Rw5G011410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000731
Physical Location & Seq
Forward (+)
12994936 .. 12995595
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011410.1

Sequence Viewer

Length: 630 bp
ATGCAAAGAGGTAGAACTGCAAGTCTAAAAGGGCAAATCGAAAACCTCAAGGTCCGTGGATTCTGTGTGGAGAGACGAAAGGATGGCAACCAGCCTAGAAGACATCGCACTATAGTCATGGATCCGCCTTTTTATAAAAGGCTGAAAATTATGGGGGATCAAGAACAGATTTTGAGTATACTGACGGAACTTTATATCATTTCCGAAGTGAAGTCAACTCTTGGCGCAAAGGTAGAAGACACATGGAGAGCATTTGTTGAGACTATGAAAGGGAGAGCTAATACTTCCTCCGATTCTTACTTGAAACAGGAACTCGAGAAAATGGAGAAATGGTTGGACCATGTAGAGCCTTTGGCAAAAGAAATATATCAGGTTCTGGTTGTTCGTCACGGACAGAAAGTCTCTAAGCCTCAAGGAGAACATCATTTTGAAATTCTTCCCAACAGTTTTGGTTCGATTCTGATTAAGCTCTCAAAGCTTCGGTTGAAAGCTATTGCATCCTTGGAGCATGGAAACTTGTTGGATGACTTGGACAAGCGAGAACTTGATTATGTAGAGACCTTGATCAAGGAAGTACACAACTTTGTGGTCGTTCAGCAAGTACTGCTAGAATACTTTGGACACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.31

Weight (kDa)

9.04

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 125
AclWI GGATC 3 cut(s) 116, 129, 165
AcsI RAATTY 1 cut(s) 432
AfaI GTAC 2 cut(s) 576, 603
AgsI TTSAA 3 cut(s) 304, 431, 487
AhdI GACNNNNNGTC 1 cut(s) 398
AluBI AGCT 4 cut(s) 278, 469, 478, 491
AluI AGCT 4 cut(s) 278, 469, 478, 491
Alw26I GTCTC 4 cut(s) 67, 254, 406, 551
AlwI GGATC 3 cut(s) 116, 129, 165
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 314
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 435
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 52, 337
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 2 cut(s) 52, 337
BamHI GGATCC 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 106, 243
BccI CCATC 1 cut(s) 77
BclI TGATCA 1 cut(s) 564
BcoDI GTCTC 4 cut(s) 67, 254, 406, 551
BfaI CTAG 2 cut(s) 96, 608
BfmI CTRYAG 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 603
Bme18I GGWCC 2 cut(s) 52, 337
BmeRI GACNNNNNGTC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 52, 337
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 506
BpiI GAAGAC 2 cut(s) 106, 243
BpuEI CTTGAG 2 cut(s) 32, 396
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 55, 501
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse1I ACTGG 1 cut(s) 625
BseDI CCNNGG 2 cut(s) 55, 501
BseGI GGATG 3 cut(s) 88, 497, 529
BseNI ACTGG 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 314
BsmAI GTCTC 4 cut(s) 67, 254, 406, 551
BsmBI CGTCTC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 3 cut(s) 121, 157, 564
BspACI CCGC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 3 cut(s) 116, 129, 165
BspTNI GGTCTC 1 cut(s) 551
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 2 cut(s) 55, 501
BssMI GATC 3 cut(s) 121, 157, 564
BssNAI GTATAC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 604
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 3 cut(s) 88, 497, 529
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 3 cut(s) 124, 160, 567
BstMAI GTCTC 4 cut(s) 67, 254, 406, 551
BstMBI GATC 3 cut(s) 121, 157, 564
BstMWI GCNNNNNNNGC 2 cut(s) 475, 604
BstSFI CTRYAG 1 cut(s) 111
BstV2I GAAGAC 2 cut(s) 106, 243
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 3 cut(s) 88, 497, 529
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 52, 337
Csp6I GTAC 2 cut(s) 575, 602
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 118, 243, 341, 509
CviJI RGCY 8 cut(s) 94, 142, 278, 349, 409, 469, 478, 491
CviKI_1 RGCY 8 cut(s) 94, 142, 278, 349, 409, 469, 478, 491
CviQI GTAC 2 cut(s) 575, 602
DdeI CTNAG 1 cut(s) 405
DpnI GATC 3 cut(s) 123, 159, 566
DpnII GATC 3 cut(s) 121, 157, 564
DriI GACNNNNNGTC 1 cut(s) 398
Eam1105I GACNNNNNGTC 1 cut(s) 398
EciI GGCGGA 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 52, 337
Eco88I CYCGRG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 4 cut(s) 121, 246, 344, 512
FatI CATG 4 cut(s) 117, 242, 340, 508
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 1 cut(s) 178
FokI GGATG 3 cut(s) 95, 484, 536
FspBI CTAG 2 cut(s) 96, 608
GlaI GCGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 121, 246, 344, 512
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 60, 293, 457
Hpy166II GTNNAC 3 cut(s) 179, 216, 577
Hpy188I TCNGA 3 cut(s) 205, 292, 462
Hpy188III TCNNGA 2 cut(s) 161, 316
Hpy8I GTNNAC 3 cut(s) 179, 216, 577
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 4, 20, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 475, 604
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 4 cut(s) 121, 246, 344, 512
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 3 cut(s) 121, 157, 564
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 4 cut(s) 104, 293, 356, 362
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 96, 608
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 123, 159, 566
MboI GATC 3 cut(s) 121, 157, 564
MboII GAAGA 3 cut(s) 111, 248, 428
MflI RGATCY 1 cut(s) 121
MluCI AATT 2 cut(s) 147, 432
MmeI TCCRAC 2 cut(s) 315, 501
MnlI CCTC 3 cut(s) 56, 298, 420
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 475, 604
NdeII GATC 3 cut(s) 121, 157, 564
NlaIII CATG 4 cut(s) 121, 246, 344, 512
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 3 cut(s) 60, 293, 457
PsiI TTATAA 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 52, 337
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 576, 603
RsaNI GTAC 2 cut(s) 575, 602
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 3 cut(s) 121, 157, 564
Sau96I GGNCC 2 cut(s) 52, 337
ScaI AGTACT 1 cut(s) 603
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 2 cut(s) 52, 337
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 3 cut(s) 47, 314, 411
SmoI CTYRAG 3 cut(s) 47, 314, 411
Sse9I AATT 2 cut(s) 147, 432
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 96, 608
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 3 cut(s) 39, 315, 455
TasI AATT 2 cut(s) 147, 432
TatI WGTACW 2 cut(s) 574, 601
TfiI GAWTC 3 cut(s) 60, 293, 457
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 3 cut(s) 44, 200, 405
VpaK11BI GGWCC 2 cut(s) 52, 337
XapI RAATTY 1 cut(s) 432
XhoI CTCGAG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 96, 608
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.