RchiOBHm_Chr5g0017741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000731
Physical Location & Seq
Forward (+)
12346425 .. 12348150
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29799

Sequence Viewer

Length: 759 bp
ATGGCCTTGTCCTCTATGCGGAATCTGGCTCGGTCCGGCCTCCCTCTTCCGTTATTTAGGACCCAGTTCGAAAGAACCCGGCTTGAAAGGACCCAGTTCGTCAGGACCTTTTGGAAGAGTAGCAAAGGGCGAATGGAAAAAGACTTGGAAGAGAAGCTGAAACAGCTCATTGACCAGGGGATTAAAGTTGAGATCGTCGAAGATGGCAACCAGCCAAGAGGCACGTACACTATAGAAGTACATCCCCACACTTTGAAGGTGATGGAAGTTTGGGGCAAGCAGATGAAGATTTTAGGGATGCTGAGTGATCTATACATTCTTGCTGAAGTCAAGTTGACTTTGAATGAGTCCGGTTTGTTGGCATCCTTGTACCAGCACGGCCCAATTGCCACCTGGAGAGCAGTAGCTCAGAGAATGAAAGGGAAAGCTATTGATTCTGCTCATGAGCTAAAGATAACAGAGACATGGCTAGATAGGATTGGACCATTGGCCAAAGAAGTCTCTACTGTTCTCATCATTTGTCAGAAACAAAAGAAGACAGCCTCACAACCTGAAGAAGGTAGCCTAGAGGTCCTCCCCCATGACTTTGGATCCATTTTGATCAAACTTTCCCAACTTCGTTTGAAATGGAAGGTCATTGCTTCTTTGGAGAGTGTAACACTAATGGATGACTCTGAGATGGAAGACATGAATGAGATAGAATCGATAATCAGAGATGTACACAAGGTTGTGGTTATCCAACAACTGTTGCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.83

Weight (kDa)

8.84

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 2 cut(s) 585, 598
AcoI YGGCCR 1 cut(s) 489
AcuI CTGAAG 2 cut(s) 345, 573
AfaI GTAC 4 cut(s) 227, 240, 371, 720
AfiI CCNNNNNNNGG 2 cut(s) 18, 557
AgsI TTSAA 4 cut(s) 86, 256, 343, 625
AjnI CCWGG 2 cut(s) 174, 392
AluBI AGCT 5 cut(s) 157, 166, 407, 428, 448
AluI AGCT 5 cut(s) 157, 166, 407, 428, 448
Alw26I GTCTC 2 cut(s) 455, 505
AlwI GGATC 2 cut(s) 585, 598
AoxI GGCC 4 cut(s) 3, 37, 379, 489
AspS9I GGNCC 7 cut(s) 33, 60, 90, 105, 380, 482, 571
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 69
AvaII GGWCC 6 cut(s) 33, 60, 90, 105, 482, 571
BalI TGGCCA 1 cut(s) 491
BamHI GGATCC 1 cut(s) 590
BbsI GAAGAC 2 cut(s) 542, 690
BccI CCATC 3 cut(s) 197, 256, 673
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 2 cut(s) 176, 394
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 455, 505
BfaI CTAG 2 cut(s) 470, 566
BfmI CTRYAG 1 cut(s) 231
Bme1390I CCNGG 3 cut(s) 79, 176, 394
Bme18I GGWCC 6 cut(s) 33, 60, 90, 105, 482, 571
BmgT120I GGNCC 7 cut(s) 33, 60, 90, 105, 380, 482, 571
BmiI GGNNCC 3 cut(s) 62, 92, 592
BmrFI CCNGG 3 cut(s) 79, 176, 394
BmrI ACTGGG 2 cut(s) 58, 88
BmsI GCATC 2 cut(s) 288, 371
BmuI ACTGGG 2 cut(s) 58, 88
BpiI GAAGAC 2 cut(s) 542, 690
BpmI CTGGAG 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 557
Bse1I ACTGG 2 cut(s) 64, 94
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 176, 394
BseCI ATCGAT 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 4 cut(s) 241, 303, 362, 673
BseLI CCNNNNNNNGG 2 cut(s) 18, 557
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 293, 422, 666
BseNI ACTGG 2 cut(s) 64, 94
BshFI GGCC 4 cut(s) 5, 39, 381, 491
BshVI ATCGAT 1 cut(s) 704
BsiSI CCGG 3 cut(s) 36, 79, 351
BslI CCNNNNNNNGG 2 cut(s) 18, 557
BsmAI GTCTC 2 cut(s) 455, 505
BsnI GGCC 4 cut(s) 5, 39, 381, 491
Bsp119I TTCGAA 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 192, 307, 590, 600
BspACI CCGC 1 cut(s) 19
BspANI GGCC 4 cut(s) 5, 39, 381, 491
BspCNI CTCAG 3 cut(s) 294, 421, 667
BspDI ATCGAT 1 cut(s) 704
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 62, 92, 592
BspPI GGATC 2 cut(s) 585, 598
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 718
BsrI ACTGG 2 cut(s) 64, 94
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 4 cut(s) 192, 307, 590, 600
Bst2UI CCWGG 2 cut(s) 176, 394
Bst4CI ACNGT 2 cut(s) 508, 747
Bst6I CTCTTC 3 cut(s) 51, 110, 144
BstAUI TGTACA 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 302, 408, 675
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 4 cut(s) 241, 303, 362, 673
BstKTI GATC 4 cut(s) 195, 310, 593, 603
BstMAI GTCTC 2 cut(s) 455, 505
BstMBI GATC 4 cut(s) 192, 307, 590, 600
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 176, 394
BstSCI CCNGG 3 cut(s) 77, 174, 392
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 2 cut(s) 542, 690
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 587
BstYI RGATCY 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 704
BsuRI GGCC 4 cut(s) 5, 39, 381, 491
BsuTUI ATCGAT 1 cut(s) 704
BtsCI GGATG 4 cut(s) 241, 303, 362, 673
Cac8I GCNNGC 1 cut(s) 278
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 7 cut(s) 33, 60, 90, 105, 380, 482, 571
ClaI ATCGAT 1 cut(s) 704
CpoI CGGWCCG 1 cut(s) 33
Csp6I GTAC 4 cut(s) 226, 239, 370, 719
CspI CGGWCCG 1 cut(s) 33
CviAII CATG 4 cut(s) 443, 465, 581, 688
CviQI GTAC 4 cut(s) 226, 239, 370, 719
DdeI CTNAG 3 cut(s) 302, 408, 675
DpnI GATC 4 cut(s) 194, 309, 592, 602
DpnII GATC 4 cut(s) 192, 307, 590, 600
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 51, 110, 144
EarI CTCTTC 3 cut(s) 51, 110, 144
Eco47I GGWCC 6 cut(s) 33, 60, 90, 105, 482, 571
Eco57I CTGAAG 2 cut(s) 345, 573
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoO109I RGGNCCY 4 cut(s) 60, 90, 105, 571
EcoRII CCWGG 2 cut(s) 174, 392
FaeI CATG 4 cut(s) 446, 468, 584, 691
FaiI YATR 7 cut(s) 17, 233, 313, 444, 466, 582, 689
FatI CATG 4 cut(s) 442, 464, 580, 687
FbaI TGATCA 1 cut(s) 600
FokI GGATG 4 cut(s) 228, 310, 349, 680
FspBI CTAG 2 cut(s) 470, 566
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 4 cut(s) 5, 39, 381, 491
HapII CCGG 3 cut(s) 36, 79, 351
Hin1II CATG 4 cut(s) 446, 468, 584, 691
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 5 cut(s) 22, 347, 434, 671, 701
HpaII CCGG 3 cut(s) 36, 79, 351
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 228, 336, 721
Hpy188I TCNGA 4 cut(s) 411, 525, 676, 713
Hpy188III TCNNGA 2 cut(s) 103, 443
Hpy8I GTNNAC 3 cut(s) 228, 336, 721
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 250, 551, 625
HpyCH4III ACNGT 2 cut(s) 508, 747
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 302, 408, 675
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 4 cut(s) 446, 468, 584, 691
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 4 cut(s) 192, 307, 590, 600
LweI GCATC 2 cut(s) 288, 371
MaeI CTAG 2 cut(s) 470, 566
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 655
MalI GATC 4 cut(s) 194, 309, 592, 602
MboI GATC 4 cut(s) 192, 307, 590, 600
MboII GAAGA 8 cut(s) 38, 127, 161, 212, 298, 547, 566, 695
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 590
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 1 cut(s) 384
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 2 cut(s) 356, 665
MnlI CCTC 7 cut(s) 22, 50, 54, 212, 553, 562, 584
Mox20I TGGCCA 1 cut(s) 491
MscI TGGCCA 1 cut(s) 491
MseI TTAA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 491
MspI CCGG 3 cut(s) 36, 79, 351
MspR9I CCNGG 3 cut(s) 79, 176, 394
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 2 cut(s) 176, 394
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 79
NdeII GATC 4 cut(s) 192, 307, 590, 600
NlaIII CATG 4 cut(s) 446, 468, 584, 691
NlaIV GGNNCC 3 cut(s) 62, 92, 592
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 442
PfeI GAWTC 3 cut(s) 22, 434, 701
PleI GAGTC 2 cut(s) 355, 665
PpsI GAGTC 2 cut(s) 355, 665
Ppu21I YACGTR 1 cut(s) 225
PpuMI RGGWCCY 4 cut(s) 60, 90, 105, 571
Psp5II RGGWCCY 4 cut(s) 60, 90, 105, 571
Psp6I CCWGG 2 cut(s) 174, 392
PspGI CCWGG 2 cut(s) 174, 392
PspN4I GGNNCC 3 cut(s) 62, 92, 592
PspPI GGNCC 7 cut(s) 33, 60, 90, 105, 380, 482, 571
PspPPI RGGWCCY 4 cut(s) 60, 90, 105, 571
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 4 cut(s) 227, 240, 371, 720
RsaNI GTAC 4 cut(s) 226, 239, 370, 719
Rsr2I CGGWCCG 1 cut(s) 33
RsrII CGGWCCG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 4 cut(s) 192, 307, 590, 600
Sau96I GGNCC 7 cut(s) 33, 60, 90, 105, 380, 482, 571
SchI GAGTC 2 cut(s) 356, 665
ScrFI CCNGG 3 cut(s) 79, 176, 394
SfaNI GCATC 2 cut(s) 288, 371
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 69
SinI GGWCC 6 cut(s) 33, 60, 90, 105, 482, 571
Sse9I AATT 1 cut(s) 384
SsiI CCGC 1 cut(s) 19
SspMI CTAG 2 cut(s) 470, 566
StyD4I CCNGG 3 cut(s) 77, 174, 392
TaaI ACNGT 2 cut(s) 508, 747
TaiI ACGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 69, 198, 704
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 384
TatI WGTACW 2 cut(s) 238, 718
TfiI GAWTC 3 cut(s) 22, 434, 701
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 299, 431, 704
TspGWI ACGGA 1 cut(s) 39
VpaK11BI GGWCC 6 cut(s) 33, 60, 90, 105, 482, 571
XagI CCTNNNNNAGG 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XspI CTAG 2 cut(s) 470, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.