FvH4_6g11790

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000731
Physical Location & Seq
Forward (+)
7036905 .. 7041903
4999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11790.t2

Sequence Viewer

Length: 1578 bp
ATGGCCGATTACAAATTCGTCCACGAAGGTAAAGAACACCCTCCTGAAATGAGCGAGATCGAAGAGGAAACCCAGTCGTTATATGAAGACGTTAGCATACAATCTGAAGATGAGGTCCCCAAGACACCTGAAGAATGGAAACGTAAATTGTATGAAGAGATCAAGGCTAAAATCGGCAGAGTGGATGATACAGACTCCTTCATCATCTCTTTACCAGATAGAAAATTAAAAGCTGAGTTGTGCATCTACAGAGTTCCGGAGAAACTTCGAAAAGTGAAGGAGGATGCCTACAGTCCCCGCGTTGTAGCAATTGGACCTTTCCATCGAGATAAAACTACCCTTGCACCAATGTCAGATCATAAATTGTCTTACATGGCATCCTTTCTTGCTCAGTATACAGGGGATAAAAAACAAGCCGCTAAACGCTTGAAGGATTGCATCGCTGCTATTCATGGATTGGACGAAGCGATTCGTCATTGCTACATAGAAAAGATGGAGAGCGAAATTAGTACTCATGATGAGCTCGCAGAAATGATGTTAGTTGATGGCTGCTTCATTTTGGAACTTTTTCTCAGAACCCACCTGAAGTTTGACTATATGTGGAAACATCAGTACGAATCTGATCCGGTTCTAAGAAGTCCTTGGACTATGGCCGCTATTAGGCATGATCTGGCATTGCTTGAAAACCAGATCCCCTTCTTTATTCTCGAAATACTGTACGGTTTTATCTGCCCTATTGTCAAAAAAAGGTGTAAAGCACCAAAGTCGGTCTCTAGCCTTGCGCTAAGTTTCTTCAAGCCTATGAGCAGAAAAGAGATCAGAGAAGAGGCTCCAGACACAGAAAGCAAGCATTTGCTTGATCTCTTGCACAAATTCTACTTCCCCCTAGTTCCTGCCGCCAGTGTCCTCTCAGCCAATGGCAACGATATAGAGTCCAACAATCCCAGAAGAAAACGAAATGGACGCCTTGCTAAAAAAAATTGGGGATTCGGTTACTGCGCTTCAGAGCTTATGGAGTCTGGAATCGAGTTTCGAAAGGAGCCGAGTAGTGAGGAAAGTTTGTTGAACATCACTTTCAATCGGCCGCCCAAGGATGGTGTAATCAATATACCACAACTGCTCATTCACGACACAACAAGTTTTTCACTCTTCAGGAACTTGATTGCTTTCGAGCAATGCAGTCTTAGCACTACGCAAAGCATCACATCATATGCCTTCCTCATGAAGAGCCTCATCAGTTCCTCACTGGACAGCAAATTGCTTGAGAGGAGAGGGATCATTGAGCACAGTTCTAATGGAGAAAAAGAGTACTTGGCTACTAAATTCCGAAGTATAGTAGATGGAGTTGATCTGATGGACGACTTCTGTTTCCGAGAGCTGTGCGATAGAGTGAATGAATACCAGAAGTCGTGGAACAATCCGAAAAGACGACTTAAAGTATTTTTCCGAAAACAGAAAAGGATCCTCTGGGCCAATTATCTCTCCAGTGCATGGAAAGTCATGTCAATCCTGGCGGCGGTGACCATTCTCATTTTGACTTCCTTGCAGACATTCTACACAATTCACCCTCGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

526

Amino Acids

60.86

Weight (kDa)

7.92

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 69 - 499 2.9e-103 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1491
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 7 cut(s) 298, 417, 654, 897, 1085, 1514, 1517
AclWI GGATC 5 cut(s) 617, 685, 1283, 1456, 1469
AcoI YGGCCR 3 cut(s) 3, 651, 1082
AcsI RAATTY 3 cut(s) 14, 872, 1322
AcuI CTGAAG 5 cut(s) 126, 150, 605, 987, 1135
AcyI GRCGYC 1 cut(s) 964
AfaI GTAC 4 cut(s) 511, 614, 719, 1310
AfiI CCNNNNNNNGG 4 cut(s) 660, 1094, 1491, 1516
AgsI TTSAA 5 cut(s) 430, 683, 796, 1066, 1078
AjnI CCWGG 1 cut(s) 1509
AluBI AGCT 4 cut(s) 233, 523, 1009, 1378
AluI AGCT 4 cut(s) 233, 523, 1009, 1378
Alw21I GWGCWC 2 cut(s) 525, 1287
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 5 cut(s) 617, 685, 1283, 1456, 1469
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 4 cut(s) 3, 651, 1082, 1470
ApeKI GCWGC 2 cut(s) 443, 549
ApoI RAATTY 3 cut(s) 14, 872, 1322
Asp700I GAANNNNTTC 2 cut(s) 468, 567
AspLEI GCGC 2 cut(s) 784, 1001
AspS9I GGNCC 3 cut(s) 115, 314, 1470
AsuHPI GGTGA 2 cut(s) 1531, 1556
AsuII TTCGAA 2 cut(s) 268, 1033
AvaII GGWCC 2 cut(s) 115, 314
BamHI GGATCC 1 cut(s) 1461
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 525, 1287
BbvI GCAGC 2 cut(s) 430, 536
BccI CCATC 6 cut(s) 330, 487, 539, 1088, 1334, 1348
BcgI CGANNNNNNTGC 4 cut(s) 747, 781, 1362, 1396
BciT130I CCWGG 1 cut(s) 1511
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 2 cut(s) 774, 887
BfmI CTRYAG 2 cut(s) 247, 289
BisI GCNGC 7 cut(s) 417, 444, 550, 654, 897, 1085, 1515
BlsI GCNGC 7 cut(s) 418, 445, 551, 655, 898, 1086, 1516
BmcAI AGTACT 2 cut(s) 511, 1310
Bme1390I CCNGG 1 cut(s) 1511
Bme18I GGWCC 2 cut(s) 115, 314
BmgT120I GGNCC 3 cut(s) 115, 314, 1470
BmiI GGNNCC 4 cut(s) 117, 831, 1041, 1463
BmrFI CCNGG 1 cut(s) 1511
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 5 cut(s) 252, 274, 386, 447, 1209
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 816, 1468
Bpu14I TTCGAA 2 cut(s) 268, 1033
BpuEI CTTGAG 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 2 cut(s) 641, 1089
BsaWI WCCGGW 2 cut(s) 256, 625
Bsc4I CCNNNNNNNGG 4 cut(s) 660, 1094, 1491, 1516
Bse1I ACTGG 4 cut(s) 73, 900, 1251, 1485
Bse3DI GCAATG 3 cut(s) 475, 674, 1181
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 1511
BseDI CCNNGG 2 cut(s) 641, 1089
BseGI GGATG 4 cut(s) 190, 289, 377, 1099
BseLI CCNNNNNNNGG 4 cut(s) 660, 1094, 1491, 1516
BseMI GCAATG 3 cut(s) 475, 674, 1181
BseMII CTCAG 4 cut(s) 225, 404, 586, 924
BseNI ACTGG 4 cut(s) 73, 900, 1251, 1485
BseRI GAGGAG 1 cut(s) 1282
BseX3I CGGCCG 1 cut(s) 1082
BseXI GCAGC 2 cut(s) 430, 536
Bsh1236I CGCG 1 cut(s) 300
Bsh1285I CGRYCG 1 cut(s) 1085
BshFI GGCC 4 cut(s) 5, 653, 1084, 1472
BsiEI CGRYCG 1 cut(s) 1085
BsiHKAI GWGCWC 2 cut(s) 525, 1287
BsiSI CCGG 2 cut(s) 257, 626
BslFI GGGAC 2 cut(s) 101, 279
BslI CCNNNNNNNGG 4 cut(s) 660, 1094, 1491, 1516
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 2 cut(s) 101, 279
BsnI GGCC 4 cut(s) 5, 653, 1084, 1472
Bso31I GGTCTC 1 cut(s) 775
Bsp119I TTCGAA 2 cut(s) 268, 1033
Bsp1286I GDGCHC 2 cut(s) 525, 1287
Bsp13I TCCGGA 1 cut(s) 256
BspACI CCGC 7 cut(s) 298, 417, 654, 897, 1085, 1514, 1517
BspANI GGCC 4 cut(s) 5, 653, 1084, 1472
BspCNI CTCAG 4 cut(s) 226, 403, 585, 923
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 2 cut(s) 514, 1221
BspLI GGNNCC 4 cut(s) 117, 831, 1041, 1463
BspPI GGATC 5 cut(s) 617, 685, 1283, 1456, 1469
BspQI GCTCTTC 1 cut(s) 1220
BspT104I TTCGAA 2 cut(s) 268, 1033
BspTNI GGTCTC 1 cut(s) 775
BsrDI GCAATG 3 cut(s) 475, 674, 1181
BsrI ACTGG 4 cut(s) 73, 900, 1251, 1485
BssECI CCNNGG 2 cut(s) 641, 1089
BssNAI GTATAC 1 cut(s) 396
BssNI GRCGYC 1 cut(s) 964
BssT1I CCWWGG 2 cut(s) 641, 1089
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 1511
Bst4CI ACNGT 4 cut(s) 293, 717, 722, 1289
Bst6I CTCTTC 5 cut(s) 57, 150, 819, 1154, 1220
BstACI GRCGYC 1 cut(s) 964
BstBI TTCGAA 2 cut(s) 268, 1033
BstC8I GCNNGC 2 cut(s) 525, 848
BstDEI CTNAG 7 cut(s) 234, 390, 572, 632, 785, 910, 1184
BstEII GGTNACC 1 cut(s) 1519
BstF5I GGATG 4 cut(s) 190, 289, 377, 1099
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 2 cut(s) 784, 1001
BstMAI GTCTC 1 cut(s) 775
BstMCI CGRYCG 1 cut(s) 1085
BstMWI GCNNNNNNNGC 1 cut(s) 1185
BstNI CCWGG 1 cut(s) 1511
BstPI GGTNACC 1 cut(s) 1519
BstSCI CCNGG 1 cut(s) 1509
BstSFI CTRYAG 2 cut(s) 247, 289
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 430, 536
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 690, 1461
BstYI RGATCY 2 cut(s) 690, 1461
BstZ17I GTATAC 1 cut(s) 396
BstZI CGGCCG 1 cut(s) 1082
BsuRI GGCC 4 cut(s) 5, 653, 1084, 1472
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 4 cut(s) 190, 289, 377, 1099
BtsIMutI CAGTG 3 cut(s) 907, 1244, 1492
Cac8I GCNNGC 2 cut(s) 525, 848
CciI TCATGA 2 cut(s) 514, 1221
CfoI GCGC 2 cut(s) 784, 1001
Cfr13I GGNCC 3 cut(s) 115, 314, 1470
CseI GACGC 1 cut(s) 972
Csp6I GTAC 4 cut(s) 510, 613, 718, 1309
CviAII CATG 7 cut(s) 373, 452, 515, 665, 1222, 1491, 1501
CviQI GTAC 4 cut(s) 510, 613, 718, 1309
DdeI CTNAG 7 cut(s) 234, 390, 572, 632, 785, 910, 1184
EaeI YGGCCR 3 cut(s) 3, 651, 1082
EagI CGGCCG 1 cut(s) 1082
Eam1104I CTCTTC 5 cut(s) 57, 150, 819, 1154, 1220
EarI CTCTTC 5 cut(s) 57, 150, 819, 1154, 1220
Ecl136II GAGCTC 1 cut(s) 523
EclXI CGGCCG 1 cut(s) 1082
Eco130I CCWWGG 2 cut(s) 641, 1089
Eco24I GRGCYC 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 775
Eco47I GGWCC 2 cut(s) 115, 314
Eco52I CGGCCG 1 cut(s) 1082
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 5 cut(s) 126, 150, 605, 987, 1135
Eco91I GGTNACC 1 cut(s) 1519
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 1519
EcoRII CCWGG 1 cut(s) 1509
EcoT14I CCWWGG 2 cut(s) 641, 1089
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 641, 1089
FaeI CATG 7 cut(s) 376, 455, 518, 668, 1225, 1494, 1504
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 2 cut(s) 101, 279
FatI CATG 7 cut(s) 372, 451, 514, 664, 1221, 1490, 1500
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 1210
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 7 cut(s) 417, 444, 550, 654, 897, 1085, 1515
FokI GGATG 4 cut(s) 197, 296, 364, 1106
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 7 cut(s) 417, 444, 550, 654, 897, 1085, 1515
FspBI CTAG 2 cut(s) 774, 887
GlaI GCGC 2 cut(s) 783, 1000
GluI GCNGC 7 cut(s) 417, 444, 550, 654, 897, 1085, 1515
GsuI CTGGAG 2 cut(s) 816, 1468
HaeIII GGCC 4 cut(s) 5, 653, 1084, 1472
HapII CCGG 2 cut(s) 257, 626
HgaI GACGC 1 cut(s) 972
HhaI GCGC 2 cut(s) 784, 1001
Hin1I GRCGYC 1 cut(s) 964
Hin1II CATG 7 cut(s) 376, 455, 518, 668, 1225, 1494, 1504
Hin6I GCGC 2 cut(s) 782, 999
HinP1I GCGC 2 cut(s) 782, 999
HinfI GANTC 7 cut(s) 194, 469, 617, 932, 987, 1016, 1023
HpaII CCGG 2 cut(s) 257, 626
HphI GGTGA 2 cut(s) 1531, 1556
Hpy166II GTNNAC 2 cut(s) 22, 396
Hpy8I GTNNAC 2 cut(s) 22, 396
HpyAV CCTTC 6 cut(s) 20, 208, 271, 424, 706, 1225
HpyCH4III ACNGT 4 cut(s) 293, 717, 722, 1289
HpyCH4IV ACGT 2 cut(s) 90, 142
HpyCH4V TGCA 7 cut(s) 243, 344, 438, 868, 1179, 1490, 1546
HpyF10VI GCNNNNNNNGC 1 cut(s) 1185
HpyF3I CTNAG 7 cut(s) 234, 390, 572, 632, 785, 910, 1184
HpySE526I ACGT 2 cut(s) 90, 142
Hsp92I GRCGYC 1 cut(s) 964
Hsp92II CATG 7 cut(s) 376, 455, 518, 668, 1225, 1494, 1504
HspAI GCGC 2 cut(s) 782, 999
Kpn2I TCCGGA 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 1220
LmnI GCTCC 2 cut(s) 835, 1039
Lsp1109I GCAGC 2 cut(s) 430, 536
LweI GCATC 5 cut(s) 252, 274, 386, 447, 1209
MaeI CTAG 2 cut(s) 774, 887
MaeII ACGT 2 cut(s) 90, 142
MaeIII GTNAC 2 cut(s) 992, 1519
MfeI CAATTG 2 cut(s) 309, 1573
MflI RGATCY 2 cut(s) 690, 1461
MhlI GDGCHC 2 cut(s) 525, 1287
MlyI GAGTC 3 cut(s) 188, 941, 1025
MmeI TCCRAC 1 cut(s) 960
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 2 cut(s) 468, 567
MseI TTAA 2 cut(s) 227, 1434
MspI CCGG 2 cut(s) 257, 626
MspR9I CCNGG 1 cut(s) 1511
MunI CAATTG 2 cut(s) 309, 1573
MvaI CCWGG 1 cut(s) 1511
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 1185
NdeI CATATG 1 cut(s) 1210
NlaIII CATG 7 cut(s) 376, 455, 518, 668, 1225, 1494, 1504
NlaIV GGNNCC 4 cut(s) 117, 831, 1041, 1463
NmeAIII GCCGAG 1 cut(s) 1068
NmuCI GTSAC 1 cut(s) 1519
NspV TTCGAA 2 cut(s) 268, 1033
PagI TCATGA 2 cut(s) 514, 1221
PciSI GCTCTTC 1 cut(s) 1220
PdmI GAANNNNTTC 2 cut(s) 468, 567
PfeI GAWTC 4 cut(s) 469, 617, 987, 1023
PflMI CCANNNNNTGG 1 cut(s) 1491
PkrI GCNGC 7 cut(s) 418, 445, 551, 655, 898, 1086, 1516
PleI GAGTC 3 cut(s) 188, 940, 1024
PpsI GAGTC 3 cut(s) 188, 940, 1024
PpuMI RGGWCCY 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 1509
PspEI GGTNACC 1 cut(s) 1519
PspGI CCWGG 1 cut(s) 1509
PspN4I GGNNCC 4 cut(s) 117, 831, 1041, 1463
PspPI GGNCC 3 cut(s) 115, 314, 1470
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 2 cut(s) 690, 1461
RsaI GTAC 4 cut(s) 511, 614, 719, 1310
RsaNI GTAC 4 cut(s) 510, 613, 718, 1309
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 1220
SaqAI TTAA 2 cut(s) 227, 1434
SatI GCNGC 7 cut(s) 417, 444, 550, 654, 897, 1085, 1515
Sau96I GGNCC 3 cut(s) 115, 314, 1470
ScaI AGTACT 2 cut(s) 511, 1310
SchI GAGTC 3 cut(s) 188, 941, 1025
ScrFI CCNGG 1 cut(s) 1511
SduI GDGCHC 2 cut(s) 525, 1287
SfaNI GCATC 5 cut(s) 252, 274, 386, 447, 1209
SfcI CTRYAG 2 cut(s) 247, 289
SfuI TTCGAA 2 cut(s) 268, 1033
SinI GGWCC 2 cut(s) 115, 314
SmlI CTYRAG 1 cut(s) 1262
SmoI CTYRAG 1 cut(s) 1262
SsiI CCGC 7 cut(s) 298, 417, 654, 897, 1085, 1514, 1517
SspMI CTAG 2 cut(s) 774, 887
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 1509
StyI CCWWGG 2 cut(s) 641, 1089
TaaI ACNGT 4 cut(s) 293, 717, 722, 1289
TaiI ACGT 2 cut(s) 93, 145
TaqI TCGA 7 cut(s) 60, 268, 325, 708, 1026, 1033, 1170
TaqII GACCGA 1 cut(s) 757
TatI WGTACW 2 cut(s) 509, 1308
TauI GCSGC 5 cut(s) 419, 656, 899, 1087, 1517
TfiI GAWTC 4 cut(s) 469, 617, 987, 1023
Tru1I TTAA 2 cut(s) 227, 1434
Tru9I TTAA 2 cut(s) 227, 1434
TscAI CASTG 3 cut(s) 907, 1251, 1492
TseFI GTSAC 1 cut(s) 1519
TseI GCWGC 2 cut(s) 443, 549
Tsp45I GTSAC 1 cut(s) 1519
TspDTI ATGAA 7 cut(s) 99, 168, 190, 440, 544, 1238, 1410
TspRI CASTG 3 cut(s) 907, 1251, 1492
Van91I CCANNNNNTGG 1 cut(s) 1491
VpaK11BI GGWCC 2 cut(s) 115, 314
XapI RAATTY 3 cut(s) 14, 872, 1322
XmiI GTMKAC 1 cut(s) 395
XmnI GAANNNNTTC 2 cut(s) 468, 567
XspI CTAG 2 cut(s) 774, 887
ZrmI AGTACT 2 cut(s) 511, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.