Prupe.6G273200_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000731
Physical Location & Seq
Forward (+)
25833037 .. 25834339
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G273200.1

Sequence Viewer

Length: 1173 bp
ATGGAAGAATTTAAATTGTCTTACATGCTATCCCTTCTTCATCAGCAATCAAGAGCAGCTGAAGATGCTGAAGTTGCAGAAGAATACCACACGCAACCTGCTACAAAATGCTTGGAAGAGTGCATGGATGCTATCTATGGTTTAGATGAAGTGGTTCGTCAATGCTACACTGAAAAGATCAACTACAAAGAAGATGAGCTTGCAGAAATAGTTTTACTGGATGGTTGCTTCATATTGGAACTTTTCCTCCGGTGTGATCGAAACTTGAAGTATATGAAAAGTGCTTGGACGATTGCAGGCCTTCAGCATGATCTTGCATTACTTGAAAACCAGATCCCATTCTTTGTTCTCGAACTTTTATACAATACTATCAAGCCTCATATCACCAGGTGTAAACTACCACAGTCGGTTGGTAGCCTTGCTCTTAACTTCTTTCATCCTCTTGAAATCGATTCAGACAACGAACAACATTCTGCCTTACAACGAGTAACTTCACGGCTTCTCGGCAAGATAAAAGGAGAAAACCAAACTCCTCCATGCTTGCCTAGTCATCATCAACGTGACCAAGCAAGCAAAGGGAAGTGGGAATTCAATTATTGCGCTTCAGAACTTTTGGAGTCTGGAATTGAGTTCAAAGTTGGACCAAGCACCCAGCAATATTTGTTGGACATAAAGTTCGAGGATGGGGTGATTATAATTCCCCAGCTGCGCATTCATGAGACTACGAATTCACTCTTGAAGAATCAGATTGCTTACGAGCAATGCTGTCTCCGGAGCACGCATAGGGTTACATCATACGTCTTCCTCTTGAAGAGTCTAATCAGGACCTCAGGGGATAGCAAACTGCTTCAGGCAAGAAATATTATAGAGCACAATAATCTGATTAGAGACAAAGAATTTTTGAGTCAATTTGAAAGTGTTCTAGATCAAGTTGTTATGAAGGACAACTTTTGCTATGCTGCTTTGCTCCACCAAGTGAACAAATATTGTAAGTCCTGGTACAGTTTTAGCAGAGTTCGAGTATTTCTGTGGGTGCAATTTCAAAGACAGAAAAGAATCCTCTGTGACACATATTTTTCTCCTCCGTGGAAAGTCATATCACTCGTGGGTGGAGTTTTCCTTCTCCTTCTCACTTCATTGCAGACATACTATACAATTTATCCTCGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

391

Amino Acids

45.44

Weight (kDa)

6.36

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
Acc16I TGCGCA 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 771
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 4 cut(s) 8, 587, 727, 896
AcuI CTGAAG 5 cut(s) 81, 90, 287, 588, 833
AdeI CACNNNGTG 2 cut(s) 390, 976
AfaI GTAC 1 cut(s) 1001
AgsI TTSAA 9 cut(s) 268, 326, 446, 592, 634, 739, 811, 914, 1043
AjnI CCWGG 2 cut(s) 386, 995
AloI GAACNNNNNNTCC 4 cut(s) 231, 263, 659, 691
AluBI AGCT 3 cut(s) 59, 199, 706
AluI AGCT 3 cut(s) 59, 199, 706
Alw21I GWGCWC 2 cut(s) 779, 873
Alw26I GTCTC 3 cut(s) 713, 773, 882
AlwI GGATC 1 cut(s) 328
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 3 cut(s) 56, 706, 959
ApoI RAATTY 4 cut(s) 8, 587, 727, 896
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 2 cut(s) 153, 918
AspLEI GCGC 2 cut(s) 602, 711
AspS9I GGNCC 2 cut(s) 641, 825
AsuHPI GGTGA 2 cut(s) 376, 700
AvaII GGWCC 2 cut(s) 641, 825
AxyI CCTNAGG 1 cut(s) 829
BauI CACGAG 1 cut(s) 1103
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 2 cut(s) 779, 873
BbvI GCAGC 3 cut(s) 68, 693, 946
BccI CCATC 2 cut(s) 215, 677
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 388, 997
BcoDI GTCTC 3 cut(s) 713, 773, 882
BfaI CTAG 2 cut(s) 546, 923
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 57, 707, 960
BlsI GCNGC 3 cut(s) 58, 708, 961
Bme1390I CCNGG 2 cut(s) 388, 997
Bme18I GGWCC 2 cut(s) 641, 825
BmgT120I GGNCC 2 cut(s) 641, 825
BmrFI CCNGG 2 cut(s) 388, 997
BmsI GCATC 2 cut(s) 55, 118
BpiI GAAGAC 1 cut(s) 793
Bsa29I ATCGAT 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 1085
BsaWI WCCGGW 2 cut(s) 249, 771
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 829
Bse3DI GCAATG 2 cut(s) 767, 1136
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 388, 997
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 1085
BseGI GGATG 4 cut(s) 133, 226, 436, 688
BseMI GCAATG 2 cut(s) 767, 1136
BseMII CTCAG 1 cut(s) 843
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 522, 1071
BseXI GCAGC 3 cut(s) 68, 693, 946
BseYI CCCAGC 2 cut(s) 651, 702
BshFI GGCC 1 cut(s) 300
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 779, 873
BsiSI CCGG 2 cut(s) 250, 772
BsmAI GTCTC 3 cut(s) 713, 773, 882
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 779, 873
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 5 cut(s) 177, 256, 310, 333, 925
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 842
BspDI ATCGAT 1 cut(s) 450
BspEI TCCGGA 1 cut(s) 771
BspHI TCATGA 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 767, 1136
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 1085
BssMI GATC 5 cut(s) 177, 256, 310, 333, 925
BssSI CACGAG 1 cut(s) 1103
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 388, 997
Bst4CI ACNGT 2 cut(s) 405, 1004
Bst6I CTCTTC 2 cut(s) 111, 806
BstC8I GCNNGC 5 cut(s) 201, 298, 542, 571, 779
BstDEI CTNAG 1 cut(s) 829
BstDSI CCRYGG 1 cut(s) 1085
BstF5I GGATG 4 cut(s) 133, 226, 436, 688
BstHHI GCGC 2 cut(s) 602, 711
BstKTI GATC 5 cut(s) 180, 259, 313, 336, 928
BstMAI GTCTC 3 cut(s) 713, 773, 882
BstMBI GATC 5 cut(s) 177, 256, 310, 333, 925
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 2 cut(s) 388, 997
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 386, 995
BstV1I GCAGC 3 cut(s) 68, 693, 946
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 450
Bsu36I CCTNAGG 1 cut(s) 829
BsuRI GGCC 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 1085
BtsCI GGATG 4 cut(s) 133, 226, 436, 688
BtsIMutI CAGTG 2 cut(s) 168, 1168
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 5 cut(s) 201, 298, 542, 571, 779
CciI TCATGA 1 cut(s) 715
CfoI GCGC 2 cut(s) 602, 711
Cfr13I GGNCC 2 cut(s) 641, 825
ClaI ATCGAT 1 cut(s) 450
CsiI ACCWGGT 1 cut(s) 386
Csp6I GTAC 1 cut(s) 1000
CviAII CATG 5 cut(s) 25, 124, 308, 537, 716
CviJI RGCY 7 cut(s) 59, 199, 300, 376, 417, 499, 706
CviKI_1 RGCY 7 cut(s) 59, 199, 300, 376, 417, 499, 706
CviQI GTAC 1 cut(s) 1000
DdeI CTNAG 1 cut(s) 829
DpnI GATC 5 cut(s) 179, 258, 312, 335, 927
DpnII GATC 5 cut(s) 177, 256, 310, 333, 925
DraI TTTAAA 1 cut(s) 13
DraIII CACNNNGTG 2 cut(s) 390, 976
Eam1104I CTCTTC 2 cut(s) 111, 806
EarI CTCTTC 2 cut(s) 111, 806
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 641, 825
Eco57I CTGAAG 5 cut(s) 81, 90, 287, 588, 833
Eco81I CCTNAGG 1 cut(s) 829
EcoO109I RGGNCCY 1 cut(s) 825
EcoRI GAATTC 2 cut(s) 587, 727
EcoRII CCWGG 2 cut(s) 386, 995
FaeI CATG 5 cut(s) 28, 127, 311, 540, 719
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 932, 964
FatI CATG 5 cut(s) 24, 123, 307, 536, 715
Fnu4HI GCNGC 3 cut(s) 57, 707, 960
FokI GGATG 4 cut(s) 140, 233, 423, 695
Fsp4HI GCNGC 3 cut(s) 57, 707, 960
FspBI CTAG 2 cut(s) 546, 923
FspI TGCGCA 1 cut(s) 710
GlaI GCGC 2 cut(s) 601, 710
GluI GCNGC 3 cut(s) 57, 707, 960
GsaI CCCAGC 2 cut(s) 655, 706
HaeIII GGCC 1 cut(s) 300
HapII CCGG 2 cut(s) 250, 772
HhaI GCGC 2 cut(s) 602, 711
Hin1II CATG 5 cut(s) 28, 127, 311, 540, 719
Hin6I GCGC 2 cut(s) 600, 709
HinP1I GCGC 2 cut(s) 600, 709
HinfI GANTC 6 cut(s) 452, 617, 742, 814, 904, 1056
HpaII CCGG 2 cut(s) 250, 772
HphI GGTGA 2 cut(s) 376, 700
Hpy166II GTNNAC 2 cut(s) 395, 979
Hpy188I TCNGA 4 cut(s) 457, 607, 747, 882
Hpy8I GTNNAC 2 cut(s) 395, 979
HpyAV CCTTC 5 cut(s) 44, 311, 934, 1130, 1136
HpyCH4III ACNGT 2 cut(s) 405, 1004
HpyCH4IV ACGT 2 cut(s) 559, 798
HpyCH4V TGCA 7 cut(s) 77, 123, 203, 296, 317, 1036, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 1 cut(s) 829
HpySE526I ACGT 2 cut(s) 559, 798
Hsp92II CATG 5 cut(s) 28, 127, 311, 540, 719
HspAI GCGC 2 cut(s) 600, 709
Kpn2I TCCGGA 1 cut(s) 771
Kzo9I GATC 5 cut(s) 177, 256, 310, 333, 925
LmnI GCTCC 2 cut(s) 774, 972
Lsp1109I GCAGC 3 cut(s) 68, 693, 946
LweI GCATC 2 cut(s) 55, 118
MabI ACCWGGT 1 cut(s) 386
MaeI CTAG 2 cut(s) 546, 923
MaeII ACGT 2 cut(s) 559, 798
MaeIII GTNAC 4 cut(s) 487, 560, 787, 1064
MalI GATC 5 cut(s) 179, 258, 312, 335, 927
MboI GATC 5 cut(s) 177, 256, 310, 333, 925
MboII GAAGA 9 cut(s) 17, 29, 74, 92, 128, 203, 751, 793, 823
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 779, 873
MlyI GAGTC 3 cut(s) 626, 823, 913
MmeI TCCRAC 2 cut(s) 619, 645
MroI TCCGGA 1 cut(s) 771
MroXI GAANNNNTTC 2 cut(s) 153, 918
MseI TTAA 2 cut(s) 12, 426
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 2 cut(s) 59, 706
MspI CCGG 2 cut(s) 250, 772
MspR9I CCNGG 2 cut(s) 388, 997
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 388, 997
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NdeII GATC 5 cut(s) 177, 256, 310, 333, 925
NlaIII CATG 5 cut(s) 28, 127, 311, 540, 719
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 560, 1064
NsbI TGCGCA 1 cut(s) 710
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 715
PceI AGGCCT 1 cut(s) 300
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 2 cut(s) 153, 918
PfeI GAWTC 3 cut(s) 452, 742, 1056
PkrI GCNGC 3 cut(s) 58, 708, 961
PleI GAGTC 3 cut(s) 625, 822, 912
PpsI GAGTC 3 cut(s) 625, 822, 912
PpuMI RGGWCCY 1 cut(s) 825
PsiI TTATAA 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 386, 995
PspFI CCCAGC 2 cut(s) 651, 702
PspGI CCWGG 2 cut(s) 386, 995
PspPI GGNCC 2 cut(s) 641, 825
PspPPI RGGWCCY 1 cut(s) 825
PsuI RGATCY 1 cut(s) 333
PvuII CAGCTG 2 cut(s) 59, 706
RsaI GTAC 1 cut(s) 1001
RsaNI GTAC 1 cut(s) 1000
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 2 cut(s) 12, 426
SatI GCNGC 3 cut(s) 57, 707, 960
Sau3AI GATC 5 cut(s) 177, 256, 310, 333, 925
Sau96I GGNCC 2 cut(s) 641, 825
SchI GAGTC 3 cut(s) 626, 823, 913
ScrFI CCNGG 2 cut(s) 388, 997
SduI GDGCHC 2 cut(s) 779, 873
SetI ASST 8 cut(s) 61, 100, 201, 392, 562, 708, 801, 830
SexAI ACCWGGT 1 cut(s) 386
SfaNI GCATC 2 cut(s) 55, 118
SinI GGWCC 2 cut(s) 641, 825
SmiI ATTTAAAT 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 558
SseBI AGGCCT 1 cut(s) 300
SspI AATATT 3 cut(s) 659, 862, 986
SspMI CTAG 2 cut(s) 546, 923
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 386, 995
SwaI ATTTAAAT 1 cut(s) 13
TaaI ACNGT 2 cut(s) 405, 1004
TaiI ACGT 2 cut(s) 562, 801
TaqI TCGA 5 cut(s) 259, 351, 450, 678, 1018
TfiI GAWTC 3 cut(s) 452, 742, 1056
Tru1I TTAA 2 cut(s) 12, 426
Tru9I TTAA 2 cut(s) 12, 426
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 560, 1064
TseI GCWGC 3 cut(s) 56, 706, 959
Tsp45I GTSAC 2 cut(s) 560, 1064
TspDTI ATGAA 8 cut(s) 29, 162, 220, 290, 425, 704, 953, 1125
TspGWI ACGGA 1 cut(s) 1074
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 641, 825
XapI RAATTY 4 cut(s) 8, 587, 727, 896
XbaI TCTAGA 1 cut(s) 922
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 2 cut(s) 153, 918
XspI CTAG 2 cut(s) 546, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.