Rh5CG141500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000731
Physical Location & Seq
Forward (+)
12506900 .. 12508822
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG141500.1

Sequence Viewer

Length: 1356 bp
ATGGAGGAAATTAAATATGCTAAGATGAGCGATTCTGGAGATGAAATTCAGGAACCCAGGGGAGATCTACAGAAACGGAAAGATAGGTGGAAGAAAGGGATCATTGATAAGATCAGCAGAACAAATTTGACAAAGTCGCAATCAAAAGATCAAGAAGACACTGAAGCTTCTTGGCGGTGTTTAGAAGCGTGCATCAATGTTATCTATGGATTAGACGAAGTGATTCGTCAATGCTATGCTGAGAAGATCAACTGCACAGAGGATGAGCTTGCAGAAATAATGTTGGTCGATGGTTGCTTCATTCTGGAACTTTTCCTCAGGTTTGACCGAAGCTTAAATTATATGAAGCTTGAAGATTTTGGAATTGATCCAGTACTAAAAAGTCCTTGGATGATCACAGCTCTTCAGCACGATCTTGGATTACTCGAAAACCAAATCCCATTTTTCATTCTTGAACTTCTGTATTATACTATCATGCCTCATGTCATCAATGTCATCAAGTGTGAACCACCGAAATCGGTGACTAGCCTTGCTCTTAAATTCTTTCCACCTATGAGCCAAAAGTCGATAGAAAAAGAGCAGGTGGCGGCAGAGTTTAAGCATTTGCTTGATCTTTTGCATCAATTCTACTACCTCCCAGCTGCAGCTACTGGAGCTCGTGACCTGTCTATCGAGTTCAACGATAGAGCGTCTCTGACTTCTGAGAACGAGCATCGTTCTGCTTCTGCACTATGCAGTCGTGAACTTGATGATCAAGCAACCAATAAAAGTTCGGGATTCAGTTGTTGCGCTTCAGAGCTACTCGAGTCTGGAATTGAGTTCCAAGTCAGGTCAAGTACCGAGGACCAACTGCTGGAAATAACTTTCAGTGAGGGAGTTATCAGAATTCCCCAACTGTACATTCATGAGACCTCCCGTTCACTCTTCAGGAATCTCATTGCTTTCGAGCAATGCAGTATTAGCAGTACCCATGGCGTTACAGCATTCGCCTTCCTTATGGAGAGTCTCATCCGTTCCACGCAAGACATAAATCTGTTCACGAGGAAAAAGATCTTTAGGCACAACTGGATCGGCAGTCAAGAATATTCTACTGCACTGAGAGACACTCTGAAGAAAGTCGTTACCAAGAACGATTCATATTTTGCTACATTATACAAGGAAGTCAATGACTACCGTAAGTCGTACCAGTGGAGCAGACTTCAAGTCTTTTTGAGGGTGCAATATCAAAGACAAAGAGGGATCCTTTGTACTACTTATTTCTCTACTACATGGAAAGTCATATCACTCCTGGTTGCGGTGACCTTTCTCCTTCTCAGTGCCATACAGACGTACTATACAATTAACCCTCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

451

Amino Acids

52.22

Weight (kDa)

5.89

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 59 - 438 4.5e-78 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
Acc36I ACCTGC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 853
AciI CCGC 3 cut(s) 175, 587, 1295
AclWI GGATC 5 cut(s) 107, 362, 1076, 1234, 1247
AcsI RAATTY 4 cut(s) 45, 124, 539, 885
AcuI CTGAAG 5 cut(s) 183, 389, 777, 910, 1130
AfaI GTAC 7 cut(s) 375, 838, 899, 967, 1184, 1249, 1331
AfiI CCNNNNNNNGG 2 cut(s) 853, 1294
AgsI TTSAA 4 cut(s) 353, 455, 679, 1202
AhdI GACNNNNNGTC 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 56, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 9 cut(s) 167, 268, 333, 349, 401, 641, 647, 656, 799
AluI AGCT 9 cut(s) 167, 268, 333, 349, 401, 641, 647, 656, 799
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 4 cut(s) 696, 902, 1010, 1095
AlwI GGATC 5 cut(s) 107, 362, 1076, 1234, 1247
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 641, 644
ApoI RAATTY 4 cut(s) 45, 124, 539, 885
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 844
AsuHPI GGTGA 3 cut(s) 532, 1309, 1340
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 1 cut(s) 844
AxyI CCTNAGG 1 cut(s) 317
BamHI GGATCC 1 cut(s) 1239
BanII GRGCYC 1 cut(s) 658
BauI CACGAG 2 cut(s) 657, 1039
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 2 cut(s) 628, 656
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 58, 1289
BclI TGATCA 2 cut(s) 393, 751
BcoDI GTCTC 4 cut(s) 696, 902, 1010, 1095
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 68, 642
BfuAI ACCTGC 1 cut(s) 571
BglII AGATCT 2 cut(s) 64, 1050
BisI GCNGC 3 cut(s) 588, 642, 645
BlsI GCNGC 3 cut(s) 589, 643, 646
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 58, 1289
Bme18I GGWCC 1 cut(s) 844
BmeRI GACNNNNNGTC 1 cut(s) 1202
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 2 cut(s) 54, 1241
BmrFI CCNGG 2 cut(s) 58, 1289
BmsI GCATC 3 cut(s) 201, 628, 721
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 1090, 1122
BpmI CTGGAG 2 cut(s) 57, 672
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 5 cut(s) 56, 57, 386, 840, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 853, 1294
Bse1I ACTGG 4 cut(s) 371, 655, 1070, 1186
Bse21I CCTNAGG 1 cut(s) 317
Bse3DI GCAATG 2 cut(s) 936, 956
BseBI CCWGG 2 cut(s) 58, 1289
BseDI CCNNGG 5 cut(s) 56, 57, 386, 840, 970
BseGI GGATG 3 cut(s) 268, 396, 1008
BseLI CCNNNNNNNGG 2 cut(s) 853, 1294
BseMI GCAATG 2 cut(s) 936, 956
BseMII CTCAG 5 cut(s) 231, 331, 693, 1088, 1327
BseNI ACTGG 4 cut(s) 371, 655, 1070, 1186
BseXI GCAGC 2 cut(s) 628, 656
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 3 cut(s) 238, 711, 1077
BsiHKAI GWGCWC 1 cut(s) 658
BsiHKCI CYCGRG 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 853, 1294
BsmAI GTCTC 4 cut(s) 696, 902, 1010, 1095
BsmBI CGTCTC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 983
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 658
Bsp1407I TGTACA 1 cut(s) 897
Bsp19I CCATGG 1 cut(s) 970
BspACI CCGC 3 cut(s) 175, 587, 1295
BspCNI CTCAG 5 cut(s) 232, 330, 694, 1089, 1326
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 54, 1241
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 5 cut(s) 107, 362, 1076, 1234, 1247
BspQI GCTCTTC 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 2 cut(s) 936, 956
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 4 cut(s) 371, 655, 1070, 1186
BssECI CCNNGG 5 cut(s) 56, 57, 386, 840, 970
BssSI CACGAG 2 cut(s) 657, 1039
BssT1I CCWWGG 2 cut(s) 386, 970
Bst2BI CACGAG 2 cut(s) 657, 1039
Bst2UI CCWGG 2 cut(s) 58, 1289
Bst4CI ACNGT 2 cut(s) 897, 1175
Bst6I CTCTTC 2 cut(s) 408, 929
BstAUI TGTACA 1 cut(s) 897
BstC8I GCNNGC 2 cut(s) 190, 270
BstDEI CTNAG 6 cut(s) 21, 240, 317, 702, 1097, 1313
BstDSI CCRYGG 1 cut(s) 970
BstEII GGTNACC 1 cut(s) 1297
BstF5I GGATG 3 cut(s) 268, 396, 1008
BstHHI GCGC 1 cut(s) 791
BstMAI GTCTC 4 cut(s) 696, 902, 1010, 1095
BstMWI GCNNNNNNNGC 2 cut(s) 653, 960
BstNI CCWGG 2 cut(s) 58, 1289
BstPI GGTNACC 1 cut(s) 1297
BstSCI CCNGG 2 cut(s) 56, 1287
BstSFI CTRYAG 2 cut(s) 68, 642
BstV1I GCAGC 2 cut(s) 628, 656
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 3 cut(s) 64, 1050, 1239
BstYI RGATCY 3 cut(s) 64, 1050, 1239
Bsu36I CCTNAGG 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 970
BtsCI GGATG 3 cut(s) 268, 396, 1008
BtsIMutI CAGTG 6 cut(s) 159, 874, 1094, 1193, 1321, 1351
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 190, 270
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 904
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 844
CseI GACGC 1 cut(s) 678
Csp6I GTAC 7 cut(s) 374, 837, 898, 966, 1183, 1248, 1330
CviAII CATG 5 cut(s) 475, 482, 905, 971, 1269
CviQI GTAC 7 cut(s) 374, 837, 898, 966, 1183, 1248, 1330
DdeI CTNAG 6 cut(s) 21, 240, 317, 702, 1097, 1313
DriI GACNNNNNGTC 1 cut(s) 1202
Eam1104I CTCTTC 2 cut(s) 408, 929
Eam1105I GACNNNNNGTC 1 cut(s) 1202
EarI CTCTTC 2 cut(s) 408, 929
Ecl136II GAGCTC 1 cut(s) 656
Eco130I CCWWGG 2 cut(s) 386, 970
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 1 cut(s) 844
Eco53kI GAGCTC 1 cut(s) 656
Eco57I CTGAAG 5 cut(s) 183, 389, 777, 910, 1130
Eco81I CCTNAGG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 803
Eco91I GGTNACC 1 cut(s) 1297
EcoICRI GAGCTC 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 1297
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 56, 1287
EcoT14I CCWWGG 2 cut(s) 386, 970
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 386, 970
Esp3I CGTCTC 1 cut(s) 696
FaeI CATG 5 cut(s) 478, 485, 908, 974, 1272
FatI CATG 5 cut(s) 474, 481, 904, 970, 1268
FbaI TGATCA 2 cut(s) 393, 751
Fnu4HI GCNGC 3 cut(s) 588, 642, 645
FokI GGATG 3 cut(s) 275, 403, 995
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 3 cut(s) 588, 642, 645
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 790
GluI GCNGC 3 cut(s) 588, 642, 645
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 2 cut(s) 57, 672
HgaI GACGC 1 cut(s) 678
HhaI GCGC 1 cut(s) 791
Hin1II CATG 5 cut(s) 478, 485, 908, 974, 1272
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HindIII AAGCTT 3 cut(s) 165, 331, 347
HinfI GANTC 7 cut(s) 32, 223, 777, 806, 931, 1003, 1133
HphI GGTGA 3 cut(s) 532, 1309, 1340
Hpy166II GTNNAC 4 cut(s) 506, 743, 920, 1038
Hpy188I TCNGA 5 cut(s) 696, 703, 796, 884, 1110
Hpy8I GTNNAC 4 cut(s) 506, 743, 920, 1038
HpyAV CCTTC 2 cut(s) 1000, 1319
HpyCH4III ACNGT 2 cut(s) 897, 1175
HpyCH4IV ACGT 1 cut(s) 1328
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 960
HpyF3I CTNAG 6 cut(s) 21, 240, 317, 702, 1097, 1313
HpySE526I ACGT 1 cut(s) 1328
Hsp92II CATG 5 cut(s) 478, 485, 908, 974, 1272
HspAI GCGC 1 cut(s) 789
Ksp22I TGATCA 2 cut(s) 393, 751
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 653, 1191
Lsp1109I GCAGC 2 cut(s) 628, 656
LweI GCATC 3 cut(s) 201, 628, 721
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 1328
MaeIII GTNAC 5 cut(s) 520, 659, 976, 1120, 1297
MboII GAAGA 7 cut(s) 103, 167, 256, 365, 395, 916, 1123
MflI RGATCY 3 cut(s) 64, 1050, 1239
MhlI GDGCHC 1 cut(s) 658
MlyI GAGTC 2 cut(s) 815, 1012
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 5 cut(s) 12, 335, 537, 597, 1341
MspA1I CMGCKG 1 cut(s) 641
MspR9I CCNGG 2 cut(s) 58, 1289
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 2 cut(s) 58, 1289
MwoI GCNNNNNNNGC 2 cut(s) 653, 960
NcoI CCATGG 1 cut(s) 970
NlaIII CATG 5 cut(s) 478, 485, 908, 974, 1272
NlaIV GGNNCC 2 cut(s) 54, 1241
NmuCI GTSAC 3 cut(s) 520, 659, 1297
PaeR7I CTCGAG 1 cut(s) 803
PagI TCATGA 1 cut(s) 904
PaqCI CACCTGC 1 cut(s) 571
PasI CCCWGGG 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 678
PctI GAATGC 1 cut(s) 983
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 5 cut(s) 32, 223, 777, 931, 1133
PflFI GACNNNGTC 1 cut(s) 133
PflMI CCANNNNNTGG 1 cut(s) 853
PkrI GCNGC 3 cut(s) 589, 643, 646
PleI GAGTC 2 cut(s) 814, 1011
PpsI GAGTC 2 cut(s) 814, 1011
Psp124BI GAGCTC 1 cut(s) 658
Psp6I CCWGG 2 cut(s) 56, 1287
PspEI GGTNACC 1 cut(s) 1297
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 2 cut(s) 56, 1287
PspN4I GGNNCC 2 cut(s) 54, 1241
PspPI GGNCC 1 cut(s) 844
PspXI VCTCGAGB 1 cut(s) 803
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 64, 1050, 1239
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 7 cut(s) 375, 838, 899, 967, 1184, 1249, 1331
RsaNI GTAC 7 cut(s) 374, 837, 898, 966, 1183, 1248, 1330
SacI GAGCTC 1 cut(s) 658
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 12, 335, 537, 597, 1341
SatI GCNGC 3 cut(s) 588, 642, 645
Sau96I GGNCC 1 cut(s) 844
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 2 cut(s) 815, 1012
ScrFI CCNGG 2 cut(s) 58, 1289
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 3 cut(s) 201, 628, 721
SfcI CTRYAG 2 cut(s) 68, 642
Sfr274I CTCGAG 1 cut(s) 803
SinI GGWCC 1 cut(s) 844
SlaI CTCGAG 1 cut(s) 803
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SsiI CCGC 3 cut(s) 175, 587, 1295
SspI AATATT 1 cut(s) 1085
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 56, 1287
StyI CCWWGG 2 cut(s) 386, 970
TaaI ACNGT 2 cut(s) 897, 1175
TaiI ACGT 1 cut(s) 1331
TaqI TCGA 6 cut(s) 288, 426, 566, 672, 804, 945
TaqII GACCGA 1 cut(s) 342
TatI WGTACW 3 cut(s) 373, 897, 1247
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 5 cut(s) 32, 223, 777, 931, 1133
Tru1I TTAA 5 cut(s) 12, 335, 537, 597, 1341
Tru9I TTAA 5 cut(s) 12, 335, 537, 597, 1341
TscAI CASTG 5 cut(s) 166, 874, 1101, 1193, 1321
TseFI GTSAC 3 cut(s) 520, 659, 1297
TseI GCWGC 2 cut(s) 641, 644
Tsp45I GTSAC 3 cut(s) 520, 659, 1297
TspDTI ATGAA 6 cut(s) 57, 289, 359, 436, 893, 1125
TspGWI ACGGA 2 cut(s) 91, 1001
TspRI CASTG 5 cut(s) 166, 874, 1101, 1193, 1321
Tth111I GACNNNGTC 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 4 cut(s) 45, 124, 539, 885
XhoI CTCGAG 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.