Rorug05G0038000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000731
Physical Location & Seq
Reverse (-)
2948958 .. 2949779
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0038000.1

Sequence Viewer

Length: 822 bp
ATGAATCCTACTGATATCAGCATATTAATCATCTTTCTTCTTCTTCCTCCTCCCTGTTGCATTGCCTCTGATGCCGTTACTCCAAACCAGCCCATTAGAGACGGCGACATTCTTATCTCTACAGGAAAAAAGTTTGCACTTGGCTTCTTTAGCCCAGGAAATTCTCGCAAGCGTTATGTTGGAGTTTGGTATAACAATGTTCCAAACCGAACCATTGTCTGGGTTGCAAACAGAGACAATCCAGTCAATGATACCTCTGGACTCCTAGCAGTCCAAGGAAATGGAGGTCTTGTCATCTACGGAAAGAACCAAAGTAACCCTCTTTGGTCCGCTAGTGTTACTCTTTCTTCACCAAACAATTCTATTGCCAAGCTTTTTGATACAGGAAATCTTGTTTTGCTTGAGAATGAGAGCCAAAAGGTAATATGGCAAGGCTTCGATTACCCCTCAAATACTCTCCTTCCATATATGAAACTTGGATTCAACAGGCTGTCCGGGATGAACTGGTTTCAAACATCTTGGAAGTCCCAAGATGACCCAGGAACCGGCACCTGTTCGTTTCGGATTAGCCCAAGTGGGTTCCCACAACTAGTTTTGCACCAAGGTGGAGCTCCCCGGTGGCGGACTCTAATCGGATTTTGGGCCGGGCAGAGATGGAGGAGTACGGTGAGTTACATCAACAATCAAGATGAGGTTTCCATAATGTATGTTCCGTGTTTGACTCCAAAACCAGCTTGGCTGCAAACTGTCTCTTTTGAGTGCACAGGCGTGCCAGCACCGTGGGGTGCAGTCGTCGGGGAGTCGCTTGACCTGACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

273

Amino Acids

30.06

Weight (kDa)

8.6

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 175 8.9e-34 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 2 cut(s) 330, 622
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 3 cut(s) 219, 545, 621
AgsI TTSAA 2 cut(s) 484, 512
AhlI ACTAGT 1 cut(s) 589
AjnI CCWGG 2 cut(s) 154, 538
AleI CACNNNNGTG 2 cut(s) 603, 767
AluBI AGCT 3 cut(s) 373, 611, 734
AluI AGCT 3 cut(s) 373, 611, 734
Alw21I GWGCWC 2 cut(s) 613, 764
Alw26I GTCTC 3 cut(s) 93, 228, 754
Alw44I GTGCAC 1 cut(s) 760
AoxI GGCC 1 cut(s) 642
ApaLI GTGCAC 1 cut(s) 760
ApeKI GCWGC 1 cut(s) 739
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 327, 642
AsuC2I CCSGG 3 cut(s) 496, 616, 646
AsuHPI GGTGA 2 cut(s) 342, 679
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 613
Bbv12I GWGCWC 2 cut(s) 613, 764
BbvI GCAGC 1 cut(s) 726
BccI CCATC 1 cut(s) 648
BceAI ACGGC 2 cut(s) 59, 118
BciT130I CCWGG 2 cut(s) 156, 540
BcnI CCSGG 3 cut(s) 496, 616, 646
BcoDI GTCTC 3 cut(s) 93, 228, 754
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 3 cut(s) 266, 333, 590
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 740
BlsI GCNGC 1 cut(s) 741
Bme1390I CCNGG 5 cut(s) 156, 496, 540, 616, 646
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 327, 642
BmiI GGNNCC 3 cut(s) 544, 550, 581
BmrFI CCNGG 5 cut(s) 156, 496, 540, 616, 646
BmsI GCATC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 3 cut(s) 496, 616, 646
BsaJI CCNNGG 6 cut(s) 154, 274, 538, 601, 614, 779
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 545, 621
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 242, 509
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 156, 540
BseDI CCNNGG 6 cut(s) 154, 274, 538, 601, 614, 779
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 219, 545, 621
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 242, 509
BseRI GAGGAG 2 cut(s) 39, 673
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 807
BshFI GGCC 1 cut(s) 644
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 2 cut(s) 613, 764
BsiSI CCGG 4 cut(s) 495, 546, 616, 645
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 3 cut(s) 219, 545, 621
BsmAI GTCTC 3 cut(s) 93, 228, 754
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 613, 764
BspACI CCGC 2 cut(s) 330, 622
BspANI GGCC 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 544, 550, 581
BspT107I GGYRCC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 2 cut(s) 242, 509
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 6 cut(s) 154, 274, 538, 601, 614, 779
BssT1I CCWWGG 2 cut(s) 274, 601
Bst2UI CCWGG 2 cut(s) 156, 540
Bst4CI ACNGT 3 cut(s) 667, 748, 780
BstC8I GCNNGC 3 cut(s) 170, 770, 774
BstDSI CCRYGG 1 cut(s) 779
BstF5I GGATG 1 cut(s) 504
BstMAI GTCTC 3 cut(s) 93, 228, 754
BstMWI GCNNNNNNNGC 2 cut(s) 71, 150
BstNI CCWGG 2 cut(s) 156, 540
BstSCI CCNGG 5 cut(s) 154, 494, 538, 614, 644
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 726
BstXI CCANNNNNNTGG 2 cut(s) 281, 780
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 170, 770, 774
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 327, 642
Csp6I GTAC 1 cut(s) 663
CviQI GTAC 1 cut(s) 663
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EciI GGCGGA 1 cut(s) 637
Ecl136II GAGCTC 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 274, 601
Eco24I GRGCYC 1 cut(s) 613
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 327
Eco53kI GAGCTC 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 154, 538
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 274, 601
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 2 cut(s) 274, 601
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 9 cut(s) 23, 177, 192, 427, 466, 468, 470, 701, 708
FaqI GGGAC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 740
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 1 cut(s) 740
FspBI CTAG 3 cut(s) 266, 333, 590
GluI GCNGC 1 cut(s) 740
HaeIII GGCC 1 cut(s) 644
HapII CCGG 4 cut(s) 495, 546, 616, 645
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 6 cut(s) 4, 261, 480, 625, 721, 800
HpaII CCGG 4 cut(s) 495, 546, 616, 645
HphI GGTGA 2 cut(s) 342, 679
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 3 cut(s) 70, 564, 635
Hpy188III TCNNGA 3 cut(s) 258, 686, 819
Hpy8I GTNNAC 1 cut(s) 762
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 3 cut(s) 667, 748, 780
HpyCH4V TGCA 7 cut(s) 60, 137, 227, 598, 742, 762, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 150
LmnI GCTCC 2 cut(s) 608, 616
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 266, 333, 590
MaeIII GTNAC 4 cut(s) 76, 314, 337, 671
MboII GAAGA 4 cut(s) 29, 32, 35, 339
MhlI GDGCHC 2 cut(s) 613, 764
MluCI AATT 2 cut(s) 160, 358
MlyI GAGTC 4 cut(s) 255, 619, 715, 809
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 9 cut(s) 57, 60, 76, 265, 278, 330, 457, 651, 685
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 603, 767
MspI CCGG 4 cut(s) 495, 546, 616, 645
MspR9I CCNGG 5 cut(s) 156, 496, 540, 616, 646
MvaI CCWGG 2 cut(s) 156, 540
MwoI GCNNNNNNNGC 2 cut(s) 71, 150
NciI CCSGG 3 cut(s) 496, 616, 646
NlaIV GGNNCC 3 cut(s) 544, 550, 581
OliI CACNNNNGTG 2 cut(s) 603, 767
PfeI GAWTC 2 cut(s) 4, 480
PflMI CCANNNNNTGG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 494
PkrI GCNGC 1 cut(s) 741
PleI GAGTC 4 cut(s) 255, 619, 715, 808
PpsI GAGTC 4 cut(s) 255, 619, 715, 808
PshBI ATTAAT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 154, 538
PspGI CCWGG 2 cut(s) 154, 538
PspN4I GGNNCC 3 cut(s) 544, 550, 581
PspPI GGNCC 2 cut(s) 327, 642
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 2 cut(s) 603, 767
SacI GAGCTC 1 cut(s) 613
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 740
Sau96I GGNCC 2 cut(s) 327, 642
SchI GAGTC 4 cut(s) 255, 619, 715, 809
ScrFI CCNGG 5 cut(s) 156, 496, 540, 616, 646
SduI GDGCHC 2 cut(s) 613, 764
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 603, 767
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 589
Sse9I AATT 2 cut(s) 160, 358
SsiI CCGC 2 cut(s) 330, 622
SspMI CTAG 3 cut(s) 266, 333, 590
SstI GAGCTC 1 cut(s) 613
StyD4I CCNGG 5 cut(s) 154, 494, 538, 614, 644
StyI CCWWGG 2 cut(s) 274, 601
TaaI ACNGT 3 cut(s) 667, 748, 780
TaqI TCGA 1 cut(s) 438
TasI AATT 2 cut(s) 160, 358
TfiI GAWTC 2 cut(s) 4, 480
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 1 cut(s) 739
TspDTI ATGAA 3 cut(s) 17, 485, 515
TspGWI ACGGA 2 cut(s) 315, 702
Van91I CCANNNNNTGG 1 cut(s) 219
VneI GTGCAC 1 cut(s) 760
VpaK11BI GGWCC 1 cut(s) 327
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XspI CTAG 3 cut(s) 266, 333, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.