Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000731

Physical Location & Seq

Genomic Coordinates Forward (+)

25842920 .. 25844200

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATCGACTCAGACGAGGAAATTCAGAAGGAAGTTAGAGGCAGAGCTAAGTGGATAGCGGAGATTGAAGAAAGACTAGGAGGAGTAAATGAAGCAGAGGACTCATGCATCTATAAAGTTCCAAGTAAGCTTCGAAGAGTAAAGCAGGACGCCTACAACCCTCGTGTTGTCTCAATTGGGCCTTTCCATCGAGGAGACCCCGACCTTGTAGCCCGCTTTCTTCAGCAAACAGACGATCCTTATGAGTCTCGCAGTTGCTTGAAAACTGCACGGAAGCTATTTATATTTAGACATGAAACTTTTTCATTCCTTCCGGAACTTGCTGATCCAGATAGCAAAAACAAGTGGGGATTCAACTGTTCTGCAACCCAACTTTTGGAGTCTGGAATTCGGTTTAAAGTCGGGTCGTCGGAGGACCAGTTGTTGAACATAACTTTCAGTAACGGAGTTATCAGGTTTCCCCCATTGGTTATGGACGATTCTGCGAGTTCAATCCTCAGAAACCTAATTGCCTTCGAGCAGTGCAGTCTTAGTAATATGCATGGCGTCACCTCATATGCATTCCTTATCAAGAGTCTTATCCGTTCCTCAGCGGATATCAAACGGCTTCGTCAATATGGGATCATACAGCACAATTGGATTGGAGATCAAGAAAATTTGAGTCAATTTGAAGGTATTGTAGATGGAGTTGTTATGAAGGACTTCTATATTGATAGATTGTGCGCCGAAGTCAATGCATACACCAGTAGATACTGGTTTCGAAGATATATCAAGTACCTTTATCGCACTTATTTCTCTTCTGCATGGAGTAAGATAGTATTTCTTGCCTCGATTTTGGCCTTCATTCTCACTTCTTTGCAGACATACTTCACCATTTACCCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

296

Amino Acids

34.17

Weight (kDa)

8.49

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04610 FvH4_1g04610 FvH4_3g11030 FvH4_3g11030 FvH4_3g11040 FvH4_6g11790 FvH4_6g11790
prunus_persica	Prupe.6G273200_v2.0.a1 Prupe.6G273300_v2.0.a1 Prupe.6G273400_v2.0.a1 Prupe.6G273700_v2.0.a1 Prupe.6G273800_v2.0.a1 Prupe.6G274100_v2.0.a1 Prupe.6G274200_v2.0.a1 Prupe.6G274200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479631 RchiOBHm_Chr3g0479741 RchiOBHm_Chr5g0017731 RchiOBHm_Chr5g0017741
rosa_laevigata	RLG00000003409 RLG00000023552 RLG00000023554 RLG00000023555 RLG00000023557 RLG00000024775 RLG00000032310
rosa_multiflora	Rmu_sc0001775.1_g000001 Rmu_sc0001775.1_g000014 Rmu_sc0002232.1_g000010 Rmu_sc0002669.1_g000040 Rmu_sc0003254.1_g000006 Rmu_sc0003755.1_g000001 Rmu_sc0009555.1_g000006 Rmu_sc0009555.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059750 Rroxscaffold_1G00059760 Rroxscaffold_3G00252610 Rroxscaffold_6G00402110
rosa_rugosa	Rorug03G0176700 Rorug03G0177000 Rorug05G0038000 Rorug05G0038100 Rorug05G0038200 Rorug05G0038400 Rorug06G0046200
rosa_samantha	Rh3AG228700 Rh3BG127800 Rh3BG260600 Rh3BG260900 Rh3CG257600 Rh3CG258000 Rh3DG254100 Rh5AG131300 Rh5AG131400 Rh5AG131500 Rh5AG131600 Rh5BG129100 Rh5BG129200 Rh5BG129500 Rh5CG141500 Rh5CG141600 Rh5CG141800 Rh5DG131100 Rh5DG131200 Rh5DG131300 Rh5DG131400
rosa_wichuraiana	Rw0G010540 Rw3G020330 Rw3G020370 Rw5G011390 Rw5G011400 Rw5G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	3 cut(s)	59, 214, 593
AclWI	GGATC	3 cut(s)	230, 320, 629
AcsI	RAATTY	3 cut(s)	21, 387, 655
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	150, 546
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	6 cut(s)	68, 262, 355, 427, 492, 671
AluBI	AGCT	3 cut(s)	47, 130, 277
AluI	AGCT	3 cut(s)	47, 130, 277
Alw26I	GTCTC	3 cut(s)	175, 189, 252
AlwI	GGATC	3 cut(s)	230, 320, 629
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	179, 837
ApoI	RAATTY	3 cut(s)	21, 387, 655
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	179, 415
AsuHPI	GGTGA	2 cut(s)	541, 862
AsuII	TTCGAA	2 cut(s)	133, 760
AvaII	GGWCC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	589
BccI	CCATC	2 cut(s)	195, 677
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BcoDI	GTCTC	3 cut(s)	175, 189, 252
BfaI	CTAG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	179, 415
BmsI	GCATC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	589
Bpu14I	TTCGAA	2 cut(s)	133, 760
BsaHI	GRCGYC	2 cut(s)	150, 546
BsaI	GGTCTC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	3 cut(s)	418, 744, 758
BseAI	TCCGGA	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	24, 511, 603
BseNI	ACTGG	3 cut(s)	418, 744, 758
BseRI	GAGGAG	2 cut(s)	96, 207
BsgI	GTGCAG	2 cut(s)	252, 544
BshFI	GGCC	2 cut(s)	181, 839
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	3 cut(s)	175, 189, 252
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	181, 839
Bso31I	GGTCTC	1 cut(s)	189
Bsp119I	TTCGAA	2 cut(s)	133, 760
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	5 cut(s)	3, 235, 325, 621, 646
BspACI	CCGC	3 cut(s)	59, 214, 593
BspANI	GGCC	2 cut(s)	181, 839
BspCNI	CTCAG	3 cut(s)	23, 510, 602
BspEI	TCCGGA	1 cut(s)	313
BspPI	GGATC	3 cut(s)	230, 320, 629
BspT104I	TTCGAA	2 cut(s)	133, 760
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	418, 744, 758
BssMI	GATC	5 cut(s)	3, 235, 325, 621, 646
BssNI	GRCGYC	2 cut(s)	150, 546
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	130, 802
BstACI	GRCGYC	2 cut(s)	150, 546
BstBI	TTCGAA	2 cut(s)	133, 760
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	5 cut(s)	10, 48, 497, 530, 589
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	5 cut(s)	6, 238, 328, 624, 649
BstMAI	GTCTC	3 cut(s)	175, 189, 252
BstMBI	GATC	5 cut(s)	3, 235, 325, 621, 646
BsuRI	GGCC	2 cut(s)	181, 839
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	179, 415
CseI	GACGC	2 cut(s)	158, 535
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	4 cut(s)	105, 293, 542, 804
CviJI	RGCY	7 cut(s)	47, 130, 181, 212, 277, 607, 839
CviKI_1	RGCY	7 cut(s)	47, 130, 181, 212, 277, 607, 839
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	5 cut(s)	10, 48, 497, 530, 589
DpnI	GATC	5 cut(s)	5, 237, 327, 623, 648
DpnII	GATC	5 cut(s)	3, 235, 325, 621, 646
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	130, 802
EarI	CTCTTC	2 cut(s)	130, 802
Eco31I	GGTCTC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	387
EcoRV	GATATC	1 cut(s)	598
EcoT22I	ATGCAT	4 cut(s)	110, 543, 562, 739
FaeI	CATG	4 cut(s)	108, 296, 545, 807
FatI	CATG	4 cut(s)	104, 292, 541, 803
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	556
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	724
HaeIII	GGCC	2 cut(s)	181, 839
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	2 cut(s)	158, 535
HhaI	GCGC	1 cut(s)	725
Hin1I	GRCGYC	2 cut(s)	150, 546
Hin1II	CATG	4 cut(s)	108, 296, 545, 807
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	8 cut(s)	8, 101, 245, 351, 380, 479, 574, 661
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	541, 862
Hpy188I	TCNGA	4 cut(s)	13, 27, 412, 500
Hpy188III	TCNNGA	5 cut(s)	314, 329, 384, 571, 650
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	6 cut(s)	22, 320, 523, 665, 691, 850
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	9 cut(s)	108, 269, 365, 525, 541, 560, 737, 803, 859
HpyF3I	CTNAG	5 cut(s)	10, 48, 497, 530, 589
Hsp92I	GRCGYC	2 cut(s)	150, 546
Hsp92II	CATG	4 cut(s)	108, 296, 545, 807
HspAI	GCGC	1 cut(s)	723
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	3, 235, 325, 621, 646
LpnPI	CCDG	8 cut(s)	131, 327, 342, 369, 431, 439, 739, 757
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	440, 547
MalI	GATC	5 cut(s)	5, 237, 327, 623, 648
MboI	GATC	5 cut(s)	3, 235, 325, 621, 646
MboII	GAAGA	5 cut(s)	80, 147, 212, 774, 789
MfeI	CAATTG	2 cut(s)	174, 634
MluCI	AATT	7 cut(s)	21, 174, 387, 507, 634, 655, 665
MlyI	GAGTC	6 cut(s)	2, 95, 254, 389, 583, 670
MmeI	TCCRAC	1 cut(s)	390
Mph1103I	ATGCAT	4 cut(s)	110, 543, 562, 739
MroI	TCCGGA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	314
MunI	CAATTG	2 cut(s)	174, 634
Mva1269I	GAATGC	1 cut(s)	560
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	5 cut(s)	3, 235, 325, 621, 646
NlaIII	CATG	4 cut(s)	108, 296, 545, 807
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	4 cut(s)	110, 543, 562, 739
NspV	TTCGAA	2 cut(s)	133, 760
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	351, 479
PflMI	CCANNNNNTGG	1 cut(s)	376
PleI	GAGTC	6 cut(s)	2, 95, 253, 388, 582, 669
PpsI	GAGTC	6 cut(s)	2, 95, 253, 388, 582, 669
PspPI	GGNCC	2 cut(s)	179, 415
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	5 cut(s)	3, 235, 325, 621, 646
Sau96I	GGNCC	2 cut(s)	179, 415
SchI	GAGTC	6 cut(s)	2, 95, 254, 389, 583, 670
SetI	ASST	9 cut(s)	49, 132, 207, 279, 458, 507, 554, 676, 780
SfaNI	GCATC	1 cut(s)	117
SfuI	TTCGAA	2 cut(s)	133, 760
SinI	GGWCC	1 cut(s)	415
Sse9I	AATT	7 cut(s)	21, 174, 387, 507, 634, 655, 665
SsiI	CCGC	3 cut(s)	59, 214, 593
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	6 cut(s)	6, 133, 190, 516, 760, 830
TasI	AATT	7 cut(s)	21, 174, 387, 507, 634, 655, 665
TfiI	GAWTC	2 cut(s)	351, 479
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	5 cut(s)	105, 294, 309, 710, 832
TspGWI	ACGGA	3 cut(s)	286, 459, 572
TspRI	CASTG	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	3 cut(s)	21, 387, 655
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	4 cut(s)	110, 543, 562, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.