Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000731

Physical Location & Seq

Genomic Coordinates Reverse (-)

15044245 .. 15045974

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGACACAACAATGTTGGTACCGCCATGGCTGGAGCAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGTACTCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCCGCTCCTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGGGTTTCGGAGATACAAAAGGTTCTGGACATTAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTCTGTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGCTTGTGGGAATAAAGAGGAATGGGGATGCCAACTTTACATTGGAGGCAAGGAATGAAGAGGGAAATGGAAATGGAACAAGAGAAGGAATGATAACATCATCAACAACAAGGAGAGTGACAATGGGGGAGGAGGAGTTGCGTGAAGGCTCACAACAAGACATGTACCCGGACACGCCTCCACCACCTCCTTCTTCAACTACAAGGAGAAGGAAAGGCATTCCTCATAGGGCACCATTTGGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

8.56

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLATZ	PF04640	64 - 136	2.6e-30	PLATZ transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04610 FvH4_1g04610 FvH4_3g11030 FvH4_3g11030 FvH4_3g11040 FvH4_6g11790 FvH4_6g11790
prunus_persica	Prupe.6G273200_v2.0.a1 Prupe.6G273300_v2.0.a1 Prupe.6G273400_v2.0.a1 Prupe.6G273700_v2.0.a1 Prupe.6G273800_v2.0.a1 Prupe.6G274100_v2.0.a1 Prupe.6G274200_v2.0.a1 Prupe.6G274200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479631 RchiOBHm_Chr3g0479741 RchiOBHm_Chr5g0017731 RchiOBHm_Chr5g0017741
rosa_laevigata	RLG00000003409 RLG00000023552 RLG00000023554 RLG00000023555 RLG00000023557 RLG00000024775 RLG00000032310
rosa_multiflora	Rmu_sc0001775.1_g000001 Rmu_sc0001775.1_g000014 Rmu_sc0002232.1_g000010 Rmu_sc0002669.1_g000040 Rmu_sc0003254.1_g000006 Rmu_sc0003755.1_g000001 Rmu_sc0009555.1_g000006 Rmu_sc0009555.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059750 Rroxscaffold_1G00059760 Rroxscaffold_3G00252610 Rroxscaffold_6G00402110
rosa_rugosa	Rorug03G0176700 Rorug03G0177000 Rorug05G0038000 Rorug05G0038100 Rorug05G0038200 Rorug05G0038400 Rorug06G0046200
rosa_samantha	Rh3AG228700 Rh3BG127800 Rh3BG260600 Rh3BG260900 Rh3CG257600 Rh3CG258000 Rh3DG254100 Rh5AG131300 Rh5AG131400 Rh5AG131500 Rh5AG131600 Rh5BG129100 Rh5BG129200 Rh5BG129500 Rh5CG141500 Rh5CG141600 Rh5CG141800 Rh5DG131100 Rh5DG131200 Rh5DG131300 Rh5DG131400
rosa_wichuraiana	Rw0G010540 Rw3G020330 Rw3G020370 Rw5G011390 Rw5G011400 Rw5G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	19, 634
AccB7I	CCANNNNNTGG	2 cut(s)	211, 320
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	3 cut(s)	23, 123, 151
AclWI	GGATC	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	21, 73, 569
AfiI	CCNNNNNNNGG	2 cut(s)	211, 320
AflIII	ACRYGT	2 cut(s)	105, 564
AgsI	TTSAA	2 cut(s)	298, 600
AjnI	CCWGG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	320, 406
AluI	AGCT	2 cut(s)	320, 406
AlwI	GGATC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	305, 364
ApeKI	GCWGC	1 cut(s)	86
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	373, 645
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	52, 226
AvaII	GGWCC	2 cut(s)	373, 645
BaeGI	GKGCMC	1 cut(s)	637
BanI	GGYRCC	2 cut(s)	19, 634
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	54, 94
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	2 cut(s)	87, 151
BlsI	GCNGC	2 cut(s)	88, 152
Bme1390I	CCNGG	2 cut(s)	91, 572
Bme18I	GGWCC	2 cut(s)	373, 645
BmgT120I	GGNCC	2 cut(s)	373, 645
BmiI	GGNNCC	4 cut(s)	21, 375, 636, 646
BmrFI	CCNGG	2 cut(s)	91, 572
BmsI	GCATC	2 cut(s)	121, 421
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	53, 142
BpuMI	CCSGG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	26
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 320
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	211, 320
BseRI	GAGGAG	3 cut(s)	145, 548, 551
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	307, 366
BshNI	GGYRCC	2 cut(s)	19, 634
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	211, 320
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	2 cut(s)	104, 621
BsnI	GGCC	2 cut(s)	307, 366
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	3 cut(s)	23, 123, 151
BspANI	GGCC	2 cut(s)	307, 366
BspLI	GGNNCC	4 cut(s)	21, 375, 636, 646
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	2 cut(s)	19, 634
BsrBI	CCGCTC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 147
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	109, 568
BstSCI	CCNGG	2 cut(s)	89, 570
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	307, 366
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	373, 645
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	20, 72, 568
CviAII	CATG	4 cut(s)	27, 106, 206, 565
CviJI	RGCY	7 cut(s)	31, 89, 307, 320, 366, 406, 552
CviKI_1	RGCY	7 cut(s)	31, 89, 307, 320, 366, 406, 552
CviQI	GTAC	3 cut(s)	20, 72, 568
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	2 cut(s)	307, 366
Eco47I	GGWCC	2 cut(s)	373, 645
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	4 cut(s)	30, 109, 209, 568
FaiI	YATR	6 cut(s)	28, 107, 207, 267, 566, 630
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	4 cut(s)	26, 105, 205, 564
Fnu4HI	GCNGC	2 cut(s)	87, 151
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	87, 151
GluI	GCNGC	2 cut(s)	87, 151
GsuI	CTGGAG	2 cut(s)	53, 142
HaeIII	GGCC	2 cut(s)	307, 366
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	30, 109, 209, 568
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	324, 333, 384
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	2 cut(s)	52, 226
Hpy188I	TCNGA	2 cut(s)	226, 261
Hpy188III	TCNNGA	4 cut(s)	159, 184, 242, 295
Hpy99I	CGWCG	2 cut(s)	55, 86
HpyAV	CCTTC	4 cut(s)	482, 542, 603, 606
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	102, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 147
Hsp92II	CATG	4 cut(s)	30, 109, 209, 568
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	34, 158
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	121, 421
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	182
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	49, 189, 473, 588
MhlI	GDGCHC	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	136
MslI	CAYNNNNRTG	2 cut(s)	11, 345
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	91, 572
Mva1269I	GAATGC	2 cut(s)	104, 621
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	120, 147
NciI	CCSGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	4 cut(s)	30, 109, 209, 568
NlaIV	GGNNCC	4 cut(s)	21, 375, 636, 646
NmuCI	GTSAC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	109, 568
OliI	CACNNNNGTG	1 cut(s)	345
PceI	AGGCCT	2 cut(s)	307, 366
PciI	ACATGT	2 cut(s)	105, 564
PctI	GAATGC	2 cut(s)	104, 621
PfeI	GAWTC	2 cut(s)	324, 384
PflFI	GACNNNGTC	1 cut(s)	49
PflMI	CCANNNNNTGG	2 cut(s)	211, 320
PkrI	GCNGC	2 cut(s)	88, 152
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	645
PscI	ACATGT	2 cut(s)	105, 564
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	21, 375, 636, 646
PspPI	GGNCC	2 cut(s)	373, 645
PspPPI	RGGWCCY	1 cut(s)	645
PstNI	CAGNNNCTG	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	49
RsaI	GTAC	3 cut(s)	21, 73, 569
RsaNI	GTAC	3 cut(s)	20, 72, 568
RseI	CAYNNNNRTG	2 cut(s)	11, 345
SatI	GCNGC	2 cut(s)	87, 151
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	373, 645
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	91, 572
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	8 cut(s)	50, 197, 240, 266, 322, 408, 592, 650
SfaNI	GCATC	2 cut(s)	121, 421
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	373, 645
SmiMI	CAYNNNNRTG	2 cut(s)	11, 345
SseBI	AGGCCT	2 cut(s)	307, 366
SsiI	CCGC	3 cut(s)	23, 123, 151
StuI	AGGCCT	2 cut(s)	307, 366
StyD4I	CCNGG	2 cut(s)	89, 570
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	382
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	324, 384
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	49
Van91I	CCANNNNNTGG	2 cut(s)	211, 320
VpaK11BI	GGWCC	2 cut(s)	373, 645
XceI	RCATGY	2 cut(s)	109, 568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.