Rroxscaffold_1G00059750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000731
Physical Location & Seq
Reverse (-)
81804642 .. 81805778
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059750.1

Sequence Viewer

Length: 600 bp
ATGTCCTTCTCCTCTACCCGGAATTATCTGGCCCGTTCCGGCCTCCATTTCCCATTTCAGAGGACACAGTTCCAAAGGACCCCGTTTGTTCGTTCTTTTTGGCAGAAGAACAAAGGACACATGCAAAGAGGTAGAACTGCAAGTCTAAAAGGGCAAATCGAAAACCTCAAGGTCCGTGGATTCTGTGTGGAGAGACGAAAGGATGGCAACCAGCCTAGAGGACATCGCACTATAGTCATGGATCCGCCTTTTTATAAAAAGCTGAAAATTATGGGGGATCAAGAACAGATTTTAAGTATACTGACGGAGCTTTATATCATATCCGAAGTGAAGTTAACTCTTGCCACAAAGGGTTTGTTTTCTTGCTTGTACGAACATGGAGTAGAAGACACATGGAGAGCATTTGTTGAGACTATGAAAGGGAGAGCTAATACTTCCTTCGATTCTTACTGGAAACAGGAACTCGAGAAAATGGAGAAATGGTTGGACAATGTAGAGCCTTTGGCAAAAGAAATATATCAGCTCTCAAAGCTTAGGTTGAAATGGAAAGCTATTGCATCCTTGGAGCATGGAAACTTGTTGGATGAATTAGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.45

Weight (kDa)

9.69

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccI GTMKAC 1 cut(s) 298
AciI CCGC 1 cut(s) 245
AclWI GGATC 3 cut(s) 236, 249, 285
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 541
AluBI AGCT 6 cut(s) 262, 310, 428, 523, 532, 551
AluI AGCT 6 cut(s) 262, 310, 428, 523, 532, 551
Alw26I GTCTC 2 cut(s) 187, 404
AlwI GGATC 3 cut(s) 236, 249, 285
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 30, 40
AspS9I GGNCC 3 cut(s) 31, 78, 172
AsuC2I CCSGG 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 2 cut(s) 78, 172
BamHI GGATCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 393
BccI CCATC 1 cut(s) 197
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 187, 404
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 78, 172
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 31, 78, 172
BmiI GGNNCC 2 cut(s) 80, 243
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 566
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 175, 561
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 175, 561
BseGI GGATG 3 cut(s) 208, 557, 589
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 455
BshFI GGCC 2 cut(s) 32, 42
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 19, 39
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 187, 404
BsmBI CGTCTC 1 cut(s) 187
BsnI GGCC 2 cut(s) 32, 42
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 2 cut(s) 241, 277
BspACI CCGC 1 cut(s) 245
BspANI GGCC 2 cut(s) 32, 42
BspLI GGNNCC 2 cut(s) 80, 243
BspPI GGATC 3 cut(s) 236, 249, 285
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 175, 561
BssMI GATC 2 cut(s) 241, 277
BssNAI GTATAC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 561
Bst1107I GTATAC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 533
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 208, 557, 589
BstKTI GATC 2 cut(s) 244, 280
BstMAI GTCTC 2 cut(s) 187, 404
BstMBI GATC 2 cut(s) 241, 277
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 32, 42
BtgI CCRYGG 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 3 cut(s) 208, 557, 589
Cfr13I GGNCC 3 cut(s) 31, 78, 172
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 5 cut(s) 121, 238, 377, 393, 569
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 1 cut(s) 533
DpnI GATC 2 cut(s) 243, 279
DpnII GATC 2 cut(s) 241, 277
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 78, 172
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 5 cut(s) 124, 241, 380, 396, 572
FatI CATG 5 cut(s) 120, 237, 376, 392, 568
FblI GTMKAC 1 cut(s) 298
FokI GGATG 3 cut(s) 215, 544, 596
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 32, 42
HapII CCGG 2 cut(s) 19, 39
Hin1II CATG 5 cut(s) 124, 241, 380, 396, 572
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 180, 443
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 2 cut(s) 19, 39
Hpy166II GTNNAC 2 cut(s) 299, 336
Hpy188I TCNGA 2 cut(s) 60, 325
Hpy188III TCNNGA 2 cut(s) 281, 466
Hpy8I GTNNAC 2 cut(s) 299, 336
HpyAV CCTTC 2 cut(s) 16, 448
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 124, 140, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 1 cut(s) 533
Hsp92II CATG 5 cut(s) 124, 241, 380, 396, 572
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 241, 277
LmnI GCTCC 2 cut(s) 307, 565
LpnPI CCDG 6 cut(s) 14, 32, 52, 224, 436, 443
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 216
MalI GATC 2 cut(s) 243, 279
MboI GATC 2 cut(s) 241, 277
MboII GAAGA 2 cut(s) 118, 398
MflI RGATCY 1 cut(s) 241
MluCI AATT 3 cut(s) 22, 267, 587
MmeI TCCRAC 2 cut(s) 465, 561
MnlI CCTC 6 cut(s) 22, 53, 54, 122, 176, 212
MseI TTAA 2 cut(s) 293, 335
MspI CCGG 2 cut(s) 19, 39
MspR9I CCNGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 529
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 241, 277
NlaIII CATG 5 cut(s) 124, 241, 380, 396, 572
NlaIV GGNNCC 2 cut(s) 80, 243
NspI RCATGY 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 464
PfeI GAWTC 2 cut(s) 180, 443
PpuMI RGGWCCY 1 cut(s) 78
PsiI TTATAA 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 80, 243
PspPI GGNCC 3 cut(s) 31, 78, 172
PspPPI RGGWCCY 1 cut(s) 78
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 293, 335
Sau3AI GATC 2 cut(s) 241, 277
Sau96I GGNCC 3 cut(s) 31, 78, 172
ScrFI CCNGG 1 cut(s) 19
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 2 cut(s) 78, 172
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 167, 464
SmoI CTYRAG 2 cut(s) 167, 464
Sse9I AATT 3 cut(s) 22, 267, 587
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 159, 441, 465
TasI AATT 3 cut(s) 22, 267, 587
TfiI GAWTC 2 cut(s) 180, 443
Tru1I TTAA 2 cut(s) 293, 335
Tru9I TTAA 2 cut(s) 293, 335
TspDTI ATGAA 2 cut(s) 431, 600
TspGWI ACGGA 2 cut(s) 164, 320
VpaK11BI GGWCC 2 cut(s) 78, 172
XceI RCATGY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.