Rmu_sc0005609.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005609.1
OG0021672
Physical Location & Seq
Forward (+)
17139 .. 19041
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005609.1_g000008.1.cds

Sequence Viewer

Length: 489 bp
atgaaggcggcagcagcgtcagcaaccttgaaccatcccattcgtctctacccatcacccatttccggccaaattgacttcccggctcggcggtctcaacctctcgcacacaactccggcaaagggttgaaattgtaccgaaatgagtctgtgtgctccacttctagtgtaatttgtgctgtcaatggaggtcagggagggtatgtctctgcgtgggacgagaaaccatatgagtttcttccgaatgggaaaagggcttacttagatgaacaagacgtggtcacattccttgatcctcctaaagagttgattcctttggactcggcttcttataatcctgctgcatatctttggaaaaaaattgatgatattccccaggaaaggcgccgtcggctgctgcgcttgctagagcctaggatcgttgatgtctggaaaatggttatgcaggctgatctcaagagcttgggagatagctggcacacgatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.21

Weight (kDa)

8.87

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021672)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8311737.1_g000001 Rmu_sc0005609.1_g000008
rosa_rugosa Rorug03G0176700 Rorug03G0176700 Rorug03G0176800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 384
AciI CCGC 2 cut(s) 8, 91
AclWI GGATC 2 cut(s) 287, 425
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 385
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 65, 123, 381
AgsI TTSAA 2 cut(s) 31, 130
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 462, 474
AluI AGCT 2 cut(s) 462, 474
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 3 cut(s) 50, 99, 211
AlwI GGATC 2 cut(s) 287, 425
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 5 cut(s) 11, 14, 341, 394, 397
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 2 cut(s) 387, 402
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 48
AvrII CCTAGG 1 cut(s) 413
BanI GGYRCC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 5 cut(s) 23, 26, 328, 381, 384
BccI CCATC 2 cut(s) 42, 61
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 377
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 50, 99, 211
BfaI CTAG 3 cut(s) 165, 407, 414
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 6 cut(s) 9, 12, 15, 342, 395, 398
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 6 cut(s) 10, 13, 16, 343, 396, 399
Bme1390I CCNGG 2 cut(s) 83, 377
BmgBI CACGTC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 83, 377
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 375, 413
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 123, 381
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 375, 413
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 65, 123, 381
BseXI GCAGC 5 cut(s) 23, 26, 328, 381, 384
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 3 cut(s) 66, 83, 117
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 65, 123, 381
BsmAI GTCTC 3 cut(s) 50, 99, 211
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 292, 417, 451
BspACI CCGC 2 cut(s) 8, 91
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 2 cut(s) 287, 425
BspT107I GGYRCC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 375, 413
BssMI GATC 3 cut(s) 292, 417, 451
BssNI GRCGYC 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 404, 447, 476
BstDEI CTNAG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 2 cut(s) 387, 402
BstKTI GATC 3 cut(s) 295, 420, 454
BstMAI GTCTC 3 cut(s) 50, 99, 211
BstMBI GATC 3 cut(s) 292, 417, 451
BstMWI GCNNNNNNNGC 4 cut(s) 14, 20, 391, 403
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 81, 375
BstV1I GCAGC 5 cut(s) 23, 26, 328, 381, 384
BsuRI GGCC 1 cut(s) 69
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 3 cut(s) 404, 447, 476
CfoI GCGC 2 cut(s) 387, 402
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 9 cut(s) 69, 86, 257, 326, 394, 412, 449, 462, 474
CviKI_1 RGCY 9 cut(s) 69, 86, 257, 326, 394, 412, 449, 462, 474
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 262
DinI GGCGCC 1 cut(s) 386
DpnI GATC 3 cut(s) 294, 419, 453
DpnII GATC 3 cut(s) 292, 417, 451
EaeI YGGCCR 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 413
EgeI GGCGCC 1 cut(s) 386
EheI GGCGCC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 50
FaiI YATR 7 cut(s) 204, 229, 231, 333, 346, 443, 487
FaqI GGGAC 1 cut(s) 230
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 6 cut(s) 9, 12, 15, 342, 395, 398
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 9, 12, 15, 342, 395, 398
FspBI CTAG 3 cut(s) 165, 407, 414
GlaI GCGC 2 cut(s) 386, 401
GluI GCNGC 6 cut(s) 9, 12, 15, 342, 395, 398
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 1 cut(s) 69
HapII CCGG 3 cut(s) 66, 83, 117
HgaI GACGC 1 cut(s) 6
HhaI GCGC 2 cut(s) 387, 402
Hin1I GRCGYC 1 cut(s) 385
Hin6I GCGC 2 cut(s) 385, 400
HinP1I GCGC 2 cut(s) 385, 400
HinfI GANTC 3 cut(s) 146, 310, 320
HpaII CCGG 3 cut(s) 66, 83, 117
HphI GGTGA 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 430, 457
Hpy99I CGWCG 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 344, 445
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 20, 391, 403
HpyF3I CTNAG 1 cut(s) 262
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 385
HspAI GCGC 2 cut(s) 385, 400
KasI GGCGCC 1 cut(s) 384
Kzo9I GATC 3 cut(s) 292, 417, 451
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 5 cut(s) 23, 26, 328, 381, 384
MaeI CTAG 3 cut(s) 165, 407, 414
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 294, 419, 453
MboI GATC 3 cut(s) 292, 417, 451
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 4 cut(s) 72, 131, 171, 360
Mly113I GGCGCC 1 cut(s) 385
MlyI GAGTC 2 cut(s) 155, 314
MnlI CCTC 4 cut(s) 111, 182, 191, 306
MspI CCGG 3 cut(s) 66, 83, 117
MspR9I CCNGG 2 cut(s) 83, 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 4 cut(s) 14, 20, 391, 403
NarI GGCGCC 1 cut(s) 385
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 292, 417, 451
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 2 cut(s) 67, 302
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 6 cut(s) 10, 13, 16, 343, 396, 399
PleI GAGTC 2 cut(s) 154, 314
PluTI GGCGCC 1 cut(s) 388
PpsI GAGTC 2 cut(s) 154, 314
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 6 cut(s) 9, 12, 15, 342, 395, 398
Sau3AI GATC 3 cut(s) 292, 417, 451
SchI GAGTC 2 cut(s) 155, 314
ScrFI CCNGG 2 cut(s) 83, 377
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 29, 103, 193, 279, 464, 476
SfoI GGCGCC 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 4 cut(s) 72, 131, 171, 360
SsiI CCGC 2 cut(s) 8, 91
SspDI GGCGCC 1 cut(s) 384
SspMI CTAG 3 cut(s) 165, 407, 414
StyD4I CCNGG 2 cut(s) 81, 375
StyI CCWWGG 1 cut(s) 413
TaiI ACGT 1 cut(s) 279
TasI AATT 4 cut(s) 72, 131, 171, 360
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 310
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 5 cut(s) 11, 14, 341, 394, 397
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 17, 282
Tth111I GACNNNGTC 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 3 cut(s) 165, 407, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.