Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000731

Physical Location & Seq

Genomic Coordinates Forward (+)

12547355 .. 12549189

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTTGATCTGTGTAATCAATTTGGTTGGGTTGGTTGGTGGGTTGCTCACGCATCAGAGTTTGTGTGGGTGCTGCTCATTGCTAGGTCTAATTACGGGTTTGTTTTGGATTTGGAATTTAGGCGAATGGAAAAAGACTTGGAAGAGAAGCTGAAACAGCTCATTGACCAGGGGATTAAAGTTGAGATCGTCGAAGATAGCAACCAGCCAAGAGGCACGTACACTGTAGAAGTACATCCCCACACTTTGGAGGTGATGGAAGTTTGGGGCAAGCAAATGAAGATTTTAGGGATATTGAATGATCTATACATTCTTGCTGAAGTCAAGTTTACTTTGAACAAGTCCGGTTTGTTGGCATCCTTGTACCAGCACGGCCCAATTGCCACTTGGAGAGCAGTAGCTCACAGAATGAAAGGGAAAGCTACTGATTCTGCTCATGAGCTAAAGACAACAGAGACATGGCTGGATAGGATCGGACCATTGGCCAAAGAAGTTTCTACGGTTCTCATTGTTCATCAGAAACAAAAGAAGACAGCCTCACAACCTGAAGAAGGTAGCCTAGAGGTACTTCCCCATAACTTTGGATCCATTTTGATCAAGCTTTCCCAACTTCGTTTGAAATGGAAGGCCATTGCTTCTTTGGAGAGTGCAACACTGTTGGATGACTTTGAGATGGAAGACATGAATGAGATAGAATCAATAATCAGAGATGTACACAAGGTTGTGGTTGTCCAACAACTGTTGCAAAAAGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.93

Weight (kDa)

5.87

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04610 FvH4_1g04610 FvH4_3g11030 FvH4_3g11030 FvH4_3g11040 FvH4_6g11790 FvH4_6g11790
prunus_persica	Prupe.6G273200_v2.0.a1 Prupe.6G273300_v2.0.a1 Prupe.6G273400_v2.0.a1 Prupe.6G273700_v2.0.a1 Prupe.6G273800_v2.0.a1 Prupe.6G274100_v2.0.a1 Prupe.6G274200_v2.0.a1 Prupe.6G274200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479631 RchiOBHm_Chr3g0479741 RchiOBHm_Chr5g0017731 RchiOBHm_Chr5g0017741
rosa_laevigata	RLG00000003409 RLG00000023552 RLG00000023554 RLG00000023555 RLG00000023557 RLG00000024775 RLG00000032310
rosa_multiflora	Rmu_sc0001775.1_g000001 Rmu_sc0001775.1_g000014 Rmu_sc0002232.1_g000010 Rmu_sc0002669.1_g000040 Rmu_sc0003254.1_g000006 Rmu_sc0003755.1_g000001 Rmu_sc0009555.1_g000006 Rmu_sc0009555.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059750 Rroxscaffold_1G00059760 Rroxscaffold_3G00252610 Rroxscaffold_6G00402110
rosa_rugosa	Rorug03G0176700 Rorug03G0177000 Rorug05G0038000 Rorug05G0038100 Rorug05G0038200 Rorug05G0038400 Rorug06G0046200
rosa_samantha	Rh3AG228700 Rh3BG127800 Rh3BG260600 Rh3BG260900 Rh3CG257600 Rh3CG258000 Rh3DG254100 Rh5AG131300 Rh5AG131400 Rh5AG131500 Rh5AG131600 Rh5BG129100 Rh5BG129200 Rh5BG129500 Rh5CG141500 Rh5CG141600 Rh5CG141800 Rh5DG131100 Rh5DG131200 Rh5DG131300 Rh5DG131400
rosa_wichuraiana	Rw0G010540 Rw3G020330 Rw3G020370 Rw5G011390 Rw5G011400 Rw5G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AclWI	GGATC	3 cut(s)	479, 579, 592
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	2 cut(s)	339, 567
AfaI	GTAC	5 cut(s)	221, 234, 365, 567, 714
AfiI	CCNNNNNNNGG	2 cut(s)	247, 551
AgsI	TTSAA	3 cut(s)	298, 337, 619
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	6 cut(s)	151, 160, 401, 422, 442, 601
AluI	AGCT	6 cut(s)	151, 160, 401, 422, 442, 601
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	479, 579, 592
AoxI	GGCC	3 cut(s)	373, 483, 627
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	374, 476
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	536, 684
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	250, 667
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	84, 560
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	374, 476
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	62, 365
BpiI	GAAGAC	2 cut(s)	536, 684
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 551
Bse3DI	GCAATG	2 cut(s)	78, 630
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	3 cut(s)	235, 356, 667
BseLI	CCNNNNNNNGG	2 cut(s)	247, 551
BseMI	GCAATG	2 cut(s)	78, 630
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	3 cut(s)	375, 485, 629
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	247, 551
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	375, 485, 629
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
BspANI	GGCC	3 cut(s)	375, 485, 629
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	3 cut(s)	479, 579, 592
BsrDI	GCAATG	2 cut(s)	78, 630
BsrGI	TGTACA	1 cut(s)	712
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	4 cut(s)	226, 502, 657, 741
Bst6I	CTCTTC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	712
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	235, 356, 667
BstKTI	GATC	6 cut(s)	10, 189, 304, 474, 587, 597
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	536, 684
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	375, 485, 629
BtsCI	GGATG	3 cut(s)	235, 356, 667
BtsIMutI	CAGTG	2 cut(s)	222, 653
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	374, 476
Csp6I	GTAC	5 cut(s)	220, 233, 364, 566, 713
CviAII	CATG	3 cut(s)	437, 459, 682
CviQI	GTAC	5 cut(s)	220, 233, 364, 566, 713
DpnI	GATC	6 cut(s)	9, 188, 303, 473, 586, 596
DpnII	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	339, 567
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	440, 462, 685
FaiI	YATR	5 cut(s)	307, 438, 460, 576, 683
FatI	CATG	3 cut(s)	436, 458, 681
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	3 cut(s)	222, 343, 674
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	84, 560
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	375, 485, 629
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	3 cut(s)	440, 462, 685
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	428, 695
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	222, 330, 715
Hpy188I	TCNGA	4 cut(s)	58, 476, 519, 707
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	3 cut(s)	222, 330, 715
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	545, 619
HpyCH4III	ACNGT	4 cut(s)	226, 502, 657, 741
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	650, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	440, 462, 685
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
LpnPI	CCDG	7 cut(s)	155, 182, 218, 358, 380, 449, 558
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	62, 365
MaeI	CTAG	2 cut(s)	84, 560
MaeII	ACGT	1 cut(s)	218
MalI	GATC	6 cut(s)	9, 188, 303, 473, 586, 596
MboI	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
MboII	GAAGA	6 cut(s)	155, 206, 292, 541, 560, 689
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	584
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	4 cut(s)	20, 91, 116, 378
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	639, 757
MnlI	CCTC	4 cut(s)	206, 244, 547, 556
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
NlaIII	CATG	3 cut(s)	440, 462, 685
NlaIV	GGNNCC	1 cut(s)	586
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	428, 695
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	2 cut(s)	374, 476
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	5 cut(s)	221, 234, 365, 567, 714
RsaNI	GTAC	5 cut(s)	220, 233, 364, 566, 713
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	6 cut(s)	7, 186, 301, 471, 584, 594
Sau96I	GGNCC	2 cut(s)	374, 476
ScrFI	CCNGG	1 cut(s)	170
SfaNI	GCATC	2 cut(s)	62, 365
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	476
Sse9I	AATT	4 cut(s)	20, 91, 116, 378
SspMI	CTAG	2 cut(s)	84, 560
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	226, 502, 657, 741
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	20, 91, 116, 378
TatI	WGTACW	2 cut(s)	232, 712
TfiI	GAWTC	2 cut(s)	428, 695
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	229, 660
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	293, 425, 503, 698
TspRI	CASTG	2 cut(s)	229, 660
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	476
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	2 cut(s)	384, 637
XspI	CTAG	2 cut(s)	84, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.