Rmu_sc0003755.1_g000001

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003755.1
OG0000731
Physical Location & Seq
Reverse (-)
1 .. 1188
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003755.1_g000001.1.cds

Sequence Viewer

Length: 460 bp
atggaattgatccctgcggagcagcgccttagggcagtccaaaagaataaagtatggggattcaattattgtgcctccgaacttttggaatctggagtcgagtttggcattggctccagccaggaccagttgctggacataactttccgtgagggagtaatcagaattccaccactgtttatccacgagacgacgagttcgttgttgaggaacctgattgcttatgagcaatgcagtcttagtagcacgcatgacgttacatcatatgcctgcctcatgaagagtctcatcgattcctcgcgggatagcaatctgcttcaggagaaggggataacaaaatatcaccactggattggaggtgaagatgaatatttgactcaaatattcagaagcatactagatgaagttgttgtcaaggaattccattttagaaccttgtgcgatgaagtgaatgaatact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

153

Amino Acids

17.61

Weight (kDa)

4.96

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AccII CGCG 1 cut(s) 301
AciI CCGC 2 cut(s) 17, 301
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 2 cut(s) 165, 419
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 182, 290
AlwI GGATC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 165, 419
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 335, 371
AvaII GGWCC 1 cut(s) 124
AxyI CCTNAGG 1 cut(s) 29
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 182, 290
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 28
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 115, 212
BmrFI CCNGG 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 100, 114
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 127, 353
Bse21I CCTNAGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 127, 353
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 182, 290
BsmBI CGTCTC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 2 cut(s) 17, 301
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 115, 212
BspPI GGATC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 236
BsrI ACTGG 2 cut(s) 127, 353
BssMI GATC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 248, 271
BstDEI CTNAG 2 cut(s) 29, 239
BstFNI CGCG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 182, 290
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 173, 346
Cac8I GCNNGC 2 cut(s) 248, 271
CaiI CAGNNNCTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 291
CviAII CATG 2 cut(s) 251, 277
CviJI RGCY 2 cut(s) 114, 120
CviKI_1 RGCY 2 cut(s) 114, 120
DdeI CTNAG 2 cut(s) 29, 239
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 29
EcoRI GAATTC 2 cut(s) 165, 419
EcoRII CCWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 2 cut(s) 254, 280
FaiI YATR 8 cut(s) 55, 140, 225, 252, 265, 267, 278, 395
FatI CATG 2 cut(s) 250, 276
FauI CCCGC 1 cut(s) 294
FauNDI CATATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 100, 114
HaeII RGCGCY 1 cut(s) 28
HhaI GCGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 254, 280
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 6 cut(s) 60, 89, 96, 283, 293, 376
HphI GGTGA 2 cut(s) 335, 371
Hpy188I TCNGA 3 cut(s) 79, 164, 389
Hpy188III TCNNGA 3 cut(s) 93, 277, 320
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 29, 239
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 254, 280
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 19, 119
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 292, 374
MluCI AATT 4 cut(s) 5, 64, 165, 419
MlyI GAGTC 3 cut(s) 105, 292, 370
MnlI CCTC 6 cut(s) 85, 145, 201, 284, 307, 350
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 301
NdeI CATATG 1 cut(s) 265
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 254, 280
NlaIV GGNNCC 2 cut(s) 115, 212
PagI TCATGA 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PfeI GAWTC 3 cut(s) 60, 89, 293
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 3 cut(s) 104, 291, 370
PpsI GAGTC 3 cut(s) 104, 291, 370
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 115, 212
PspPI GGNCC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 133
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 3 cut(s) 105, 292, 370
ScrFI CCNGG 1 cut(s) 122
SetI ASST 4 cut(s) 216, 258, 361, 437
SinI GGWCC 1 cut(s) 124
Sse9I AATT 4 cut(s) 5, 64, 165, 419
SsiI CCGC 2 cut(s) 17, 301
SspI AATATT 2 cut(s) 371, 384
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 99, 291
TasI AATT 4 cut(s) 5, 64, 165, 419
TfiI GAWTC 3 cut(s) 60, 89, 293
TscAI CASTG 2 cut(s) 180, 353
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 293, 381, 417, 459
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 2 cut(s) 180, 353
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 2 cut(s) 165, 419
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.