Rw5G011400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000731
Physical Location & Seq
Forward (+)
12964516 .. 12968843
4328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011400.1

Sequence Viewer

Length: 744 bp
ATGGCCTTGTCCTCTATGCGGAATCTGGCTCGGTCCGGCCTCCCTCTTCCGTTATTGAGGACCCAGTTCGAAAGAACCCGGCTTGAAAGGACCCAGTTCGTCAGGACCTTTTGGAAGAGTAGCAAAGGGCGAATGGAAAAAGACTTGGAAGAGAAGCTGAAAAAGCTCATTGACCAGGGGATTAAAGTTGAGATCGTCGAAGATGGCAACCAGCCAAGAGGCACGTACACTGTAGAAGTACATCCCCACACTTTGGAGGTGATGGAAGTTTGGGGCAAGCAGATGAAGATTTTAGGGATGCTGAGTGATCTATACATTCTTGCTGAAGTCAAGTTTGTTAAGATCCGGTTTGTTGGCATCCTTGTACCAGCACGGCCCAATTGCCACCTGGAGAGCAGTAGCTCAGAGAATGAAAGGGAAGCTATTGATTCTGCTCATGAGCTAAAGATAACAGAGACATGGCTAGATAGGATTGGACCATTGGCCAAAGAAGTCTCTACTGTTCTCATCGTTCATCAGAAACAAAAGAAGACAGCCTCACAACCTGAAGAAGGTAGCCTAGAGGTCCTCCCCCATGACTTTGGATCCATTTTGATCAAACTTTCCCAACTTCGTTTGAAATGGAAGGTCATTGCTTCTTTGGAGAGTGTAACACTATTGGATGACTCTGAGATGGAAGACATGAATGAGATAGAATCGATAATCAGAGATGTACACAAGGTTGTCACTATGCCAAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.28

Weight (kDa)

6.68

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 1 cut(s) 19
AclWI GGATC 3 cut(s) 337, 579, 592
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 2 cut(s) 345, 567
AfaI GTAC 4 cut(s) 227, 240, 366, 714
AfiI CCNNNNNNNGG 3 cut(s) 18, 253, 551
AgsI TTSAA 2 cut(s) 86, 619
AjnI CCWGG 2 cut(s) 174, 387
AluBI AGCT 5 cut(s) 157, 166, 402, 422, 442
AluI AGCT 5 cut(s) 157, 166, 402, 422, 442
Alw26I GTCTC 2 cut(s) 449, 499
AlwI GGATC 3 cut(s) 337, 579, 592
AoxI GGCC 4 cut(s) 3, 37, 374, 483
AspS9I GGNCC 7 cut(s) 33, 60, 90, 105, 375, 476, 565
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 69
AvaII GGWCC 6 cut(s) 33, 60, 90, 105, 476, 565
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 584
BbsI GAAGAC 2 cut(s) 536, 684
BccI CCATC 3 cut(s) 197, 256, 667
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 2 cut(s) 176, 389
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 449, 499
BfaI CTAG 2 cut(s) 464, 560
BfmI CTRYAG 1 cut(s) 231
Bme1390I CCNGG 3 cut(s) 79, 176, 389
Bme18I GGWCC 6 cut(s) 33, 60, 90, 105, 476, 565
BmgT120I GGNCC 7 cut(s) 33, 60, 90, 105, 375, 476, 565
BmiI GGNNCC 3 cut(s) 62, 92, 586
BmrFI CCNGG 3 cut(s) 79, 176, 389
BmrI ACTGGG 2 cut(s) 58, 88
BmsI GCATC 2 cut(s) 288, 366
BmuI ACTGGG 2 cut(s) 58, 88
BpiI GAAGAC 2 cut(s) 536, 684
BpmI CTGGAG 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 698
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 253, 551
Bse1I ACTGG 2 cut(s) 64, 94
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 2 cut(s) 176, 389
BseCI ATCGAT 1 cut(s) 698
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 4 cut(s) 241, 303, 357, 667
BseLI CCNNNNNNNGG 3 cut(s) 18, 253, 551
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 3 cut(s) 293, 417, 660
BseNI ACTGG 2 cut(s) 64, 94
BshFI GGCC 4 cut(s) 5, 39, 376, 485
BshVI ATCGAT 1 cut(s) 698
BsiSI CCGG 3 cut(s) 36, 79, 346
BslI CCNNNNNNNGG 3 cut(s) 18, 253, 551
BsmAI GTCTC 2 cut(s) 449, 499
BsnI GGCC 4 cut(s) 5, 39, 376, 485
Bsp119I TTCGAA 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 5 cut(s) 192, 307, 342, 584, 594
BspACI CCGC 1 cut(s) 19
BspANI GGCC 4 cut(s) 5, 39, 376, 485
BspCNI CTCAG 3 cut(s) 294, 416, 661
BspDI ATCGAT 1 cut(s) 698
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 62, 92, 586
BspPI GGATC 3 cut(s) 337, 579, 592
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 630
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 2 cut(s) 64, 94
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 5 cut(s) 192, 307, 342, 584, 594
Bst2UI CCWGG 2 cut(s) 176, 389
Bst4CI ACNGT 2 cut(s) 232, 502
Bst6I CTCTTC 3 cut(s) 51, 110, 144
BstAUI TGTACA 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 302, 403, 669
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 4 cut(s) 241, 303, 357, 667
BstKTI GATC 5 cut(s) 195, 310, 345, 587, 597
BstMAI GTCTC 2 cut(s) 449, 499
BstMBI GATC 5 cut(s) 192, 307, 342, 584, 594
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 176, 389
BstSCI CCNGG 3 cut(s) 77, 174, 387
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 2 cut(s) 536, 684
BstX2I RGATCY 2 cut(s) 342, 584
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 2 cut(s) 342, 584
Bsu15I ATCGAT 1 cut(s) 698
BsuRI GGCC 4 cut(s) 5, 39, 376, 485
BsuTUI ATCGAT 1 cut(s) 698
BtsCI GGATG 4 cut(s) 241, 303, 357, 667
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 278
CciI TCATGA 1 cut(s) 436
Cfr13I GGNCC 7 cut(s) 33, 60, 90, 105, 375, 476, 565
ClaI ATCGAT 1 cut(s) 698
CpoI CGGWCCG 1 cut(s) 33
Csp6I GTAC 4 cut(s) 226, 239, 365, 713
CspI CGGWCCG 1 cut(s) 33
CviAII CATG 4 cut(s) 437, 459, 575, 682
CviQI GTAC 4 cut(s) 226, 239, 365, 713
DdeI CTNAG 3 cut(s) 302, 403, 669
DpnI GATC 5 cut(s) 194, 309, 344, 586, 596
DpnII GATC 5 cut(s) 192, 307, 342, 584, 594
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 51, 110, 144
EarI CTCTTC 3 cut(s) 51, 110, 144
Eco47I GGWCC 6 cut(s) 33, 60, 90, 105, 476, 565
Eco57I CTGAAG 2 cut(s) 345, 567
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoO109I RGGNCCY 4 cut(s) 60, 90, 105, 565
EcoRII CCWGG 2 cut(s) 174, 387
FaeI CATG 4 cut(s) 440, 462, 578, 685
FaiI YATR 7 cut(s) 17, 313, 438, 460, 576, 683, 731
FatI CATG 4 cut(s) 436, 458, 574, 681
FbaI TGATCA 1 cut(s) 594
FokI GGATG 4 cut(s) 228, 310, 344, 674
FspBI CTAG 2 cut(s) 464, 560
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 4 cut(s) 5, 39, 376, 485
HapII CCGG 3 cut(s) 36, 79, 346
Hin1II CATG 4 cut(s) 440, 462, 578, 685
HinfI GANTC 4 cut(s) 22, 428, 665, 695
HpaII CCGG 3 cut(s) 36, 79, 346
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 228, 715
Hpy188I TCNGA 4 cut(s) 406, 519, 670, 707
Hpy188III TCNNGA 2 cut(s) 103, 437
Hpy8I GTNNAC 2 cut(s) 228, 715
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 545, 619
HpyCH4III ACNGT 2 cut(s) 232, 502
HpyCH4IV ACGT 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 302, 403, 669
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 4 cut(s) 440, 462, 578, 685
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 5 cut(s) 192, 307, 342, 584, 594
LweI GCATC 2 cut(s) 288, 366
MaeI CTAG 2 cut(s) 464, 560
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 649, 724
MalI GATC 5 cut(s) 194, 309, 344, 586, 596
MboI GATC 5 cut(s) 192, 307, 342, 584, 594
MboII GAAGA 8 cut(s) 38, 127, 161, 212, 298, 541, 560, 689
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 2 cut(s) 342, 584
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 1 cut(s) 379
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 659
MnlI CCTC 9 cut(s) 22, 50, 51, 54, 212, 250, 547, 556, 578
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 3 cut(s) 183, 339, 742
Msp20I TGGCCA 1 cut(s) 485
MspI CCGG 3 cut(s) 36, 79, 346
MspR9I CCNGG 3 cut(s) 79, 176, 389
MunI CAATTG 1 cut(s) 379
MvaI CCWGG 2 cut(s) 176, 389
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 79
NdeII GATC 5 cut(s) 192, 307, 342, 584, 594
NlaIII CATG 4 cut(s) 440, 462, 578, 685
NlaIV GGNNCC 3 cut(s) 62, 92, 586
NmuCI GTSAC 1 cut(s) 724
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 436
PfeI GAWTC 3 cut(s) 22, 428, 695
PflMI CCANNNNNTGG 1 cut(s) 253
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Ppu21I YACGTR 1 cut(s) 225
PpuMI RGGWCCY 4 cut(s) 60, 90, 105, 565
Psp5II RGGWCCY 4 cut(s) 60, 90, 105, 565
Psp6I CCWGG 2 cut(s) 174, 387
PspGI CCWGG 2 cut(s) 174, 387
PspN4I GGNNCC 3 cut(s) 62, 92, 586
PspPI GGNCC 7 cut(s) 33, 60, 90, 105, 375, 476, 565
PspPPI RGGWCCY 4 cut(s) 60, 90, 105, 565
PsuI RGATCY 2 cut(s) 342, 584
RsaI GTAC 4 cut(s) 227, 240, 366, 714
RsaNI GTAC 4 cut(s) 226, 239, 365, 713
Rsr2I CGGWCCG 1 cut(s) 33
RsrII CGGWCCG 1 cut(s) 33
SaqAI TTAA 3 cut(s) 183, 339, 742
Sau3AI GATC 5 cut(s) 192, 307, 342, 584, 594
Sau96I GGNCC 7 cut(s) 33, 60, 90, 105, 375, 476, 565
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 3 cut(s) 79, 176, 389
SfaNI GCATC 2 cut(s) 288, 366
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 69
SinI GGWCC 6 cut(s) 33, 60, 90, 105, 476, 565
Sse9I AATT 1 cut(s) 379
SsiI CCGC 1 cut(s) 19
SspMI CTAG 2 cut(s) 464, 560
StyD4I CCNGG 3 cut(s) 77, 174, 387
TaaI ACNGT 2 cut(s) 232, 502
TaiI ACGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 69, 198, 698
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 379
TatI WGTACW 2 cut(s) 238, 712
TfiI GAWTC 3 cut(s) 22, 428, 695
Tru1I TTAA 3 cut(s) 183, 339, 742
Tru9I TTAA 3 cut(s) 183, 339, 742
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 4 cut(s) 299, 426, 503, 698
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 6 cut(s) 33, 60, 90, 105, 476, 565
XagI CCTNNNNNAGG 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XspI CTAG 2 cut(s) 464, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.