Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000731

Physical Location & Seq

Genomic Coordinates Forward (+)

3085738 .. 3089153

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGTTGCCGAGTACTTTGCTTTTGTTCCTTCTCTTCCCATTTTGCAGATCCGTAGGCACCATAGGACCAAACCAGTATGTCAAGGATGGGGACACCATAGTATCTAAAGAAATAAAGTTTGAGTTAGGCTTCTTCAGCCCAGGAAACTCTAGTTACCGGTATGTTGGAATTTGGTATGCTAAAGTACCTCAAAAACCAGTGGTATGGGTGGCAAACAGAGAGAAGCCAATTACTGATTCTTCTGGTGTACTCAAAATAAACAGGAATGGAAGCCTGGTACTTTTTGCTGACAATAAGGAGAACTTGGTAATATGGTCAACAAAGATATCAGGCAAAACCAATAGTAGTAGTACTTCAGTTCAGCTTTTGGATACAGGAAACTTGGTTTTGGTCCAAGGTGAAAATAGTGAAGATGTATTATGGCAAAGCTTTGATTATCCTACAGATACTATGCTTCCAGGAATGAAACTTGGGTTAAATCGGGAGGTCCAGCTGAACAGCTTCTTAACATCCTGGAAGTCACAAGATGACCCAGGAACTGGGGACTTTTCATATAGGCTAAACACTACTGGCTCTCCAGAATTCTTTTTGTACAATGGTTCAACTCGGTATTGGCGAAGTGGTTCATGGCCATGGAGAAATATATCAGTCTCCACAAGTCACTCAAATCCTTTCATTTTTGTCAATAATCAAGTTGAGACATACATAATCGATTCTGCTCATAACACCTCTGAACTTTCAAGATATGTGGTGAACTATCATGGGACACTTCAGCGCCTAACGTGGAATGATATTGAGAGTCAATGGAAGGAAATATGGGCTGCACCAAAGTACCCATGTGACCAATATGGAGAGTGTGGTGCCTTCAGTACATGTAGTCCTGACAATATTCAAGGTCTTAAGTGTACATGTTTGCCGGGCTATGAACCAAGGTCTTTTGAGGATTGGTATCAGGGAGATGGATCAGATGGTTGTGTGAGTAAGCAGCCACAAGTGTCGAAGTGTGAAAATGGAGGTTTCAAGGTGGTGCAAAATGTGAAGCTTCCAGATGCATCAATATCAGCTTGGTTGGACACAAAAATGAGTGCCGCAGCGTGCAAACGTGCATGCTTGAGGAATTGTTCATGCCTTGCGTATTCAAGCCTAGAAATTGAAGGAGGAGGTGGTTGCTTGGCCTGGTATGGTGAATTGATGGACATTTTATTGTTTGCAGAGGAGGGAAGCGACTTCTATGTTCGAGTGGATTCATCTGAATTAGCTGCCGGAAAATCAAGAGGTTTCCTCAGAAGAAAGGGAACACTTGCTATCCTAATTCTGCCAATATTAGTGGCACTGTATCTCATCATGTTTGCTTATCGGTGGCTTATGAAAAAGAGGAAGAGAACAGGTATGAGAGTTTCATCTCCCATGAGAAGAACATGGTGGAGACAATACTCTCACTTTAGTCATTACACCGAGTCTGTGGAGGAGAATAAGCTAGAGGACACAATAAACCATCCCGATTTGCAACTTTTCCATCTGAGCACGATAATAGCTGCAACAGAAGACTTCTCTCTGGCTAACAAACTAGGAGAGGGTGGATTTGGCTCTGTTTTTAAGGGTCAGTTATCCAATCAACATATGATTGCTGTGAAAAGATTGTCCATGAGTTCAAGACAAGGCATTGAAGAATTCAAAACTGAAGTTATGCTCATCGCAAAACTTCAACACAGGAATCTGGTGAAACTATTAGGATGCTGTATAGAGAAAGAAGAAAAGATGTTAATCTACGAGTATTTGCCAAACAACAGCTTGGACTCTTTTCTTTTCGATCAAACTAGAAGATCCATCTTGGATTGGAGAAAGCGGTTTGACATAGTCATTGGAGTTGCTCGTGGAATATTGTATCTTCATCAAGATTCAAGGTTGAGAATTATCCATAGGGATCTAAAAACCAGCAATGTTCTTCTAGATGCTGAAATGAAGCCAAAAGTTTCAGATTTTGGCATGGCCAGAATATTCAAAGGGGATCAACTACAACATGAGACGAACAGAGTTGTTGGAACCTATGGTTATATGTCACCGGAGTATGCAGTGTATGGGAAATTTTCAACAAAGTCAGATGTATTTAGTTTTGGGGTCATATTGTTGGAGATTGTAAGTGGCAAGAAAAACAATGCTTCTTATCAGGAGGATCATTCTCGCAATTTGATAGGTCATGTTTGGGATCTATGGACAGAACAGAGAGCCTTAGACATTGTGGATTCATCACTAAAGTCATATCATATTGATGAAGTCCTGAGATGCATTCAAATTGCGCTCTTATGCCTGCAAAAAGATGCAGCGGATAGGCCAACTATGTCAGAAGTTGTTCTAATGTTGAGTGGTGAAAGAGCTCTTGCATCCCCTCAACGGCCAGCATTCATCTTCACATGCAATAATGCTGATCCATTGATAGAAGAAGGATCATATTCTACTAATTATCTGACAATGACTGAAACCGTAGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

830

Amino Acids

94.05

Weight (kDa)

7.19

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	67 - 173	1.7e-37	D-mannose binding lectin
S_locus_glycop	PF00954	205 - 311	8.4e-19	S-locus glycoprotein domain
PAN_2	PF08276	335 - 400	2.2e-17	PAN-like domain
PK_Tyr_Ser-Thr	PF07714	519 - 785	1e-50	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	519 - 784	6.1e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04610 FvH4_1g04610 FvH4_3g11030 FvH4_3g11030 FvH4_3g11040 FvH4_6g11790 FvH4_6g11790
prunus_persica	Prupe.6G273200_v2.0.a1 Prupe.6G273300_v2.0.a1 Prupe.6G273400_v2.0.a1 Prupe.6G273700_v2.0.a1 Prupe.6G273800_v2.0.a1 Prupe.6G274100_v2.0.a1 Prupe.6G274200_v2.0.a1 Prupe.6G274200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479631 RchiOBHm_Chr3g0479741 RchiOBHm_Chr5g0017731 RchiOBHm_Chr5g0017741
rosa_laevigata	RLG00000003409 RLG00000023552 RLG00000023554 RLG00000023555 RLG00000023557 RLG00000024775 RLG00000032310
rosa_multiflora	Rmu_sc0001775.1_g000001 Rmu_sc0001775.1_g000014 Rmu_sc0002232.1_g000010 Rmu_sc0002669.1_g000040 Rmu_sc0003254.1_g000006 Rmu_sc0003755.1_g000001 Rmu_sc0009555.1_g000006 Rmu_sc0009555.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059750 Rroxscaffold_1G00059760 Rroxscaffold_3G00252610 Rroxscaffold_6G00402110
rosa_rugosa	Rorug03G0176700 Rorug03G0177000 Rorug05G0038000 Rorug05G0038100 Rorug05G0038200 Rorug05G0038400 Rorug06G0046200
rosa_samantha	Rh3AG228700 Rh3BG127800 Rh3BG260600 Rh3BG260900 Rh3CG257600 Rh3CG258000 Rh3DG254100 Rh5AG131300 Rh5AG131400 Rh5AG131500 Rh5AG131600 Rh5BG129100 Rh5BG129200 Rh5BG129500 Rh5CG141500 Rh5CG141600 Rh5CG141800 Rh5DG131100 Rh5DG131200 Rh5DG131300 Rh5DG131400
rosa_wichuraiana	Rw0G010540 Rw3G020330 Rw3G020370 Rw5G011390 Rw5G011400 Rw5G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 860
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	3 cut(s)	1089, 1846, 2324
AclWI	GGATC	9 cut(s)	42, 970, 1818, 1932, 2016, 2181, 2214, 2420, 2452
AcoI	YGGCCR	3 cut(s)	629, 1989, 2393
AcsI	RAATTY	4 cut(s)	168, 581, 1670, 2084
AcuI	CTGAAG	5 cut(s)	118, 339, 755, 850, 1701
AfaI	GTAC	9 cut(s)	13, 186, 249, 279, 352, 593, 833, 871, 907
AfiI	CCNNNNNNNGG	2 cut(s)	539, 2391
AflII	CTTAAG	1 cut(s)	899
AflIII	ACRYGT	2 cut(s)	872, 908
AgeI	ACCGGT	1 cut(s)	156
AjnI	CCWGG	6 cut(s)	139, 273, 457, 512, 532, 1175
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
Alw21I	GWGCWC	2 cut(s)	1526, 2377
Alw26I	GTCTC	4 cut(s)	655, 692, 1420, 2018
AlwI	GGATC	9 cut(s)	42, 970, 1818, 1932, 2016, 2181, 2214, 2420, 2452
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	5 cut(s)	629, 1173, 1989, 2330, 2393
ApeKI	GCWGC	6 cut(s)	821, 985, 1091, 1259, 1535, 2321
ApoI	RAATTY	4 cut(s)	168, 581, 1670, 2084
AsiGI	ACCGGT	1 cut(s)	156
Asp700I	GAANNNNTTC	3 cut(s)	500, 622, 2349
AspLEI	GCGC	2 cut(s)	777, 2299
AspS9I	GGNCC	3 cut(s)	65, 391, 487
AsuC2I	CCSGG	1 cut(s)	918
AsuHPI	GGTGA	6 cut(s)	410, 763, 1196, 1732, 2052, 2378
AvaII	GGWCC	3 cut(s)	65, 391, 487
BaeI	ACNNNNGTAYC	4 cut(s)	84, 117, 815, 848
BalI	TGGCCA	2 cut(s)	631, 1991
BanI	GGYRCC	2 cut(s)	56, 860
BanII	GRGCYC	1 cut(s)	2377
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BauI	CACGAG	1 cut(s)	1872
BbsI	GAAGAC	1 cut(s)	1551
Bbv12I	GWGCWC	2 cut(s)	1526, 2377
BbvI	GCAGC	6 cut(s)	808, 997, 1103, 1246, 1522, 2333
BccI	CCATC	7 cut(s)	80, 953, 962, 1186, 1503, 1524, 1835
BceAI	ACGGC	1 cut(s)	2408
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	6 cut(s)	141, 275, 459, 514, 534, 1177
BciVI	GTATCC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	4 cut(s)	655, 692, 1420, 2018
BfaI	CTAG	6 cut(s)	150, 1145, 1478, 1568, 1818, 1949
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	778
BfrI	CTTAAG	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	7 cut(s)	822, 986, 1089, 1092, 1260, 1536, 2322
BlsI	GCNGC	7 cut(s)	823, 987, 1090, 1093, 1261, 1537, 2323
BmcAI	AGTACT	2 cut(s)	13, 352
Bme1390I	CCNGG	7 cut(s)	141, 275, 459, 514, 534, 918, 1177
Bme18I	GGWCC	3 cut(s)	65, 391, 487
BmgT120I	GGNCC	3 cut(s)	65, 391, 487
BmiI	GGNNCC	3 cut(s)	58, 862, 2044
BmrFI	CCNGG	7 cut(s)	141, 275, 459, 514, 534, 918, 1177
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	7 cut(s)	1039, 1061, 1724, 1942, 2273, 2308, 2390
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	1551
BplI	GAGNNNNNCTC	2 cut(s)	1266, 1298
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	1132
BpuMI	CCSGG	1 cut(s)	918
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	2 cut(s)	948, 1763
BsaJI	CCNNGG	5 cut(s)	139, 394, 532, 632, 929
BsaWI	WCCGGW	2 cut(s)	156, 2062
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 2391
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	4 cut(s)	73, 197, 544, 574
Bse3DI	GCAATG	1 cut(s)	1945
Bse8I	GATNNNNATC	2 cut(s)	948, 1763
BseBI	CCWGG	6 cut(s)	141, 275, 459, 514, 534, 1177
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	5 cut(s)	139, 394, 532, 632, 929
BseGI	GGATG	5 cut(s)	91, 509, 1495, 1739, 2381
BseJI	GATNNNNATC	2 cut(s)	948, 1763
BseLI	CCNNNNNNNGG	2 cut(s)	539, 2391
BseMI	GCAATG	1 cut(s)	1945
BseMII	CTCAG	3 cut(s)	1297, 1511, 2270
BseNI	ACTGG	4 cut(s)	73, 197, 544, 574
BseRI	GAGGAG	3 cut(s)	1173, 1229, 1481
BseXI	GCAGC	6 cut(s)	808, 997, 1103, 1246, 1522, 2333
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	5 cut(s)	631, 1175, 1991, 2332, 2395
BshNI	GGYRCC	2 cut(s)	56, 860
BshTI	ACCGGT	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	2 cut(s)	1526, 2377
BsiSI	CCGG	4 cut(s)	157, 917, 1263, 2063
BslFI	GGGAC	3 cut(s)	104, 557, 778
BslI	CCNNNNNNNGG	2 cut(s)	539, 2391
BsmAI	GTCTC	4 cut(s)	655, 692, 1420, 2018
BsmBI	CGTCTC	1 cut(s)	2018
BsmFI	GGGAC	3 cut(s)	104, 557, 778
BsmI	GAATGC	2 cut(s)	2286, 2399
BsnI	GGCC	5 cut(s)	631, 1175, 1991, 2332, 2395
Bsp1286I	GDGCHC	2 cut(s)	1526, 2377
Bsp1407I	TGTACA	2 cut(s)	591, 905
Bsp19I	CCATGG	1 cut(s)	632
BspACI	CCGC	3 cut(s)	1089, 1846, 2324
BspANI	GGCC	5 cut(s)	631, 1175, 1991, 2332, 2395
BspCNI	CTCAG	3 cut(s)	1296, 1512, 2271
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	58, 862, 2044
BspPI	GGATC	9 cut(s)	42, 970, 1818, 1932, 2016, 2181, 2214, 2420, 2452
BspT107I	GGYRCC	2 cut(s)	56, 860
BspTI	CTTAAG	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	1945
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	2 cut(s)	591, 905
BsrI	ACTGG	4 cut(s)	73, 197, 544, 574
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	5 cut(s)	139, 394, 532, 632, 929
BssSI	CACGAG	1 cut(s)	1872
BssT1I	CCWWGG	3 cut(s)	394, 632, 929
Bst2BI	CACGAG	1 cut(s)	1872
Bst2UI	CCWGG	6 cut(s)	141, 275, 459, 514, 534, 1177
Bst4CI	ACNGT	2 cut(s)	1335, 2482
Bst6I	CTCTTC	2 cut(s)	38, 1373
BstAFI	CTTAAG	1 cut(s)	899
BstAUI	TGTACA	2 cut(s)	591, 905
BstC8I	GCNNGC	4 cut(s)	1096, 1108, 2309, 2397
BstDEI	CTNAG	4 cut(s)	1283, 1520, 2230, 2279
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	5 cut(s)	91, 509, 1495, 1739, 2381
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	777, 2299
BstMAI	GTCTC	4 cut(s)	655, 692, 1420, 2018
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	6 cut(s)	141, 275, 459, 514, 534, 1177
BstNSI	RCATGY	4 cut(s)	876, 912, 1110, 2415
BstSCI	CCNGG	7 cut(s)	139, 273, 457, 512, 532, 916, 1175
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	6 cut(s)	808, 997, 1103, 1246, 1522, 2333
BstV2I	GAAGAC	1 cut(s)	1551
BstX2I	RGATCY	4 cut(s)	47, 1823, 1924, 2206
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	4 cut(s)	47, 1823, 1924, 2206
Bsu15I	ATCGAT	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	5 cut(s)	631, 1175, 1991, 2332, 2395
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	1678
BtsCI	GGATG	5 cut(s)	91, 509, 1495, 1739, 2381
BtsI	GCAGTG	1 cut(s)	2079
BtsIMutI	CAGTG	3 cut(s)	204, 1331, 2079
Cac8I	GCNNGC	4 cut(s)	1096, 1108, 2309, 2397
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	777, 2299
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	65, 391, 487
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	9 cut(s)	12, 185, 248, 278, 351, 592, 832, 870, 906
CspAI	ACCGGT	1 cut(s)	156
CspCI	CAANNNNNGTGG	4 cut(s)	729, 764, 1308, 1343
CviQI	GTAC	9 cut(s)	12, 185, 248, 278, 351, 592, 832, 870, 906
DdeI	CTNAG	4 cut(s)	1283, 1520, 2230, 2279
EaeI	YGGCCR	3 cut(s)	629, 1989, 2393
Eam1104I	CTCTTC	2 cut(s)	38, 1373
EarI	CTCTTC	2 cut(s)	38, 1373
Ecl136II	GAGCTC	1 cut(s)	2375
Eco130I	CCWWGG	3 cut(s)	394, 632, 929
Eco24I	GRGCYC	1 cut(s)	2377
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	65, 391, 487
Eco53kI	GAGCTC	1 cut(s)	2375
Eco57I	CTGAAG	5 cut(s)	118, 339, 755, 850, 1701
EcoICRI	GAGCTC	1 cut(s)	2375
EcoRI	GAATTC	2 cut(s)	581, 1670
EcoRII	CCWGG	6 cut(s)	139, 273, 457, 512, 532, 1175
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	3 cut(s)	394, 632, 929
EcoT22I	ATGCAT	2 cut(s)	1054, 2288
EcoT38I	GRGCYC	1 cut(s)	2377
ErhI	CCWWGG	3 cut(s)	394, 632, 929
Esp3I	CGTCTC	1 cut(s)	2018
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	3 cut(s)	104, 557, 778
FauNDI	CATATG	1 cut(s)	1620
Fnu4HI	GCNGC	7 cut(s)	822, 986, 1089, 1092, 1260, 1536, 2322
FokI	GGATG	5 cut(s)	98, 496, 1482, 1746, 2368
FriOI	GRGCYC	1 cut(s)	2377
Fsp4HI	GCNGC	7 cut(s)	822, 986, 1089, 1092, 1260, 1536, 2322
FspBI	CTAG	6 cut(s)	150, 1145, 1478, 1568, 1818, 1949
GlaI	GCGC	2 cut(s)	776, 2298
GluI	GCNGC	7 cut(s)	822, 986, 1089, 1092, 1260, 1536, 2322
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	5 cut(s)	631, 1175, 1991, 2332, 2395
HapII	CCGG	4 cut(s)	157, 917, 1263, 2063
HhaI	GCGC	2 cut(s)	777, 2299
Hin6I	GCGC	2 cut(s)	775, 2297
HinP1I	GCGC	2 cut(s)	775, 2297
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	2 cut(s)	427, 1040
HinfI	GANTC	9 cut(s)	236, 713, 799, 1244, 1457, 1714, 1796, 1898, 2243
HpaII	CCGG	4 cut(s)	157, 917, 1263, 2063
HphI	GGTGA	6 cut(s)	410, 763, 1196, 1732, 2052, 2378
Hpy166II	GTNNAC	4 cut(s)	248, 318, 754, 906
Hpy188I	TCNGA	9 cut(s)	733, 967, 1252, 1286, 1521, 1978, 2101, 2344, 2466
Hpy8I	GTNNAC	4 cut(s)	248, 318, 754, 906
HpyAV	CCTTC	5 cut(s)	38, 802, 874, 1148, 2435
HpyCH4III	ACNGT	2 cut(s)	1335, 2482
HpyCH4IV	ACGT	2 cut(s)	782, 1102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	4 cut(s)	1283, 1520, 2230, 2279
HpySE526I	ACGT	2 cut(s)	782, 1102
HspAI	GCGC	2 cut(s)	775, 2297
Lsp1109I	GCAGC	6 cut(s)	808, 997, 1103, 1246, 1522, 2333
LweI	GCATC	7 cut(s)	1039, 1061, 1724, 1942, 2273, 2308, 2390
MaeI	CTAG	6 cut(s)	150, 1145, 1478, 1568, 1818, 1949
MaeII	ACGT	2 cut(s)	782, 1102
MaeIII	GTNAC	5 cut(s)	152, 519, 659, 839, 2058
MflI	RGATCY	4 cut(s)	47, 1823, 1924, 2206
MhlI	GDGCHC	2 cut(s)	1526, 2377
MlsI	TGGCCA	2 cut(s)	631, 1991
MluNI	TGGCCA	2 cut(s)	631, 1991
MlyI	GAGTC	3 cut(s)	808, 1466, 1790
MmeI	TCCRAC	4 cut(s)	145, 1050, 2020, 2109
Mox20I	TGGCCA	2 cut(s)	631, 1991
Mph1103I	ATGCAT	2 cut(s)	1054, 2288
MroXI	GAANNNNTTC	3 cut(s)	500, 622, 2349
MscI	TGGCCA	2 cut(s)	631, 1991
MseI	TTAA	5 cut(s)	476, 506, 900, 1596, 1763
MslI	CAYNNNNRTG	3 cut(s)	631, 1079, 2268
Msp20I	TGGCCA	2 cut(s)	631, 1991
MspA1I	CMGCKG	2 cut(s)	493, 2324
MspCI	CTTAAG	1 cut(s)	899
MspI	CCGG	4 cut(s)	157, 917, 1263, 2063
MspR9I	CCNGG	7 cut(s)	141, 275, 459, 514, 534, 918, 1177
Mva1269I	GAATGC	2 cut(s)	2286, 2399
MvaI	CCWGG	6 cut(s)	141, 275, 459, 514, 534, 1177
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	918
NcoI	CCATGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	1620
NlaIV	GGNNCC	3 cut(s)	58, 862, 2044
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	4 cut(s)	519, 659, 839, 2058
NsiI	ATGCAT	2 cut(s)	1054, 2288
NspI	RCATGY	4 cut(s)	876, 912, 1110, 2415
PaeI	GCATGC	1 cut(s)	1110
PciI	ACATGT	2 cut(s)	872, 908
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	2 cut(s)	2286, 2399
PdmI	GAANNNNTTC	3 cut(s)	500, 622, 2349
PfeI	GAWTC	6 cut(s)	236, 713, 1244, 1714, 1898, 2243
PflFI	GACNNNGTC	1 cut(s)	1856
PflMI	CCANNNNNTGG	1 cut(s)	539
PfoI	TCCNGGA	2 cut(s)	457, 512
PinAI	ACCGGT	1 cut(s)	156
PkrI	GCNGC	7 cut(s)	823, 987, 1090, 1093, 1261, 1537, 2323
PleI	GAGTC	3 cut(s)	807, 1465, 1790
PpsI	GAGTC	3 cut(s)	807, 1465, 1790
PscI	ACATGT	2 cut(s)	872, 908
Psp124BI	GAGCTC	1 cut(s)	2377
Psp6I	CCWGG	6 cut(s)	139, 273, 457, 512, 532, 1175
PspGI	CCWGG	6 cut(s)	139, 273, 457, 512, 532, 1175
PspN4I	GGNNCC	3 cut(s)	58, 862, 2044
PspPI	GGNCC	3 cut(s)	65, 391, 487
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	4 cut(s)	47, 1823, 1924, 2206
PsyI	GACNNNGTC	1 cut(s)	1856
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	9 cut(s)	13, 186, 249, 279, 352, 593, 833, 871, 907
RsaNI	GTAC	9 cut(s)	12, 185, 248, 278, 351, 592, 832, 870, 906
RseI	CAYNNNNRTG	3 cut(s)	631, 1079, 2268
SacI	GAGCTC	1 cut(s)	2377
SaqAI	TTAA	5 cut(s)	476, 506, 900, 1596, 1763
SatI	GCNGC	7 cut(s)	822, 986, 1089, 1092, 1260, 1536, 2322
Sau96I	GGNCC	3 cut(s)	65, 391, 487
ScaI	AGTACT	2 cut(s)	13, 352
SchI	GAGTC	3 cut(s)	808, 1466, 1790
ScrFI	CCNGG	7 cut(s)	141, 275, 459, 514, 534, 918, 1177
SduI	GDGCHC	2 cut(s)	1526, 2377
SfaNI	GCATC	7 cut(s)	1039, 1061, 1724, 1942, 2273, 2308, 2390
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	65, 391, 487
SmiMI	CAYNNNNRTG	3 cut(s)	631, 1079, 2268
SmlI	CTYRAG	2 cut(s)	899, 1111
SmoI	CTYRAG	2 cut(s)	899, 1111
SphI	GCATGC	1 cut(s)	1110
SsiI	CCGC	3 cut(s)	1089, 1846, 2324
SspI	AATATT	4 cut(s)	889, 1323, 1881, 1998
SspMI	CTAG	6 cut(s)	150, 1145, 1478, 1568, 1818, 1949
SstI	GAGCTC	1 cut(s)	2377
StyD4I	CCNGG	7 cut(s)	139, 273, 457, 512, 532, 916, 1175
StyI	CCWWGG	3 cut(s)	394, 632, 929
TaaI	ACNGT	2 cut(s)	1335, 2482
TaiI	ACGT	2 cut(s)	785, 1105
TaqI	TCGA	5 cut(s)	711, 998, 1237, 1809, 2488
TatI	WGTACW	6 cut(s)	11, 247, 350, 591, 869, 905
TauI	GCSGC	1 cut(s)	1091
TfiI	GAWTC	6 cut(s)	236, 713, 1244, 1714, 1898, 2243
Tru1I	TTAA	5 cut(s)	476, 506, 900, 1596, 1763
Tru9I	TTAA	5 cut(s)	476, 506, 900, 1596, 1763
TscAI	CASTG	3 cut(s)	204, 1338, 2079
TseFI	GTSAC	4 cut(s)	519, 659, 839, 2058
TseI	GCWGC	6 cut(s)	821, 985, 1091, 1259, 1535, 2321
Tsp45I	GTSAC	4 cut(s)	519, 659, 839, 2058
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	204, 1338, 2079
Tth111I	GACNNNGTC	1 cut(s)	1856
Van91I	CCANNNNNTGG	1 cut(s)	539
Vha464I	CTTAAG	1 cut(s)	899
VpaK11BI	GGWCC	3 cut(s)	65, 391, 487
XapI	RAATTY	4 cut(s)	168, 581, 1670, 2084
XbaI	TCTAGA	1 cut(s)	1948
XceI	RCATGY	4 cut(s)	876, 912, 1110, 2415
XmnI	GAANNNNTTC	3 cut(s)	500, 622, 2349
XspI	CTAG	6 cut(s)	150, 1145, 1478, 1568, 1818, 1949
ZrmI	AGTACT	2 cut(s)	13, 352
Zsp2I	ATGCAT	2 cut(s)	1054, 2288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.