG | 1 cut(s) | 2411 |
| XmiI | GTMKAC | 1 cut(s) | 1752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2594 |
| XspI | CTAG | 7 cut(s) | 1079, 1412, 1472, 1538, 1812, 1956, 2019 |
| ZrmI | AGTACT | 2 cut(s) | 1682, 2302 |
| Zsp2I | ATGCAT | 3 cut(s) | 451, 813, 1344 |