FvH4_3g11040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000731
Physical Location & Seq
Forward (+)
6507249 .. 6507896
648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11040.t1

Sequence Viewer

Length: 648 bp
ATGCAAAGAGGTAAAACTGCGAGTATAAAAGAGCAAATCGAAAACCTCAAGGTCCGTGGATTCTGTGTGGAGACACGAAAAGATAACAACCGGCCTAGAGGACATTGCTCTATAGTCATGGATCCGCCTTTTTATAAAAAGCTGAAAATTATGGGGGATCAAGAACGGATTTTCAGTATACTGACAGATCTCTATATCTTATCCGAAGTGAAGTTAACTTTTGGCACGAAGGGTTTGTTTTCTTGCTTGTACGAACATGGAGTAGAAGACACATGGAGAGCATTTGTTGAGACTATGAAAGGGAGAGCGACTTCTTCCTCCGATGCTTACTTGAAAGAGGAACTCAAGAGAATGGAGAAATGGCTAGACGATGTGGAGCCTTTGGCAAAAGAAATATATCAGGTGCTGATTGTTTGCCACAGACAGAAAGTGTCTAAGCCTCAAGGAGAATTTCATTTTGAAATTCTTCCCGACCGTTTTGGTTCGATTCTGATTAAGCTATCAAAGCTTCGGTCGAAATGGAAAGCTATTGCATCCTTGGAGCATGGAAATTTGTTAGATGAATTAGAAAAGCCAGAACTTGATTATGTAGAGATTTTGATTGAGGTACACAACTTTGTGGTCGTTCAGCAAGTATTGCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

25.06

Weight (kDa)

7.02

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 125
AclWI GGATC 3 cut(s) 116, 129, 165
AcsI RAATTY 3 cut(s) 449, 462, 550
AfaI GTAC 2 cut(s) 251, 609
AgsI TTSAA 2 cut(s) 334, 461
AluBI AGCT 4 cut(s) 142, 499, 508, 527
AluI AGCT 4 cut(s) 142, 499, 508, 527
Alw26I GTCTC 2 cut(s) 65, 284
AlwI GGATC 3 cut(s) 116, 129, 165
AlwNI CAGNNNCTG 1 cut(s) 406
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 3 cut(s) 449, 462, 550
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 65, 284
BfaI CTAG 2 cut(s) 96, 365
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 123, 378
BmsI GCATC 2 cut(s) 313, 542
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 32, 329, 426
BsaJI CCNNGG 2 cut(s) 55, 537
Bse118I RCCGGY 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 55, 537
BseGI GGATG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 103
Bsh1285I CGRYCG 2 cut(s) 475, 515
BshFI GGCC 1 cut(s) 94
BsiEI CGRYCG 2 cut(s) 475, 515
BsiSI CCGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 65, 284
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 121, 157, 187
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 123, 378
BspPI GGATC 3 cut(s) 116, 129, 165
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 55, 537
BssMI GATC 3 cut(s) 121, 157, 187
BssNAI GTATAC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 537
Bst1107I GTATAC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 637
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 533
BstKTI GATC 3 cut(s) 124, 160, 190
BstMAI GTCTC 2 cut(s) 65, 284
BstMBI GATC 3 cut(s) 121, 157, 187
BstMCI CGRYCG 2 cut(s) 475, 515
BstMWI GCNNNNNNNGC 2 cut(s) 505, 637
BstSFI CTRYAG 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 121, 187
BstYI RGATCY 2 cut(s) 121, 187
BstZ17I GTATAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 533
CaiI CAGNNNCTG 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 250, 608
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 118, 257, 273, 545
CviJI RGCY 9 cut(s) 94, 142, 364, 379, 439, 499, 508, 527, 574
CviKI_1 RGCY 9 cut(s) 94, 142, 364, 379, 439, 499, 508, 527, 574
CviQI GTAC 2 cut(s) 250, 608
DdeI CTNAG 1 cut(s) 435
DpnI GATC 3 cut(s) 123, 159, 189
DpnII GATC 3 cut(s) 121, 157, 187
EciI GGCGGA 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 121, 260, 276, 548
FatI CATG 4 cut(s) 117, 256, 272, 544
FblI GTMKAC 1 cut(s) 178
FokI GGATG 1 cut(s) 520
FspBI CTAG 2 cut(s) 96, 365
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 91
Hin1II CATG 4 cut(s) 121, 260, 276, 548
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 60, 487
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 179, 216, 610
Hpy188I TCNGA 3 cut(s) 205, 322, 492
Hpy188III TCNNGA 3 cut(s) 161, 346, 470
Hpy8I GTNNAC 3 cut(s) 179, 216, 610
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 4, 533, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 505, 637
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 4 cut(s) 121, 260, 276, 548
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 121, 157, 187
LmnI GCTCC 2 cut(s) 376, 541
LpnPI CCDG 3 cut(s) 104, 386, 588
LweI GCATC 2 cut(s) 313, 542
MaeI CTAG 2 cut(s) 96, 365
MalI GATC 3 cut(s) 123, 159, 189
MboI GATC 3 cut(s) 121, 157, 187
MboII GAAGA 3 cut(s) 278, 306, 458
MflI RGATCY 2 cut(s) 121, 187
MluCI AATT 5 cut(s) 147, 449, 462, 550, 563
MnlI CCTC 6 cut(s) 56, 92, 328, 331, 450, 598
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 215, 495
MspI CCGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 505, 637
NdeII GATC 3 cut(s) 121, 157, 187
NlaIII CATG 4 cut(s) 121, 260, 276, 548
NlaIV GGNNCC 2 cut(s) 123, 378
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 60, 487
PsiI TTATAA 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 123, 378
PspPI GGNCC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 2 cut(s) 121, 187
RsaI GTAC 2 cut(s) 251, 609
RsaNI GTAC 2 cut(s) 250, 608
SaqAI TTAA 2 cut(s) 215, 495
Sau3AI GATC 3 cut(s) 121, 157, 187
Sau96I GGNCC 1 cut(s) 52
SetI ASST 9 cut(s) 13, 48, 54, 144, 405, 501, 510, 529, 609
SfaNI GCATC 2 cut(s) 313, 542
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 3 cut(s) 47, 344, 441
SmoI CTYRAG 3 cut(s) 47, 344, 441
Sse9I AATT 5 cut(s) 147, 449, 462, 550, 563
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 96, 365
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 476
TaqI TCGA 3 cut(s) 39, 485, 515
TaqII GACCGA 1 cut(s) 501
TasI AATT 5 cut(s) 147, 449, 462, 550, 563
TfiI GAWTC 2 cut(s) 60, 487
Tru1I TTAA 2 cut(s) 215, 495
Tru9I TTAA 2 cut(s) 215, 495
TspDTI ATGAA 3 cut(s) 311, 443, 576
TspGWI ACGGA 2 cut(s) 44, 181
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 3 cut(s) 449, 462, 550
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 2 cut(s) 96, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.